Wall clock time and date at job start Tue Mar 31 2020 20:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86796 * 119.99899 * 2 1 4 4 H 1.48503 * 109.46666 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99428 * 3 2 1 6 6 H 1.48503 * 109.47307 * 60.00196 * 3 2 1 7 7 C 1.38947 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99901 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00536 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99911 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46941 * 179.97438 * 12 10 9 14 14 C 1.48529 * 111.00207 * 307.39820 * 13 12 10 15 15 C 1.54937 * 103.22673 * 200.28440 * 14 13 12 16 16 C 1.54591 * 102.92507 * 37.41069 * 15 14 13 17 17 O 1.42904 * 110.39291 * 97.00183 * 16 15 14 18 18 C 1.52997 * 110.31161 * 219.13054 * 16 15 14 19 19 N 1.46503 * 109.46952 * 300.71657 * 18 16 15 20 20 C 1.34777 * 119.99919 * 179.97438 * 19 18 16 21 21 O 1.21489 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.48330 * 119.99950 * 179.97438 * 20 19 18 23 23 C 1.42273 * 126.94125 * 179.97438 * 22 20 19 24 24 C 1.35314 * 103.92399 * 179.97438 * 23 22 20 25 25 O 1.34014 * 106.66717 * 0.26711 * 24 23 22 26 26 N 1.20908 * 111.84671 * 359.51978 * 25 24 23 27 27 C 1.47900 * 110.99503 * 189.99980 * 13 12 10 28 28 H 0.97004 * 119.99533 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99724 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47020 * 60.00026 * 12 10 9 31 31 H 1.08996 * 109.46828 * 300.00272 * 12 10 9 32 32 H 1.09008 * 110.66765 * 318.71239 * 14 13 12 33 33 H 1.08998 * 110.66941 * 81.67454 * 14 13 12 34 34 H 1.08998 * 110.71998 * 279.05391 * 15 14 13 35 35 H 1.09006 * 110.72519 * 155.77192 * 15 14 13 36 36 H 0.96698 * 113.99663 * 62.84661 * 17 16 15 37 37 H 1.08993 * 109.47151 * 180.71549 * 18 16 15 38 38 H 1.08997 * 109.47015 * 60.71327 * 18 16 15 39 39 H 0.96997 * 119.99884 * 359.97438 * 19 18 16 40 40 H 1.08003 * 128.03666 * 359.97438 * 23 22 20 41 41 H 1.08002 * 126.66225 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.91933 * 26.49769 * 27 13 12 43 43 H 1.08998 * 109.92224 * 265.19307 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 3.1835 -5.8369 -1.1020 15 6 3.7272 -7.2767 -1.2801 16 6 2.4728 -8.1508 -1.0510 17 8 1.8815 -8.5105 -2.3013 18 6 2.8381 -9.4063 -0.2566 19 7 3.8453 -10.1742 -0.9929 20 6 4.3209 -11.3267 -0.4811 21 8 3.9141 -11.7291 0.5906 22 6 5.3403 -12.1045 -1.2269 23 6 5.9405 -13.3312 -0.8279 24 6 6.7901 -13.6224 -1.8400 25 8 6.6776 -12.6301 -2.7337 26 7 5.8693 -11.8009 -2.3860 27 6 1.5089 -7.2660 -0.2389 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6167 -4.9209 -0.8886 31 1 0.6173 -4.9205 0.8913 32 1 2.6937 -5.4951 -2.0139 33 1 3.9832 -5.1533 -0.8171 34 1 4.4911 -7.4955 -0.5341 35 1 4.1181 -7.4196 -2.2875 36 1 2.4518 -9.0508 -2.8651 37 1 1.9474 -10.0180 -0.1141 38 1 3.2399 -9.1175 0.7146 39 1 4.1699 -9.8531 -1.8487 40 1 5.7599 -13.8982 0.0734 41 1 7.4369 -14.4843 -1.9112 42 1 0.5934 -7.0969 -0.8057 43 1 1.2769 -7.7455 0.7121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671976745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:55 Heat of formation + Delta-G solvation = -67.385087 kcal Electronic energy + Delta-G solvation = -28654.943418 eV Core-core repulsion = 24316.997163 eV Total energy + Delta-G solvation = -4337.946255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.12133 -41.48491 -40.61363 -39.68042 -37.19435 -35.89266 -35.61305 -34.99507 -33.38258 -32.89701 -32.35953 -30.49919 -28.80418 -27.16701 -25.87829 -24.76761 -23.98676 -22.87527 -21.64289 -21.40349 -21.10719 -19.91865 -19.75047 -18.79453 -18.29291 -17.96818 -17.56049 -17.20449 -16.78918 -16.58653 -16.38985 -16.26856 -15.91166 -15.68046 -15.38618 -14.89197 -14.78842 -14.68425 -14.44421 -14.23705 -13.81508 -13.78902 -13.48144 -13.18574 -13.03819 -12.78560 -12.76407 -12.45068 -12.40431 -12.37534 -12.11811 -11.99644 -11.58108 -11.55922 -11.51879 -11.09572 -10.72741 -10.42193 -10.20194 -10.02883 -9.43528 -8.48643 -5.97437 0.03511 0.77642 1.35118 1.40678 1.54863 1.66561 1.96594 2.00701 2.26241 2.29684 2.65330 2.82834 3.12576 3.18374 3.24442 3.34097 3.53586 3.62464 3.71309 4.01162 4.17135 4.21676 4.25280 4.28410 4.41366 4.48237 4.56299 4.57391 4.65812 4.67081 4.73161 4.88435 4.97943 4.98679 5.05843 5.18611 5.39767 5.76579 5.85535 6.04391 6.09168 6.57693 6.59209 6.78076 7.03427 7.10469 7.52481 8.07891 8.68977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.001886 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.397745 B =14841.486523 C =15275.695031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.046 3.954 13 N -0.506 5.506 14 C 0.041 3.959 15 C -0.142 4.142 16 C 0.127 3.873 17 O -0.557 6.557 18 C 0.110 3.890 19 N -0.703 5.703 20 C 0.598 3.402 21 O -0.554 6.554 22 C -0.056 4.056 23 C -0.206 4.206 24 C -0.023 4.023 25 O 0.126 5.874 26 N -0.349 5.349 27 C 0.046 3.954 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.388 0.612 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.191 0.809 41 H 0.277 0.723 42 H 0.065 0.935 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -28.904 -5.970 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.227 3.773 11 O -0.500 6.500 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.086 4.086 15 C -0.180 4.180 16 C 0.085 3.915 17 O -0.365 6.365 18 C -0.014 4.014 19 N -0.356 5.356 20 C 0.383 3.617 21 O -0.430 6.430 22 C -0.214 4.214 23 C -0.229 4.229 24 C -0.104 4.104 25 O 0.049 5.951 26 N -0.049 5.049 27 C -0.082 4.082 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.238 0.762 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.250 0.750 40 H 0.208 0.792 41 H 0.293 0.707 42 H 0.084 0.916 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.577 -27.580 -5.260 29.358 hybrid contribution -0.223 0.500 -0.532 0.763 sum 8.354 -27.080 -5.791 28.925 Atomic orbital electron populations 1.69688 1.06856 1.29260 1.50288 1.26066 0.96564 1.02480 0.96261 0.84852 0.78020 0.77026 0.78313 1.19753 1.19605 1.19612 1.19704 0.92718 0.83877 1.49839 0.90172 1.41921 1.09331 1.04692 1.64915 1.20637 0.88285 0.85919 0.82462 1.90431 1.15462 1.87556 1.56524 1.22024 0.94298 0.88629 1.03554 1.64702 1.13428 1.00765 1.44218 1.23242 0.96589 0.97486 0.91299 1.23242 0.97354 0.93946 1.03489 1.22044 0.92747 0.92204 0.84518 1.86615 1.46293 1.74393 1.29164 1.22063 0.91846 0.91707 0.95743 1.45695 1.42480 1.22547 1.24863 1.17111 0.80054 0.80434 0.84082 1.90802 1.59959 1.69989 1.22295 1.23559 1.03414 0.99477 0.94951 1.23080 0.99661 0.96117 1.04040 1.26972 1.01022 0.95091 0.87269 1.84772 1.43175 1.25350 1.41845 1.74189 1.03951 1.13002 1.13720 1.22927 0.95941 0.89230 1.00135 0.91287 0.77022 0.91490 0.86879 0.95471 0.89906 0.89814 0.88535 0.76172 0.89695 0.89982 0.75042 0.79219 0.70711 0.91629 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 3 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -29.69 5.29 -306.98 -1.62 -31.31 16 10 C 0.44 21.17 7.49 87.66 0.66 21.83 16 11 O -0.61 -33.55 13.09 -3.06 -0.04 -33.59 16 12 C 0.05 1.67 5.52 85.56 0.47 2.14 16 13 N -0.51 -16.81 5.26 -887.55 -4.67 -21.47 16 14 C 0.04 1.41 5.31 86.65 0.46 1.87 16 15 C -0.14 -3.37 5.64 31.80 0.18 -3.19 16 16 C 0.13 2.67 1.05 -9.91 -0.01 2.66 16 17 O -0.56 -11.07 12.95 -148.98 -1.93 -13.00 16 18 C 0.11 2.15 4.50 86.38 0.39 2.54 16 19 N -0.70 -12.62 5.11 -465.52 -2.38 -15.00 16 20 C 0.60 13.03 7.85 86.93 0.68 13.72 16 21 O -0.55 -15.53 16.95 -3.68 -0.06 -15.59 16 22 C -0.06 -0.99 7.19 42.96 0.31 -0.68 16 23 C -0.21 -2.30 10.99 22.60 0.25 -2.05 16 24 C -0.02 -0.10 12.28 67.14 0.82 0.72 16 25 O 0.13 1.36 11.18 71.89 0.80 2.17 16 26 N -0.35 -5.60 11.84 -49.51 -0.59 -6.19 16 27 C 0.05 1.14 6.18 86.45 0.53 1.68 16 28 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.40 19.62 7.90 -92.71 -0.73 18.88 16 30 H 0.07 2.22 7.81 -2.39 -0.02 2.20 16 31 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 32 H 0.03 0.97 8.02 -2.38 -0.02 0.95 16 33 H 0.08 3.48 5.96 -2.39 -0.01 3.46 16 34 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 35 H 0.10 1.86 8.08 -2.38 -0.02 1.84 16 36 H 0.39 4.91 8.13 -74.06 -0.60 4.31 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 5.98 7.09 -92.71 -0.66 5.32 16 40 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.28 -2.01 8.06 -2.91 -0.02 -2.03 16 42 H 0.07 1.65 7.39 -2.39 -0.02 1.63 16 43 H 0.11 2.36 7.68 -2.39 -0.02 2.34 16 Total: -1.00 -77.33 366.70 -3.04 -80.38 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.89 Total: 35.31 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 6.03 Total: 22.79 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -8.97 Total: -123.70 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -1.23 Total: -60.02 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -77.33 -3.04 -80.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671976745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.992 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds