Wall clock time and date at job start Tue Mar 31 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99737 * 2 1 4 4 H 1.48500 * 109.47346 * 264.32169 * 3 2 1 5 5 H 1.48497 * 109.47296 * 24.32743 * 3 2 1 6 6 H 1.48503 * 109.47069 * 144.32628 * 3 2 1 7 7 C 1.38815 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99272 * 8.85305 * 7 2 1 9 9 N 1.36933 * 120.00319 * 188.85319 * 7 2 1 10 10 C 1.47156 * 120.98273 * 49.92711 * 9 7 2 11 11 C 1.53293 * 108.38445 * 129.48419 * 10 9 7 12 12 O 1.42955 * 109.22491 * 52.30385 * 11 10 9 13 13 C 1.42963 * 114.16550 * 297.41651 * 12 11 10 14 14 C 1.47146 * 120.98255 * 229.94554 * 9 7 2 15 15 H 1.08999 * 109.68047 * 110.75286 * 14 9 7 16 16 C 1.53001 * 109.68190 * 350.23951 * 14 9 7 17 17 N 1.46497 * 109.47170 * 60.32245 * 16 14 9 18 18 C 1.34779 * 119.99925 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99975 * 180.02562 * 18 17 16 21 21 O 1.42898 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.35956 * 116.99935 * 179.97438 * 21 20 18 23 23 C 1.38659 * 120.06272 * 359.73032 * 22 21 20 24 24 C 1.38180 * 119.96974 * 180.27490 * 23 22 21 25 25 C 1.38260 * 120.09551 * 359.97438 * 24 23 22 26 26 C 1.38257 * 120.12482 * 0.02562 * 25 24 23 27 27 C 1.38329 * 120.03120 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.04922 * 180.02562 * 27 26 25 29 29 H 0.96994 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.68020 * 249.21154 * 10 9 7 31 31 H 1.09002 * 109.67999 * 9.76195 * 10 9 7 32 32 H 1.09003 * 109.51142 * 172.22765 * 11 10 9 33 33 H 1.09005 * 109.50972 * 292.32511 * 11 10 9 34 34 H 1.08998 * 109.51689 * 302.66048 * 13 12 11 35 35 H 1.09000 * 109.51542 * 182.50272 * 13 12 11 36 36 H 1.08995 * 109.46964 * 300.32270 * 16 14 9 37 37 H 1.09003 * 109.47037 * 180.32400 * 16 14 9 38 38 H 0.97000 * 119.99883 * 0.02562 * 17 16 14 39 39 H 1.09007 * 109.46857 * 59.99849 * 20 18 17 40 40 H 1.09003 * 109.47174 * 300.00025 * 20 18 17 41 41 H 1.07999 * 120.01419 * 0.29217 * 23 22 21 42 42 H 1.08001 * 119.95564 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.93666 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.98391 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6176 1.9773 -1.3932 5 1 1.3928 2.6843 0.5767 6 1 3.4826 1.4778 0.8165 7 6 2.0104 -1.2021 0.0005 8 1 1.4800 -2.1319 -0.1430 9 7 3.3675 -1.2091 0.1830 10 6 3.9854 -0.4770 1.3001 11 6 4.9326 -1.4302 2.0377 12 8 5.8284 -2.0256 1.0962 13 6 5.1854 -2.8299 0.1045 14 6 4.2511 -1.9484 -0.7322 15 1 4.8393 -1.2456 -1.3223 16 6 3.4112 -2.8257 -1.6628 17 7 2.5077 -1.9804 -2.4471 18 6 1.6674 -2.5396 -3.3403 19 8 1.6596 -3.7424 -3.4950 20 6 0.7383 -1.6700 -4.1476 21 8 -0.0454 -2.4893 -5.0175 22 6 -0.9415 -1.8562 -5.8204 23 6 -1.0677 -0.4764 -5.7678 24 6 -1.9830 0.1645 -6.5806 25 6 -2.7733 -0.5680 -7.4469 26 6 -2.6507 -1.9440 -7.5026 27 6 -1.7360 -2.5910 -6.6912 28 9 -1.6156 -3.9355 -6.7456 29 1 -0.4850 0.8400 -0.0004 30 1 4.5472 0.3740 0.9152 31 1 3.2110 -0.1276 1.9830 32 1 5.5031 -0.8734 2.7812 33 1 4.3525 -2.2092 2.5325 34 1 4.6063 -3.6146 0.5914 35 1 5.9378 -3.2802 -0.5431 36 1 2.8272 -3.5293 -1.0696 37 1 4.0693 -3.3761 -2.3353 38 1 2.5147 -1.0183 -2.3242 39 1 1.3227 -0.9663 -4.7405 40 1 0.0799 -1.1196 -3.4754 41 1 -0.4506 0.0972 -5.0921 42 1 -2.0809 1.2393 -6.5398 43 1 -3.4876 -0.0644 -8.0814 44 1 -3.2694 -2.5141 -8.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673069878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:33 Heat of formation + Delta-G solvation = -93.062210 kcal Electronic energy + Delta-G solvation = -29785.305399 eV Core-core repulsion = 25426.325740 eV Total energy + Delta-G solvation = -4358.979660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.69894 -40.18379 -39.24225 -38.48195 -37.20881 -35.43807 -33.62581 -31.94418 -31.22228 -30.77850 -30.25466 -28.30561 -27.46896 -25.22718 -23.42441 -22.96117 -22.50601 -22.08920 -20.15682 -19.79473 -18.51890 -17.37858 -17.02308 -16.68252 -16.37488 -16.06676 -15.98657 -15.78535 -15.33706 -15.21120 -14.98087 -14.74057 -14.46027 -14.39956 -14.10960 -13.83443 -13.71585 -13.21039 -12.85607 -12.74328 -12.56624 -12.43452 -12.08821 -11.95439 -11.77071 -11.62485 -11.23883 -11.04346 -11.01665 -10.86710 -10.85406 -10.33425 -9.95550 -9.66626 -9.45310 -9.17268 -9.04414 -8.69740 -8.34902 -8.23149 -6.80787 -6.19339 -3.84542 1.02957 1.17898 2.74522 3.09825 3.14471 3.28206 3.30827 3.49248 3.93613 4.22928 4.29145 4.30283 4.62765 4.65860 4.73352 4.99329 5.05349 5.10471 5.16630 5.18339 5.39881 5.41320 5.43429 5.53305 5.63951 5.78815 5.87232 5.88287 5.89653 5.94690 6.00071 6.07467 6.10261 6.22444 6.26967 6.37132 6.54543 6.56395 6.70663 7.02392 7.26599 7.57470 7.85368 8.12030 8.23090 8.68815 8.75699 9.41502 9.89882 10.92314 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.003187 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.416682 B = 8784.328404 C =10060.755767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.044 3.956 3 Si 0.848 3.152 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.235 1.235 7 C -0.269 4.269 8 H 0.079 0.921 9 N -0.607 5.607 10 C 0.102 3.898 11 C 0.042 3.958 12 O -0.389 6.389 13 C 0.055 3.945 14 C 0.123 3.877 15 H 0.046 0.954 16 C 0.143 3.857 17 N -0.684 5.684 18 C 0.518 3.482 19 O -0.541 6.541 20 C 0.040 3.960 21 O -0.280 6.280 22 C 0.105 3.895 23 C -0.183 4.183 24 C -0.088 4.088 25 C -0.136 4.136 26 C -0.118 4.118 27 C 0.068 3.932 28 F -0.131 7.131 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 2.213 -9.779 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.158 4.158 3 Si 0.676 3.324 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.160 1.160 7 C -0.398 4.398 8 H 0.097 0.903 9 N -0.334 5.334 10 C -0.023 4.023 11 C -0.036 4.036 12 O -0.307 6.307 13 C -0.024 4.024 14 C 0.017 3.983 15 H 0.063 0.937 16 C 0.019 3.981 17 N -0.337 5.337 18 C 0.302 3.698 19 O -0.419 6.419 20 C -0.039 4.039 21 O -0.192 6.192 22 C 0.058 3.942 23 C -0.202 4.202 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.137 4.137 27 C 0.048 3.952 28 F -0.110 7.110 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.060 1.218 -9.842 9.973 hybrid contribution -0.085 1.571 0.280 1.598 sum 0.975 2.789 -9.562 10.008 Atomic orbital electron populations 1.69799 1.05917 1.26965 1.51075 1.25787 0.95098 0.98019 0.96914 0.87638 0.81541 0.83928 0.79306 1.21140 1.22491 1.16021 1.18699 0.80073 0.93408 1.47580 0.90350 1.44368 1.03231 1.59256 1.26544 1.22374 0.95675 0.93584 0.90646 1.23148 0.92702 0.96656 0.91090 1.87826 1.33806 1.66773 1.42322 1.22891 0.96067 0.92742 0.90684 1.21574 0.91854 0.93620 0.91231 0.93652 1.21093 0.91470 0.92990 0.92570 1.45662 1.38149 1.11922 1.37951 1.19683 0.81067 0.88377 0.80705 1.90693 1.68759 1.14652 1.67751 1.22605 0.94576 0.93520 0.93161 1.86209 1.48455 1.34561 1.50002 1.19136 0.91441 0.91530 0.92142 1.21293 1.03077 0.92322 1.03508 1.21023 0.94548 1.00366 0.94716 1.20895 1.01021 0.92869 1.00605 1.20991 0.98003 0.95466 0.99270 1.17007 1.00232 0.77476 1.00501 1.91516 1.95233 1.28676 1.95539 0.92447 0.93982 0.90799 0.89941 0.93324 0.92999 0.89437 0.91143 0.92062 0.75159 0.89455 0.87782 0.84163 0.85043 0.85004 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.97 55.49 0.78 -23.39 16 2 C 0.04 1.09 5.33 -17.43 -0.09 1.00 16 3 Si 0.85 18.41 26.73 -169.99 -4.54 13.86 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.24 -4.75 3.87 56.52 0.22 -4.53 16 7 C -0.27 -6.38 6.61 -15.06 -0.10 -6.48 16 8 H 0.08 2.15 7.12 -52.49 -0.37 1.78 16 9 N -0.61 -12.40 2.45 -164.30 -0.40 -12.80 16 10 C 0.10 1.94 4.26 -3.53 -0.02 1.93 16 11 C 0.04 0.70 6.98 37.31 0.26 0.96 16 12 O -0.39 -6.66 10.74 -35.23 -0.38 -7.04 16 13 C 0.05 0.87 6.29 37.31 0.23 1.10 16 14 C 0.12 2.16 3.21 -67.42 -0.22 1.95 16 15 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 16 C 0.14 2.53 4.51 -4.04 -0.02 2.52 16 17 N -0.68 -12.69 4.09 -60.30 -0.25 -12.94 16 18 C 0.52 10.12 7.91 -10.98 -0.09 10.04 16 19 O -0.54 -12.45 16.50 -14.35 -0.24 -12.68 16 20 C 0.04 0.66 5.22 36.01 0.19 0.85 16 21 O -0.28 -5.13 9.53 -39.51 -0.38 -5.51 16 22 C 0.10 1.63 6.69 -39.18 -0.26 1.36 16 23 C -0.18 -2.33 9.04 -39.45 -0.36 -2.69 16 24 C -0.09 -0.92 10.04 -39.59 -0.40 -1.31 16 25 C -0.14 -1.31 10.04 -39.57 -0.40 -1.70 16 26 C -0.12 -1.32 10.02 -39.54 -0.40 -1.72 16 27 C 0.07 1.00 7.31 -39.30 -0.29 0.71 16 28 F -0.13 -2.17 17.11 2.25 0.04 -2.14 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.04 0.82 6.13 -51.93 -0.32 0.50 16 31 H 0.07 1.48 6.85 -51.93 -0.36 1.12 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.40 7.60 -51.93 -0.39 1.01 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.41 7.67 7.25 -40.82 -0.30 7.37 16 39 H 0.09 1.14 7.67 -51.93 -0.40 0.74 16 40 H 0.10 1.74 7.65 -51.93 -0.40 1.34 16 41 H 0.14 1.63 6.30 -52.49 -0.33 1.30 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -30.85 360.58 -7.87 -38.72 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.99 Total: 9.98 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.94 Total: 8.51 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.13 Total: -49.13 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.99 Total: -25.23 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.54 Total: 13.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.85 -7.87 -38.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673069878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.343 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds