Wall clock time and date at job start Tue Mar 31 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99737 * 2 1 4 4 H 1.48500 * 109.47346 * 264.32169 * 3 2 1 5 5 H 1.48497 * 109.47296 * 24.32743 * 3 2 1 6 6 H 1.48503 * 109.47069 * 144.32628 * 3 2 1 7 7 C 1.38815 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99272 * 8.85305 * 7 2 1 9 9 N 1.36933 * 120.00319 * 188.85319 * 7 2 1 10 10 C 1.47156 * 120.98273 * 49.92711 * 9 7 2 11 11 C 1.53293 * 108.38445 * 129.48419 * 10 9 7 12 12 O 1.42955 * 109.22491 * 52.30385 * 11 10 9 13 13 C 1.42963 * 114.16550 * 297.41651 * 12 11 10 14 14 C 1.47146 * 120.98255 * 229.94554 * 9 7 2 15 15 H 1.08999 * 109.68047 * 110.75286 * 14 9 7 16 16 C 1.53001 * 109.68190 * 350.23951 * 14 9 7 17 17 N 1.46497 * 109.47170 * 60.32245 * 16 14 9 18 18 C 1.34779 * 119.99925 * 179.97438 * 17 16 14 19 19 O 1.21279 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99975 * 180.02562 * 18 17 16 21 21 O 1.42898 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.35956 * 116.99935 * 179.97438 * 21 20 18 23 23 C 1.38659 * 120.06272 * 359.73032 * 22 21 20 24 24 C 1.38180 * 119.96974 * 180.27490 * 23 22 21 25 25 C 1.38260 * 120.09551 * 359.97438 * 24 23 22 26 26 C 1.38257 * 120.12482 * 0.02562 * 25 24 23 27 27 C 1.38329 * 120.03120 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.04922 * 180.02562 * 27 26 25 29 29 H 0.96994 * 120.00054 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.68020 * 249.21154 * 10 9 7 31 31 H 1.09002 * 109.67999 * 9.76195 * 10 9 7 32 32 H 1.09003 * 109.51142 * 172.22765 * 11 10 9 33 33 H 1.09005 * 109.50972 * 292.32511 * 11 10 9 34 34 H 1.08998 * 109.51689 * 302.66048 * 13 12 11 35 35 H 1.09000 * 109.51542 * 182.50272 * 13 12 11 36 36 H 1.08995 * 109.46964 * 300.32270 * 16 14 9 37 37 H 1.09003 * 109.47037 * 180.32400 * 16 14 9 38 38 H 0.97000 * 119.99883 * 0.02562 * 17 16 14 39 39 H 1.09007 * 109.46857 * 59.99849 * 20 18 17 40 40 H 1.09003 * 109.47174 * 300.00025 * 20 18 17 41 41 H 1.07999 * 120.01419 * 0.29217 * 23 22 21 42 42 H 1.08001 * 119.95564 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.93666 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.98391 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6176 1.9773 -1.3932 5 1 1.3928 2.6843 0.5767 6 1 3.4826 1.4778 0.8165 7 6 2.0104 -1.2021 0.0005 8 1 1.4800 -2.1319 -0.1430 9 7 3.3675 -1.2091 0.1830 10 6 3.9854 -0.4770 1.3001 11 6 4.9326 -1.4302 2.0377 12 8 5.8284 -2.0256 1.0962 13 6 5.1854 -2.8299 0.1045 14 6 4.2511 -1.9484 -0.7322 15 1 4.8393 -1.2456 -1.3223 16 6 3.4112 -2.8257 -1.6628 17 7 2.5077 -1.9804 -2.4471 18 6 1.6674 -2.5396 -3.3403 19 8 1.6596 -3.7424 -3.4950 20 6 0.7383 -1.6700 -4.1476 21 8 -0.0454 -2.4893 -5.0175 22 6 -0.9415 -1.8562 -5.8204 23 6 -1.0677 -0.4764 -5.7678 24 6 -1.9830 0.1645 -6.5806 25 6 -2.7733 -0.5680 -7.4469 26 6 -2.6507 -1.9440 -7.5026 27 6 -1.7360 -2.5910 -6.6912 28 9 -1.6156 -3.9355 -6.7456 29 1 -0.4850 0.8400 -0.0004 30 1 4.5472 0.3740 0.9152 31 1 3.2110 -0.1276 1.9830 32 1 5.5031 -0.8734 2.7812 33 1 4.3525 -2.2092 2.5325 34 1 4.6063 -3.6146 0.5914 35 1 5.9378 -3.2802 -0.5431 36 1 2.8272 -3.5293 -1.0696 37 1 4.0693 -3.3761 -2.3353 38 1 2.5147 -1.0183 -2.3242 39 1 1.3227 -0.9663 -4.7405 40 1 0.0799 -1.1196 -3.4754 41 1 -0.4506 0.0972 -5.0921 42 1 -2.0809 1.2393 -6.5398 43 1 -3.4876 -0.0644 -8.0814 44 1 -3.2694 -2.5141 -8.1798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673069878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:32 Heat of formation + Delta-G solvation = -113.583113 kcal Electronic energy + Delta-G solvation = -29786.195253 eV Core-core repulsion = 25426.325740 eV Total energy + Delta-G solvation = -4359.869513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.86020 -41.43831 -40.62930 -39.88588 -38.33398 -36.97768 -35.27179 -33.70845 -32.72469 -31.70994 -31.32824 -29.62223 -29.02600 -26.62177 -25.09771 -24.08044 -23.59385 -23.33239 -21.72331 -21.31097 -19.65218 -18.91994 -18.23282 -18.02847 -17.71334 -17.48884 -17.38212 -17.14235 -16.73041 -16.48762 -16.37301 -15.95594 -15.81608 -15.58569 -15.41682 -15.27421 -15.14906 -14.64048 -14.48241 -14.07910 -13.87167 -13.71748 -13.48546 -13.35117 -13.05496 -12.74676 -12.70286 -12.43644 -12.27674 -12.20064 -12.17865 -12.07651 -11.37211 -11.34294 -11.04996 -10.75996 -10.41319 -9.97455 -9.95938 -9.28523 -8.50816 -8.11668 -5.76642 0.10076 0.22755 1.40552 1.44140 1.51815 1.56753 1.59874 2.47898 2.57482 2.61113 2.94596 3.10834 3.20425 3.22362 3.57587 3.77333 3.87348 3.96374 3.98547 4.06692 4.17331 4.24710 4.25735 4.31487 4.40626 4.45785 4.48638 4.58551 4.60698 4.72859 4.82669 4.95855 4.97852 5.05751 5.06877 5.23592 5.24810 5.39873 5.49242 5.65472 5.97318 6.15532 6.24535 6.30256 6.57175 6.92526 7.20387 7.54202 8.06601 9.03016 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.003187 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.416682 B = 8784.328404 C =10060.755767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.316 1.316 6 H -0.208 1.208 7 C -0.244 4.244 8 H 0.031 0.969 9 N -0.618 5.618 10 C 0.097 3.903 11 C 0.048 3.952 12 O -0.391 6.391 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.062 0.938 16 C 0.144 3.856 17 N -0.679 5.679 18 C 0.511 3.489 19 O -0.583 6.583 20 C 0.049 3.951 21 O -0.316 6.316 22 C 0.069 3.931 23 C -0.190 4.190 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.112 4.112 27 C 0.032 3.968 28 F -0.153 7.153 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.174 0.826 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 4.567 -10.861 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.244 1.244 6 H -0.131 1.131 7 C -0.374 4.374 8 H 0.048 0.952 9 N -0.346 5.346 10 C -0.027 4.027 11 C -0.030 4.030 12 O -0.309 6.309 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.080 0.920 16 C 0.020 3.980 17 N -0.330 5.330 18 C 0.297 3.703 19 O -0.464 6.464 20 C -0.029 4.029 21 O -0.229 6.229 22 C 0.023 3.977 23 C -0.209 4.209 24 C -0.100 4.100 25 C -0.138 4.138 26 C -0.131 4.131 27 C 0.012 3.988 28 F -0.132 7.132 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.139 0.861 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.192 0.808 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.444 3.575 -10.917 11.745 hybrid contribution -0.573 0.802 0.595 1.151 sum 1.871 4.377 -10.322 11.367 Atomic orbital electron populations 1.69948 1.07801 1.27448 1.53663 1.26276 0.95363 1.00973 0.97012 0.86778 0.81069 0.79313 0.79939 1.20261 1.24447 1.13121 1.18247 0.81557 0.91487 1.46100 0.95177 1.44453 1.02362 1.59759 1.27990 1.22426 0.95812 0.94352 0.90144 1.23127 0.92574 0.96129 0.91159 1.87839 1.33877 1.66765 1.42430 1.22966 0.96527 0.91965 0.90630 1.21702 0.91484 0.93752 0.91026 0.92049 1.21129 0.91321 0.92742 0.92799 1.45667 1.37978 1.11924 1.37462 1.20254 0.81136 0.88213 0.80722 1.90657 1.70073 1.16493 1.69161 1.22524 0.94188 0.92940 0.93249 1.86137 1.49722 1.36092 1.50958 1.19506 0.92216 0.92942 0.93035 1.21504 1.03991 0.91170 1.04238 1.21493 0.93063 1.02101 0.93375 1.21423 1.00516 0.92073 0.99817 1.21383 0.96790 0.96511 0.98370 1.17578 1.02079 0.76877 1.02272 1.91447 1.95574 1.30305 1.95840 0.92846 0.93164 0.92087 0.86774 0.93941 0.93758 0.86057 0.94145 0.89761 0.75085 0.85879 0.88458 0.83559 0.81707 0.80837 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.71 13.97 21.65 0.30 -52.41 16 2 C 0.00 0.10 5.33 84.86 0.45 0.55 16 3 Si 0.90 37.48 26.73 68.60 1.83 39.31 16 4 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.32 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.21 -7.64 3.87 99.48 0.38 -7.25 16 7 C -0.24 -11.85 6.61 84.03 0.56 -11.30 16 8 H 0.03 1.77 7.12 -2.91 -0.02 1.75 16 9 N -0.62 -24.74 2.45 -673.73 -1.65 -26.39 16 10 C 0.10 3.48 4.26 86.35 0.37 3.85 16 11 C 0.05 1.45 6.98 72.08 0.50 1.96 16 12 O -0.39 -12.11 10.74 -148.98 -1.60 -13.71 16 13 C 0.06 1.68 6.29 72.08 0.45 2.13 16 14 C 0.13 4.21 3.21 44.97 0.14 4.36 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 C 0.14 5.15 4.51 86.38 0.39 5.54 16 17 N -0.68 -25.75 4.09 -463.06 -1.90 -27.64 16 18 C 0.51 20.91 7.91 87.66 0.69 21.60 16 19 O -0.58 -28.34 16.50 16.01 0.26 -28.07 16 20 C 0.05 1.69 5.22 71.24 0.37 2.06 16 21 O -0.32 -12.27 9.53 -74.02 -0.71 -12.97 16 22 C 0.07 2.21 6.69 22.53 0.15 2.36 16 23 C -0.19 -4.71 9.04 22.36 0.20 -4.51 16 24 C -0.08 -1.46 10.04 22.26 0.22 -1.24 16 25 C -0.12 -1.89 10.04 22.28 0.22 -1.66 16 26 C -0.11 -2.30 10.02 22.30 0.22 -2.08 16 27 C 0.03 0.96 7.31 22.45 0.16 1.12 16 28 F -0.15 -5.39 17.11 44.97 0.77 -4.62 16 29 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.05 1.76 6.13 -2.39 -0.01 1.74 16 31 H 0.06 2.34 6.85 -2.39 -0.02 2.33 16 32 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.41 15.42 7.25 -92.71 -0.67 14.75 16 39 H 0.12 3.22 7.67 -2.38 -0.02 3.20 16 40 H 0.10 3.44 7.65 -2.39 -0.02 3.42 16 41 H 0.15 3.30 6.30 -2.91 -0.02 3.29 16 42 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -71.64 360.58 2.48 -69.16 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.04 Total: 32.60 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 5.12 Total: 24.74 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.24 Total: -106.44 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -2.04 Total: -54.76 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.62 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 1.83 Total: 39.31 kcal Total: -71.64 2.48 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673069878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.423 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds