Wall clock time and date at job start Tue Mar 31 2020 20:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00396 * 2 1 4 4 H 1.48507 * 109.46981 * 95.60769 * 3 2 1 5 5 H 1.48492 * 109.47381 * 215.60954 * 3 2 1 6 6 H 1.48499 * 109.46911 * 335.61482 * 3 2 1 7 7 C 1.38815 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 319.69891 * 7 2 1 9 9 N 1.36935 * 120.00049 * 139.70590 * 7 2 1 10 10 C 1.47157 * 120.97888 * 345.62063 * 9 7 2 11 11 C 1.53302 * 108.38043 * 230.51163 * 10 9 7 12 12 O 1.42963 * 109.22102 * 307.69434 * 11 10 9 13 13 C 1.42966 * 114.16616 * 62.58288 * 12 11 10 14 14 C 1.47155 * 120.98326 * 165.33179 * 9 7 2 15 15 H 1.08994 * 109.68264 * 249.20844 * 14 9 7 16 16 C 1.52990 * 109.68073 * 9.76883 * 14 9 7 17 17 N 1.46505 * 109.47021 * 296.12202 * 16 14 9 18 18 C 1.34778 * 119.99965 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00182 * 0.02562 * 18 17 16 20 20 C 1.50705 * 120.00035 * 180.02562 * 18 17 16 21 21 O 1.42897 * 109.46873 * 180.02562 * 20 18 17 22 22 C 1.35955 * 116.99526 * 180.02562 * 21 20 18 23 23 C 1.38664 * 120.06739 * 359.72315 * 22 21 20 24 24 C 1.38174 * 119.97133 * 179.74593 * 23 22 21 25 25 C 1.38255 * 120.09842 * 0.53262 * 24 23 22 26 26 C 1.38258 * 120.12424 * 359.74190 * 25 24 23 27 27 C 1.38331 * 120.03040 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.04857 * 179.97438 * 27 26 25 29 29 H 0.96994 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.68432 * 350.22852 * 10 9 7 31 31 H 1.08996 * 109.68695 * 110.75285 * 10 9 7 32 32 H 1.09000 * 109.51383 * 67.61839 * 11 10 9 33 33 H 1.08996 * 109.50987 * 187.72696 * 11 10 9 34 34 H 1.09003 * 109.50841 * 57.34199 * 13 12 11 35 35 H 1.09003 * 109.51218 * 177.49163 * 13 12 11 36 36 H 1.08999 * 109.47456 * 56.12640 * 16 14 9 37 37 H 1.08999 * 109.47137 * 176.12499 * 16 14 9 38 38 H 0.96999 * 120.00125 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47228 * 300.00724 * 20 18 17 40 40 H 1.08998 * 109.46543 * 60.00642 * 20 18 17 41 41 H 1.08000 * 120.01178 * 0.02562 * 23 22 21 42 42 H 1.08003 * 119.94979 * 180.27645 * 24 23 22 43 43 H 1.08001 * 119.94234 * 179.76529 * 25 24 23 44 44 H 1.08001 * 119.98728 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6163 1.9779 1.3934 5 1 3.4835 1.4772 -0.8151 6 1 1.3935 2.6839 -0.5781 7 6 2.0102 -1.2022 -0.0005 8 1 1.6625 -2.0268 0.6040 9 7 3.1359 -1.3426 -0.7675 10 6 3.4576 -0.3717 -1.8255 11 6 3.7484 -1.1435 -3.1178 12 8 4.7330 -2.1463 -2.8556 13 6 4.3214 -3.1380 -1.9117 14 6 4.0629 -2.4654 -0.5540 15 1 5.0005 -2.0938 -0.1408 16 6 3.4371 -3.4737 0.4116 17 7 3.2498 -2.8443 1.7212 18 6 2.7095 -3.5478 2.7359 19 8 2.3788 -4.7021 2.5651 20 6 2.5163 -2.9002 4.0829 21 8 1.9319 -3.8421 4.9848 22 6 1.6895 -3.4142 6.2523 23 6 2.0126 -2.1173 6.6216 24 6 1.7605 -1.6830 7.9088 25 6 1.1965 -2.5430 8.8328 26 6 0.8779 -3.8387 8.4705 27 6 1.1227 -4.2772 7.1816 28 9 0.8120 -5.5435 6.8274 29 1 -0.4850 0.8400 0.0004 30 1 2.6108 0.2969 -1.9800 31 1 4.3350 0.2075 -1.5379 32 1 2.8329 -1.6162 -3.4733 33 1 4.1214 -0.4556 -3.8765 34 1 3.4079 -3.6180 -2.2630 35 1 5.1074 -3.8853 -1.8027 36 1 2.4718 -3.7981 0.0230 37 1 4.0959 -4.3360 0.5138 38 1 3.5139 -1.9210 1.8578 39 1 3.4815 -2.5758 4.4719 40 1 1.8575 -2.0380 3.9803 41 1 2.4570 -1.4456 5.9020 42 1 2.0082 -0.6714 8.1948 43 1 1.0040 -2.2020 9.8393 44 1 0.4370 -4.5085 9.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673069886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:38 Heat of formation + Delta-G solvation = -80.194854 kcal Electronic energy + Delta-G solvation = -29540.303168 eV Core-core repulsion = 25181.881479 eV Total energy + Delta-G solvation = -4358.421690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.77890 -40.32503 -39.35765 -38.54964 -37.33311 -35.50742 -33.81791 -31.93158 -31.17802 -30.87268 -30.35743 -28.42564 -27.44573 -25.32475 -23.56112 -23.04450 -22.59558 -22.13089 -20.25053 -19.83957 -18.64252 -17.50308 -17.13127 -16.75521 -16.51807 -16.12965 -16.05026 -15.84365 -15.37672 -15.28486 -15.01427 -14.86057 -14.50865 -14.47727 -14.00518 -13.92013 -13.84953 -13.28378 -12.95793 -12.70609 -12.60916 -12.39616 -12.18812 -12.03112 -11.87269 -11.72752 -11.34294 -11.18481 -11.09302 -10.84833 -10.57310 -10.31784 -9.93853 -9.70825 -9.41922 -9.31348 -9.13923 -8.55608 -8.42429 -8.33856 -7.30929 -6.18271 -3.31945 0.93629 1.08087 2.59373 2.91437 3.24239 3.37151 3.39726 3.43615 3.77069 4.13864 4.27290 4.41189 4.53255 4.56429 4.62347 4.85679 4.99839 5.02216 5.05207 5.09273 5.19421 5.30406 5.34181 5.50589 5.60492 5.77842 5.78752 5.85431 5.88614 5.91142 5.96267 5.97912 6.08416 6.17633 6.20074 6.37774 6.44617 6.54486 6.71098 6.83554 7.14118 7.58140 7.65126 7.89692 8.10757 8.55731 8.71923 9.55560 9.91215 10.92755 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003034 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.866231 B = 9226.705335 C =10452.313212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.040 3.960 3 Si 0.812 3.188 4 H -0.293 1.293 5 H -0.248 1.248 6 H -0.296 1.296 7 C -0.290 4.290 8 H 0.103 0.897 9 N -0.601 5.601 10 C 0.113 3.887 11 C 0.041 3.959 12 O -0.389 6.389 13 C 0.055 3.945 14 C 0.130 3.870 15 H 0.046 0.954 16 C 0.136 3.864 17 N -0.696 5.696 18 C 0.516 3.484 19 O -0.531 6.531 20 C 0.040 3.960 21 O -0.280 6.280 22 C 0.103 3.897 23 C -0.184 4.184 24 C -0.089 4.089 25 C -0.134 4.134 26 C -0.118 4.118 27 C 0.069 3.931 28 F -0.130 7.130 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -2.096 11.346 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.162 4.162 3 Si 0.639 3.361 4 H -0.221 1.221 5 H -0.172 1.172 6 H -0.223 1.223 7 C -0.416 4.416 8 H 0.121 0.879 9 N -0.327 5.327 10 C -0.012 4.012 11 C -0.037 4.037 12 O -0.307 6.307 13 C -0.024 4.024 14 C 0.023 3.977 15 H 0.063 0.937 16 C 0.012 3.988 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.408 6.408 20 C -0.039 4.039 21 O -0.192 6.192 22 C 0.056 3.944 23 C -0.203 4.203 24 C -0.107 4.107 25 C -0.152 4.152 26 C -0.137 4.137 27 C 0.049 3.951 28 F -0.109 7.109 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.247 0.753 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.601 -3.107 11.016 13.212 hybrid contribution 0.137 1.823 0.236 1.843 sum 6.738 -1.284 11.252 13.177 Atomic orbital electron populations 1.70217 1.06177 1.26999 1.47325 1.24918 0.94516 0.97426 0.99326 0.88268 0.82466 0.86716 0.78674 1.22141 1.17247 1.22256 1.19053 0.98808 0.98679 1.25099 0.87922 1.44492 1.25126 1.26229 1.36857 1.22120 0.99292 0.92018 0.87817 1.23187 0.91768 0.90637 0.98105 1.87820 1.41656 1.39337 1.61919 1.22977 0.99992 0.90197 0.89261 1.21477 0.93164 0.89295 0.93718 0.93669 1.21237 1.01507 0.94384 0.81650 1.45753 1.62590 1.16458 1.10089 1.19735 0.78556 0.86710 0.85051 1.90725 1.49593 1.17115 1.83362 1.22591 0.99878 0.92576 0.88831 1.86223 1.76783 1.38779 1.17417 1.19130 0.97341 0.93110 0.84842 1.21274 1.05789 0.94508 0.98753 1.21027 0.97292 0.99979 0.92380 1.20913 1.01162 0.92899 1.00269 1.21015 1.01325 0.97533 0.93787 1.17018 1.05001 0.80168 0.92871 1.91526 1.90960 1.35992 1.92402 0.92722 0.90649 0.94519 0.93012 0.89802 0.92743 0.89417 0.90409 0.91740 0.75271 0.89082 0.88181 0.84184 0.84987 0.84933 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.41 13.97 55.49 0.78 -23.64 16 2 C 0.04 1.03 4.90 -17.43 -0.09 0.95 16 3 Si 0.81 18.65 26.36 -169.99 -4.48 14.17 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.25 -5.29 4.33 56.52 0.24 -5.04 16 6 H -0.30 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.29 -6.99 8.09 -15.06 -0.12 -7.11 16 8 H 0.10 2.62 5.30 -52.49 -0.28 2.35 16 9 N -0.60 -12.52 2.94 -164.06 -0.48 -13.01 16 10 C 0.11 2.26 4.41 -3.53 -0.02 2.24 16 11 C 0.04 0.71 6.99 37.31 0.26 0.97 16 12 O -0.39 -6.77 10.74 -35.23 -0.38 -7.15 16 13 C 0.05 0.87 6.31 37.53 0.24 1.10 16 14 C 0.13 2.25 3.19 -67.21 -0.21 2.03 16 15 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 16 C 0.14 2.32 4.42 -4.04 -0.02 2.30 16 17 N -0.70 -11.72 3.60 -60.29 -0.22 -11.94 16 18 C 0.52 9.21 7.91 -10.98 -0.09 9.12 16 19 O -0.53 -11.60 16.50 -14.36 -0.24 -11.83 16 20 C 0.04 0.57 5.22 36.01 0.19 0.76 16 21 O -0.28 -4.71 9.53 -39.51 -0.38 -5.09 16 22 C 0.10 1.46 6.69 -39.17 -0.26 1.20 16 23 C -0.18 -2.07 9.04 -39.45 -0.36 -2.43 16 24 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 25 C -0.13 -1.17 10.04 -39.57 -0.40 -1.56 16 26 C -0.12 -1.21 10.02 -39.54 -0.40 -1.61 16 27 C 0.07 0.95 7.31 -39.30 -0.29 0.67 16 28 F -0.13 -2.06 17.11 2.25 0.04 -2.02 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.08 1.63 4.88 -51.93 -0.25 1.38 16 31 H 0.04 0.74 6.82 -51.93 -0.35 0.38 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.54 7.54 -51.93 -0.39 1.15 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.41 6.60 7.60 -40.82 -0.31 6.29 16 39 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 40 H 0.10 1.37 7.67 -51.93 -0.40 0.97 16 41 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 42 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -32.43 358.97 -7.71 -40.15 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.81 Total: 7.52 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.95 Total: 7.43 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.08 Total: -48.58 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.99 Total: -24.07 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.48 Total: 14.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.43 -7.71 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673069886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.048 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds