Wall clock time and date at job start Tue Mar 31 2020 20:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00396 * 2 1 4 4 H 1.48507 * 109.46981 * 95.60769 * 3 2 1 5 5 H 1.48492 * 109.47381 * 215.60954 * 3 2 1 6 6 H 1.48499 * 109.46911 * 335.61482 * 3 2 1 7 7 C 1.38815 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 319.69891 * 7 2 1 9 9 N 1.36935 * 120.00049 * 139.70590 * 7 2 1 10 10 C 1.47157 * 120.97888 * 345.62063 * 9 7 2 11 11 C 1.53302 * 108.38043 * 230.51163 * 10 9 7 12 12 O 1.42963 * 109.22102 * 307.69434 * 11 10 9 13 13 C 1.42966 * 114.16616 * 62.58288 * 12 11 10 14 14 C 1.47155 * 120.98326 * 165.33179 * 9 7 2 15 15 H 1.08994 * 109.68264 * 249.20844 * 14 9 7 16 16 C 1.52990 * 109.68073 * 9.76883 * 14 9 7 17 17 N 1.46505 * 109.47021 * 296.12202 * 16 14 9 18 18 C 1.34778 * 119.99965 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00182 * 0.02562 * 18 17 16 20 20 C 1.50705 * 120.00035 * 180.02562 * 18 17 16 21 21 O 1.42897 * 109.46873 * 180.02562 * 20 18 17 22 22 C 1.35955 * 116.99526 * 180.02562 * 21 20 18 23 23 C 1.38664 * 120.06739 * 359.72315 * 22 21 20 24 24 C 1.38174 * 119.97133 * 179.74593 * 23 22 21 25 25 C 1.38255 * 120.09842 * 0.53262 * 24 23 22 26 26 C 1.38258 * 120.12424 * 359.74190 * 25 24 23 27 27 C 1.38331 * 120.03040 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.04857 * 179.97438 * 27 26 25 29 29 H 0.96994 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.68432 * 350.22852 * 10 9 7 31 31 H 1.08996 * 109.68695 * 110.75285 * 10 9 7 32 32 H 1.09000 * 109.51383 * 67.61839 * 11 10 9 33 33 H 1.08996 * 109.50987 * 187.72696 * 11 10 9 34 34 H 1.09003 * 109.50841 * 57.34199 * 13 12 11 35 35 H 1.09003 * 109.51218 * 177.49163 * 13 12 11 36 36 H 1.08999 * 109.47456 * 56.12640 * 16 14 9 37 37 H 1.08999 * 109.47137 * 176.12499 * 16 14 9 38 38 H 0.96999 * 120.00125 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47228 * 300.00724 * 20 18 17 40 40 H 1.08998 * 109.46543 * 60.00642 * 20 18 17 41 41 H 1.08000 * 120.01178 * 0.02562 * 23 22 21 42 42 H 1.08003 * 119.94979 * 180.27645 * 24 23 22 43 43 H 1.08001 * 119.94234 * 179.76529 * 25 24 23 44 44 H 1.08001 * 119.98728 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6163 1.9779 1.3934 5 1 3.4835 1.4772 -0.8151 6 1 1.3935 2.6839 -0.5781 7 6 2.0102 -1.2022 -0.0005 8 1 1.6625 -2.0268 0.6040 9 7 3.1359 -1.3426 -0.7675 10 6 3.4576 -0.3717 -1.8255 11 6 3.7484 -1.1435 -3.1178 12 8 4.7330 -2.1463 -2.8556 13 6 4.3214 -3.1380 -1.9117 14 6 4.0629 -2.4654 -0.5540 15 1 5.0005 -2.0938 -0.1408 16 6 3.4371 -3.4737 0.4116 17 7 3.2498 -2.8443 1.7212 18 6 2.7095 -3.5478 2.7359 19 8 2.3788 -4.7021 2.5651 20 6 2.5163 -2.9002 4.0829 21 8 1.9319 -3.8421 4.9848 22 6 1.6895 -3.4142 6.2523 23 6 2.0126 -2.1173 6.6216 24 6 1.7605 -1.6830 7.9088 25 6 1.1965 -2.5430 8.8328 26 6 0.8779 -3.8387 8.4705 27 6 1.1227 -4.2772 7.1816 28 9 0.8120 -5.5435 6.8274 29 1 -0.4850 0.8400 0.0004 30 1 2.6108 0.2969 -1.9800 31 1 4.3350 0.2075 -1.5379 32 1 2.8329 -1.6162 -3.4733 33 1 4.1214 -0.4556 -3.8765 34 1 3.4079 -3.6180 -2.2630 35 1 5.1074 -3.8853 -1.8027 36 1 2.4718 -3.7981 0.0230 37 1 4.0959 -4.3360 0.5138 38 1 3.5139 -1.9210 1.8578 39 1 3.4815 -2.5758 4.4719 40 1 1.8575 -2.0380 3.9803 41 1 2.4570 -1.4456 5.9020 42 1 2.0082 -0.6714 8.1948 43 1 1.0040 -2.2020 9.8393 44 1 0.4370 -4.5085 9.1940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673069886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:37 Heat of formation + Delta-G solvation = -102.416838 kcal Electronic energy + Delta-G solvation = -29541.266786 eV Core-core repulsion = 25181.881479 eV Total energy + Delta-G solvation = -4359.385307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.85556 -41.47033 -40.66803 -39.91427 -38.33992 -37.01696 -35.43515 -33.64108 -32.70788 -31.70268 -31.32875 -29.63139 -29.01488 -26.67004 -25.25770 -24.09036 -23.60513 -23.34517 -21.69983 -21.33168 -19.65665 -18.97589 -18.25471 -18.02832 -17.76065 -17.47375 -17.37159 -17.15827 -16.74399 -16.51567 -16.40480 -15.99511 -15.82446 -15.55337 -15.41712 -15.29743 -15.19574 -14.66738 -14.24360 -14.09960 -14.01501 -13.71933 -13.56037 -13.37761 -13.12791 -12.75850 -12.69610 -12.44067 -12.20789 -12.17737 -12.17100 -12.02014 -11.41103 -11.23374 -11.06522 -10.93387 -10.23608 -10.02812 -9.96672 -9.27953 -9.06236 -8.14453 -5.24431 0.10818 0.23365 1.39577 1.42915 1.54088 1.54901 1.55114 2.50681 2.56933 2.59312 2.81562 2.99754 3.23221 3.29975 3.54659 3.78170 3.88521 3.92941 3.99203 4.04583 4.13586 4.23418 4.26470 4.32240 4.36058 4.44921 4.49127 4.53657 4.59258 4.72727 4.78709 4.96012 4.96307 5.02470 5.07471 5.23991 5.24302 5.40709 5.42524 5.65332 5.81833 6.15803 6.16946 6.23118 6.51894 6.86469 7.16566 7.67066 8.05450 8.99658 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003034 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.866231 B = 9226.705335 C =10452.313212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.014 4.014 3 Si 0.873 3.127 4 H -0.297 1.297 5 H -0.219 1.219 6 H -0.316 1.316 7 C -0.260 4.260 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.107 3.893 11 C 0.048 3.952 12 O -0.389 6.389 13 C 0.055 3.945 14 C 0.132 3.868 15 H 0.067 0.933 16 C 0.139 3.861 17 N -0.689 5.689 18 C 0.510 3.490 19 O -0.579 6.579 20 C 0.046 3.954 21 O -0.318 6.318 22 C 0.070 3.930 23 C -0.189 4.189 24 C -0.083 4.083 25 C -0.122 4.122 26 C -0.114 4.114 27 C 0.030 3.970 28 F -0.154 7.154 29 H 0.257 0.743 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.125 0.875 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -0.511 12.560 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.212 4.212 3 Si 0.701 3.299 4 H -0.225 1.225 5 H -0.142 1.142 6 H -0.244 1.244 7 C -0.388 4.388 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.030 4.030 12 O -0.308 6.308 13 C -0.023 4.023 14 C 0.027 3.973 15 H 0.085 0.915 16 C 0.016 3.984 17 N -0.341 5.341 18 C 0.296 3.704 19 O -0.459 6.459 20 C -0.032 4.032 21 O -0.231 6.231 22 C 0.024 3.976 23 C -0.207 4.207 24 C -0.100 4.100 25 C -0.140 4.140 26 C -0.133 4.133 27 C 0.010 3.990 28 F -0.133 7.133 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.172 0.828 42 H 0.184 0.816 43 H 0.189 0.811 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.355 -1.504 12.219 15.462 hybrid contribution -0.685 1.265 -0.078 1.441 sum 8.670 -0.238 12.141 14.921 Atomic orbital electron populations 1.70321 1.07945 1.27132 1.51569 1.25389 0.94780 1.00268 1.00758 0.87312 0.81879 0.82191 0.78553 1.22477 1.14203 1.24379 1.18987 0.98911 0.97496 1.23407 0.90207 1.44617 1.25178 1.27349 1.36776 1.22191 0.98732 0.92133 0.88783 1.23132 0.91795 0.90840 0.97267 1.87835 1.41507 1.39362 1.62058 1.23091 1.01029 0.90354 0.87851 1.21672 0.92872 0.88045 0.94753 0.91513 1.21189 1.00181 0.95309 0.81771 1.45721 1.61973 1.16543 1.09880 1.20380 0.77434 0.86208 0.86371 1.90693 1.51627 1.19285 1.84342 1.22606 1.01924 0.91684 0.86984 1.86149 1.77835 1.40198 1.18939 1.19473 0.99360 0.94734 0.83992 1.21543 1.05602 0.93348 1.00217 1.21507 0.95715 1.01512 0.91307 1.21419 0.99004 0.91728 1.01840 1.21371 1.00530 0.98795 0.92567 1.17611 1.07111 0.79683 0.94595 1.91451 1.91461 1.37568 1.92809 0.93385 0.92570 0.93496 0.94099 0.86707 0.93789 0.85756 0.93929 0.89425 0.74656 0.85138 0.87659 0.82789 0.81596 0.81081 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.02 13.97 21.65 0.30 -53.72 16 2 C -0.01 -0.75 4.90 84.86 0.42 -0.34 16 3 Si 0.87 38.79 26.36 68.60 1.81 40.60 16 4 H -0.30 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.22 -8.57 4.33 99.48 0.43 -8.14 16 6 H -0.32 -15.01 7.11 99.48 0.71 -14.30 16 7 C -0.26 -12.61 8.09 84.03 0.68 -11.93 16 8 H 0.08 4.21 5.30 -2.91 -0.02 4.19 16 9 N -0.61 -24.75 2.94 -672.95 -1.98 -26.72 16 10 C 0.11 4.02 4.41 86.36 0.38 4.40 16 11 C 0.05 1.52 6.99 72.08 0.50 2.03 16 12 O -0.39 -12.26 10.74 -148.98 -1.60 -13.86 16 13 C 0.06 1.61 6.31 72.22 0.46 2.06 16 14 C 0.13 4.28 3.19 45.10 0.14 4.43 16 15 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.14 4.69 4.42 86.37 0.38 5.07 16 17 N -0.69 -23.09 3.60 -463.06 -1.67 -24.76 16 18 C 0.51 18.67 7.91 87.66 0.69 19.37 16 19 O -0.58 -26.48 16.50 16.00 0.26 -26.21 16 20 C 0.05 1.33 5.22 71.24 0.37 1.70 16 21 O -0.32 -11.17 9.53 -74.00 -0.71 -11.88 16 22 C 0.07 2.03 6.69 22.53 0.15 2.19 16 23 C -0.19 -3.94 9.04 22.36 0.20 -3.74 16 24 C -0.08 -1.24 10.04 22.26 0.22 -1.01 16 25 C -0.12 -1.69 10.04 22.28 0.22 -1.47 16 26 C -0.11 -2.17 10.02 22.30 0.22 -1.95 16 27 C 0.03 0.84 7.31 22.45 0.16 1.00 16 28 F -0.15 -5.20 17.11 44.97 0.77 -4.43 16 29 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 30 H 0.06 2.34 4.88 -2.39 -0.01 2.33 16 31 H 0.05 1.70 6.82 -2.39 -0.02 1.69 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.04 1.74 7.54 -2.39 -0.02 1.73 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.42 12.96 7.60 -92.71 -0.70 12.25 16 39 H 0.13 2.65 7.65 -2.39 -0.02 2.63 16 40 H 0.11 2.90 7.67 -2.39 -0.02 2.89 16 41 H 0.15 2.64 6.30 -2.91 -0.02 2.62 16 42 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -74.96 358.97 2.47 -72.49 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.07 Total: 26.70 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 5.21 Total: 21.80 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -3.34 Total: -105.20 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -2.04 Total: -51.95 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.77 Total: -4.43 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.81 Total: 40.60 kcal Total: -74.96 2.47 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673069886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.930 kcal (2) G-P(sol) polarization free energy of solvation -74.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds