Wall clock time and date at job start Tue Mar 31 2020 20:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99964 * 2 1 4 4 H 1.48504 * 109.46548 * 274.06169 * 3 2 1 5 5 H 1.48491 * 109.47245 * 34.06469 * 3 2 1 6 6 H 1.48506 * 109.46993 * 154.06693 * 3 2 1 7 7 C 1.38816 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 197.50196 * 7 2 1 9 9 N 1.36936 * 120.00289 * 17.50834 * 7 2 1 10 10 C 1.46921 * 120.63435 * 207.96034 * 9 7 2 11 11 C 1.53193 * 108.77787 * 233.62647 * 10 9 7 12 12 C 1.53039 * 109.31250 * 305.36666 * 11 10 9 13 13 C 1.52998 * 109.46101 * 181.38580 * 12 11 10 14 14 N 1.46504 * 115.54717 * 325.58002 * 13 12 11 15 15 C 1.34777 * 119.99941 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00031 * 179.72288 * 15 14 13 18 18 H 1.09003 * 109.47494 * 15.27485 * 17 15 14 19 19 F 1.39907 * 109.47433 * 255.27787 * 17 15 14 20 20 C 1.52997 * 109.47161 * 135.27644 * 17 15 14 21 21 F 1.39890 * 109.47390 * 59.99987 * 20 17 15 22 22 F 1.39905 * 109.47117 * 180.02562 * 20 17 15 23 23 F 1.39901 * 109.47073 * 299.99823 * 20 17 15 24 24 C 1.52998 * 117.50378 * 111.24803 * 13 12 11 25 25 C 1.52995 * 117.50181 * 179.91220 * 13 12 11 26 26 C 1.53038 * 109.54185 * 61.35940 * 12 11 10 27 27 C 1.46931 * 120.62968 * 27.97865 * 9 7 2 28 28 H 0.97000 * 120.00276 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58763 * 113.83507 * 10 9 7 30 30 H 1.09006 * 109.58344 * 353.41803 * 10 9 7 31 31 H 1.08993 * 109.50145 * 185.41028 * 11 10 9 32 32 H 1.08998 * 109.52005 * 65.33042 * 11 10 9 33 33 H 1.09006 * 109.45863 * 301.35524 * 12 11 10 34 34 H 0.97003 * 120.00132 * 359.97438 * 14 13 12 35 35 H 1.08993 * 117.50027 * 215.00294 * 24 13 12 36 36 H 1.09006 * 117.49449 * 0.02833 * 24 13 12 37 37 H 1.09001 * 117.49488 * 359.97141 * 25 13 12 38 38 H 1.08996 * 117.50300 * 144.96709 * 25 13 12 39 39 H 1.09009 * 109.49315 * 58.58540 * 26 12 11 40 40 H 1.08996 * 109.50012 * 178.68314 * 26 12 11 41 41 H 1.09007 * 109.58592 * 246.16462 * 27 9 7 42 42 H 1.09004 * 109.58309 * 6.58148 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0959 -1.3966 5 1 1.4933 2.6263 0.7842 6 1 3.5881 1.4169 0.6123 7 6 2.0103 -1.2022 0.0005 8 1 3.0528 -1.2237 0.2818 9 7 1.3732 -2.3608 -0.3557 10 6 1.8151 -3.6543 0.1831 11 6 2.0771 -4.6111 -0.9843 12 6 0.8273 -4.6906 -1.8639 13 6 1.0733 -5.6719 -3.0116 14 7 2.4425 -5.7055 -3.5316 15 6 2.7588 -6.5376 -4.5436 16 8 1.9100 -7.2589 -5.0235 17 6 4.1657 -6.5677 -5.0827 18 1 4.8351 -6.0726 -4.3791 19 9 4.2081 -5.9031 -6.3131 20 6 4.6083 -8.0200 -5.2719 21 9 3.7494 -8.6554 -6.1749 22 9 5.9147 -8.0479 -5.7719 23 9 4.5661 -8.6845 -4.0416 24 6 0.2906 -6.9865 -2.9972 25 6 -0.0664 -5.8938 -4.0080 26 6 0.5146 -3.3057 -2.4352 27 6 0.2349 -2.3341 -1.2844 28 1 -0.4850 0.8400 -0.0004 29 1 1.0380 -4.0669 0.8264 30 1 2.7321 -3.5172 0.7562 31 1 2.3127 -5.6021 -0.5965 32 1 2.9154 -4.2431 -1.5757 33 1 -0.0163 -5.0354 -1.2658 34 1 3.1213 -5.1284 -3.1481 35 1 0.7944 -7.8763 -3.3746 36 1 -0.3999 -7.1520 -2.1702 37 1 -0.9916 -5.3409 -3.8455 38 1 0.2024 -6.0643 -5.0504 39 1 1.3676 -2.9495 -3.0129 40 1 -0.3619 -3.3677 -3.0802 41 1 -0.6712 -2.6391 -0.7607 42 1 0.1093 -1.3260 -1.6795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677462955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:48 Heat of formation + Delta-G solvation = -197.612818 kcal Electronic energy + Delta-G solvation = -30968.487535 eV Core-core repulsion = 26063.117480 eV Total energy + Delta-G solvation = -4905.370055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.47796 -49.58069 -48.86058 -48.71474 -41.76509 -39.50537 -37.53263 -34.61946 -34.57463 -32.09784 -31.87660 -31.36838 -27.42837 -25.86365 -24.37456 -24.08200 -23.03265 -22.49716 -21.40387 -20.46473 -20.15904 -19.92034 -19.53607 -18.78076 -18.57880 -17.60236 -16.89674 -16.58506 -16.51388 -15.93891 -15.69976 -15.64193 -15.60479 -15.33698 -15.24785 -15.23905 -15.02212 -14.96941 -14.93885 -14.86554 -14.56136 -14.36071 -14.07136 -13.86618 -13.09191 -12.96297 -12.76408 -12.74612 -12.56339 -12.31045 -12.19652 -11.95657 -11.90291 -11.71362 -11.55297 -11.18960 -11.08749 -10.82724 -10.51027 -9.76200 -8.64284 -7.84351 -5.28826 0.74157 1.05781 1.48648 1.50669 1.57286 1.58768 2.23159 2.53869 2.63659 2.67136 2.90121 3.02667 3.29979 3.31708 3.55772 3.65470 3.73950 3.80474 3.98878 4.12238 4.34180 4.47374 4.56133 4.62083 4.77529 4.81651 4.95418 5.00541 5.06975 5.20150 5.24491 5.27635 5.31554 5.38991 5.40196 5.58547 5.69844 5.80804 6.11918 6.42907 6.73222 7.19038 7.91501 8.41945 9.21744 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017438 B = 0.003003 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.272280 B = 9322.830543 C = 9992.873903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.139 3.861 11 C -0.116 4.116 12 C -0.032 4.032 13 C 0.108 3.892 14 N -0.660 5.660 15 C 0.490 3.510 16 O -0.524 6.524 17 C 0.043 3.957 18 H 0.194 0.806 19 F -0.161 7.161 20 C 0.448 3.552 21 F -0.172 7.172 22 F -0.165 7.165 23 F -0.166 7.166 24 C -0.166 4.166 25 C -0.178 4.178 26 C -0.118 4.118 27 C 0.177 3.823 28 H 0.248 0.752 29 H 0.012 0.988 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.422 0.578 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.063 0.937 41 H -0.006 1.006 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.895 -16.054 -8.933 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.790 3.210 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.014 3.986 11 C -0.155 4.155 12 C -0.051 4.051 13 C 0.021 3.979 14 N -0.311 5.311 15 C 0.272 3.728 16 O -0.400 6.400 17 C 0.003 3.997 18 H 0.211 0.789 19 F -0.141 7.141 20 C 0.393 3.607 21 F -0.153 7.153 22 F -0.147 7.147 23 F -0.147 7.147 24 C -0.204 4.204 25 C -0.216 4.216 26 C -0.157 4.157 27 C 0.051 3.949 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.013 0.987 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.236 -16.438 -9.273 20.592 hybrid contribution 0.357 1.272 0.045 1.322 sum 8.592 -15.166 -9.227 19.723 Atomic orbital electron populations 1.70185 1.06681 1.25655 1.55680 1.25744 0.95910 1.01378 1.01564 0.85336 0.78364 0.80004 0.77259 1.21486 1.22663 1.19066 1.19548 0.93093 0.86065 1.40157 0.91249 1.44337 1.36358 1.02306 1.50316 1.21067 0.97447 0.85795 0.94282 1.21923 0.96748 0.99714 0.97105 1.20642 0.99370 0.92403 0.92656 1.20833 0.79620 0.99557 0.97914 1.45280 1.11891 1.40206 1.33734 1.20361 0.89450 0.81791 0.81214 1.90806 1.49381 1.41512 1.58298 1.22916 0.99834 0.90039 0.86929 0.78936 1.93018 1.97332 1.80362 1.43378 1.20405 0.75816 0.89517 0.74996 1.93277 1.70036 1.84034 1.67984 1.93266 1.36941 1.96864 1.87588 1.93259 1.96155 1.82561 1.42766 1.23454 1.02267 0.93021 1.01653 1.23352 0.98766 1.02604 0.96912 1.22020 1.00862 0.94904 0.97910 1.20569 0.87869 0.97525 0.88933 0.94305 0.96959 0.92443 0.89625 0.91454 0.89961 0.73797 0.88498 0.87223 0.87871 0.88885 0.92872 0.91878 0.98744 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.97 11.22 21.65 0.24 -53.73 16 2 C -0.05 -2.72 4.90 84.86 0.42 -2.31 16 3 Si 0.96 43.35 29.59 68.60 2.03 45.38 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.26 -13.38 9.58 84.03 0.81 -12.58 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.61 -28.12 2.99 -699.07 -2.09 -30.21 16 10 C 0.14 5.02 6.52 86.36 0.56 5.58 16 11 C -0.12 -2.98 4.83 30.67 0.15 -2.84 16 12 C -0.03 -0.84 2.28 -10.77 -0.02 -0.86 16 13 C 0.11 2.47 2.48 3.60 0.01 2.48 16 14 N -0.66 -12.70 5.39 -422.93 -2.28 -14.98 16 15 C 0.49 10.15 6.61 87.66 0.58 10.73 16 16 O -0.52 -14.24 11.08 -3.04 -0.03 -14.28 16 17 C 0.04 0.66 3.78 29.85 0.11 0.77 16 18 H 0.19 1.04 8.00 -2.39 -0.02 1.02 16 19 F -0.16 -3.06 17.03 44.97 0.77 -2.29 16 20 C 0.45 8.00 2.86 71.98 0.21 8.21 16 21 F -0.17 -4.03 15.95 44.97 0.72 -3.32 16 22 F -0.17 -2.79 17.30 44.97 0.78 -2.01 16 23 F -0.17 -2.96 17.02 44.97 0.77 -2.19 16 24 C -0.17 -3.78 9.37 30.62 0.29 -3.49 16 25 C -0.18 -4.37 8.91 30.62 0.27 -4.10 16 26 C -0.12 -3.89 5.22 30.67 0.16 -3.73 16 27 C 0.18 7.93 5.31 86.36 0.46 8.39 16 28 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 2.02 7.93 -2.38 -0.02 2.00 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.59 6.50 -2.39 -0.02 1.57 16 33 H 0.08 2.25 7.90 -2.38 -0.02 2.23 16 34 H 0.42 6.31 6.55 -92.71 -0.61 5.71 16 35 H 0.10 2.43 6.38 -2.39 -0.02 2.42 16 36 H 0.11 2.21 8.05 -2.38 -0.02 2.20 16 37 H 0.10 2.42 7.60 -2.39 -0.02 2.40 16 38 H 0.09 2.57 6.38 -2.39 -0.02 2.55 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 1.94 7.24 -2.39 -0.02 1.93 16 41 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 42 H 0.05 2.59 6.06 -2.38 -0.01 2.57 16 Total: -1.00 -65.68 348.89 5.36 -60.32 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.47 Total: 11.04 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 3.99 Total: 6.27 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.13 Total: -98.92 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.03 Total: -14.28 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 3.03 Total: -9.80 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.68 5.36 -60.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677462955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.294 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds