Wall clock time and date at job start Tue Mar 31 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35272 * 126.71182 * 2 1 4 4 C 1.41931 * 103.96235 * 180.11235 * 3 2 1 5 5 O 1.35708 * 126.87586 * 179.91479 * 4 3 2 6 6 C 1.42896 * 116.99903 * 179.70969 * 5 4 3 7 7 C 1.50700 * 109.47293 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 180.02562 * 9 7 6 11 11 C 1.53943 * 113.73499 * 253.76511 * 10 9 7 12 12 N 1.48183 * 86.10110 * 221.96228 * 11 10 9 13 13 C 1.46899 * 111.06982 * 137.52415 * 12 11 10 14 14 C 1.50695 * 109.47741 * 70.56185 * 13 12 11 15 15 O 1.21295 * 119.99605 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00459 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00376 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99548 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00583 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99257 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47210 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46826 * 120.00421 * 21 19 17 24 24 H 1.48498 * 109.47190 * 239.99761 * 21 19 17 25 25 C 1.47959 * 90.80177 * 24.59753 * 12 11 10 26 26 N 1.30617 * 106.24138 * 359.65017 * 4 3 2 27 27 O 1.20910 * 111.49911 * 0.22423 * 26 4 3 28 28 H 1.09002 * 109.47308 * 180.26095 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.25246 * 1 2 3 30 30 H 1.09005 * 109.47509 * 60.25598 * 1 2 3 31 31 H 1.08010 * 128.01593 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47379 * 59.99652 * 6 5 4 33 33 H 1.08997 * 109.47194 * 300.00161 * 6 5 4 34 34 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 35 35 H 1.08996 * 112.94371 * 25.33430 * 10 9 7 36 36 H 1.08998 * 113.75548 * 336.24437 * 11 10 9 37 37 H 1.08997 * 113.75910 * 107.60174 * 11 10 9 38 38 H 1.09003 * 109.47031 * 190.56703 * 13 12 11 39 39 H 1.09000 * 109.47380 * 310.55978 * 13 12 11 40 40 H 0.97002 * 119.99958 * 0.02562 * 16 14 13 41 41 H 0.97003 * 119.99598 * 179.97438 * 20 19 17 42 42 H 1.08997 * 113.75728 * 221.08480 * 25 12 11 43 43 H 1.08998 * 113.75350 * 89.72258 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7953 1.2218 -0.0054 6 6 5.9987 0.4514 -0.0013 7 6 7.1879 1.3771 -0.0057 8 8 7.0212 2.5784 -0.0112 9 7 8.4367 0.8700 -0.0025 10 6 9.5926 1.7700 -0.0061 11 6 10.3244 1.8332 -1.3590 12 7 11.5772 1.7995 -0.5683 13 6 12.5654 0.9028 -1.1826 14 6 13.0789 1.5193 -2.4581 15 8 12.6629 2.5998 -2.8198 16 7 14.0011 0.8707 -3.1966 17 6 14.4678 1.4314 -4.3573 18 1 14.0968 2.3932 -4.6797 19 6 15.4182 0.7626 -5.1190 20 7 15.8692 -0.4078 -4.7269 21 14 16.0547 1.5270 -6.7001 22 1 15.3935 2.8388 -6.9169 23 1 17.5230 1.7239 -6.5986 24 1 15.7540 0.6259 -7.8416 25 6 10.8774 1.1306 0.5506 26 7 3.4764 -0.7622 0.0037 27 8 2.3085 -1.0749 0.0053 28 1 -0.3634 -1.0277 0.0047 29 1 -0.3633 0.5177 0.8877 30 1 -0.3634 0.5099 -0.8923 31 1 2.0311 2.1264 -0.0004 32 1 6.0281 -0.1814 -0.8884 33 1 6.0273 -0.1732 0.8915 34 1 8.5700 -0.0907 0.0067 35 1 9.3703 2.7489 0.4184 36 1 10.1739 0.9510 -1.9813 37 1 10.1694 2.7673 -1.8989 38 1 13.3956 0.7500 -0.4929 39 1 12.0971 -0.0560 -1.4053 40 1 14.3340 0.0068 -2.9072 41 1 16.5324 -0.8750 -5.2588 42 1 11.1636 1.5044 1.5337 43 1 10.8891 0.0424 0.4881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692207264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:12 Heat of formation + Delta-G solvation = -27.384355 kcal Electronic energy + Delta-G solvation = -27583.997556 eV Core-core repulsion = 23247.785863 eV Total energy + Delta-G solvation = -4336.211693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.95884 -41.77191 -40.78391 -39.75283 -39.12600 -36.00755 -35.25061 -34.78755 -33.58822 -33.32440 -31.52621 -29.73733 -28.59110 -27.28516 -27.10044 -25.07960 -24.49074 -22.74218 -21.76296 -21.32471 -20.95313 -19.92282 -19.12225 -18.94732 -18.20770 -17.98690 -17.88709 -17.48766 -17.35209 -16.64873 -16.58023 -16.17581 -15.87364 -15.64785 -15.37759 -14.91915 -14.87341 -14.64286 -14.27777 -14.12847 -13.92295 -13.75028 -13.61268 -13.54605 -13.24112 -13.19203 -12.91742 -12.88434 -12.47779 -12.41261 -12.15413 -12.15184 -11.85465 -11.53211 -11.23811 -10.52807 -10.37806 -10.32168 -10.27515 -10.03742 -9.78186 -8.49568 -5.97990 0.42407 1.12392 1.17071 1.28583 1.34071 1.39752 1.53645 2.02365 2.09576 2.26368 2.34244 2.80343 3.08996 3.15884 3.18777 3.43992 3.48399 3.74857 3.83116 3.91491 3.93947 3.97963 4.06769 4.24965 4.32796 4.37049 4.40788 4.51976 4.64761 4.77460 4.79127 4.79242 4.89474 4.89830 5.25284 5.27155 5.30817 5.39007 5.78651 5.82573 6.02725 6.30197 6.57856 6.97688 7.10698 7.18948 7.53413 8.10003 8.67948 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.001636 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.868803 B =17108.320919 C =17760.977735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.254 4.254 4 C 0.191 3.809 5 O -0.282 6.282 6 C 0.050 3.950 7 C 0.519 3.481 8 O -0.565 6.565 9 N -0.695 5.695 10 C 0.130 3.870 11 C 0.004 3.996 12 N -0.481 5.481 13 C 0.027 3.973 14 C 0.436 3.564 15 O -0.622 6.622 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.277 1.277 23 H -0.270 1.270 24 H -0.269 1.269 25 C 0.013 3.987 26 N -0.430 5.430 27 O 0.091 5.909 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.194 0.806 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.423 0.577 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.117 0.883 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.411 -7.764 14.455 32.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.275 4.275 4 C -0.006 4.006 5 O -0.188 6.188 6 C -0.029 4.029 7 C 0.305 3.695 8 O -0.443 6.443 9 N -0.350 5.350 10 C 0.024 3.976 11 C -0.127 4.127 12 N -0.205 5.205 13 C -0.105 4.105 14 C 0.224 3.776 15 O -0.508 6.508 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.093 0.907 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.116 4.116 26 N -0.158 5.158 27 O 0.031 5.969 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.211 0.789 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.261 0.739 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.358 -6.453 14.244 31.512 hybrid contribution 0.613 -0.398 -1.159 1.370 sum -26.745 -6.851 13.085 30.553 Atomic orbital electron populations 1.20685 0.79963 1.06462 1.06119 1.25124 0.98030 0.84098 0.97940 1.22165 0.87489 1.03169 1.14702 1.22422 0.88658 0.88609 1.00938 1.86236 1.10968 1.32034 1.89538 1.22557 0.80749 0.92804 1.06748 1.20388 0.84877 0.88629 0.75630 1.90766 1.86235 1.17463 1.49852 1.45664 1.03720 1.11301 1.74285 1.22844 0.83693 0.95501 0.95583 1.24291 0.89782 1.01895 0.96685 1.68382 1.06328 1.39360 1.06413 1.22358 0.98830 0.95130 0.94157 1.20849 0.82663 0.86704 0.87410 1.90515 1.62222 1.24164 1.73901 1.41917 1.37021 1.20697 1.21343 1.19668 1.21892 1.04664 1.00192 0.90685 1.25990 0.96478 0.96156 1.02393 1.69666 1.31041 1.14437 1.40751 0.84898 0.78154 0.78049 0.77393 1.20138 1.19481 1.19462 1.24502 0.89564 1.00064 0.97445 1.74127 0.99055 1.14153 1.28478 1.84751 1.10125 1.32927 1.69049 0.88209 0.86907 0.87098 0.78868 0.86878 0.86016 0.73877 0.87476 0.90689 0.92264 0.86632 0.89655 0.76872 0.91250 0.86467 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.07 10.45 71.23 0.74 0.68 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -3.91 11.10 22.50 0.25 -3.66 16 4 C 0.19 4.13 8.01 85.79 0.69 4.81 16 5 O -0.28 -7.01 9.74 -71.25 -0.69 -7.70 16 6 C 0.05 0.92 6.14 71.24 0.44 1.36 16 7 C 0.52 12.27 7.91 87.66 0.69 12.96 16 8 O -0.57 -19.44 16.12 16.01 0.26 -19.18 16 9 N -0.70 -12.57 5.37 -446.12 -2.40 -14.96 16 10 C 0.13 3.07 4.39 46.56 0.20 3.28 16 11 C 0.00 0.12 6.58 86.37 0.57 0.68 16 12 N -0.48 -15.15 5.95 -912.22 -5.42 -20.57 16 13 C 0.03 0.88 5.31 85.56 0.45 1.34 16 14 C 0.44 20.90 7.59 87.66 0.67 21.56 16 15 O -0.62 -35.43 15.13 -3.08 -0.05 -35.48 16 16 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 17 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 20 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 21 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C 0.01 0.25 7.73 86.41 0.67 0.91 16 26 N -0.43 -8.91 11.54 -172.61 -1.99 -10.91 16 27 O 0.09 1.52 11.19 71.17 0.80 2.32 16 28 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.42 4.24 8.71 -92.71 -0.81 3.43 16 35 H 0.11 3.02 7.51 -2.39 -0.02 3.00 16 36 H 0.07 2.26 7.79 -2.39 -0.02 2.24 16 37 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 38 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.09 2.28 7.70 -2.39 -0.02 2.27 16 40 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 41 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 1.39 7.76 -2.39 -0.02 1.37 16 Total: -1.00 -84.78 378.09 -2.43 -87.21 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.46 Total: 28.09 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 6.84 Total: 25.75 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -11.15 Total: -126.40 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: 0.31 Total: -60.04 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -84.78 -2.43 -87.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692207264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.828 kcal (2) G-P(sol) polarization free energy of solvation -84.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds