Wall clock time and date at job start Tue Mar 31 2020 20:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47277 * 95.82305 * 3 2 1 5 5 H 1.48505 * 109.47080 * 215.81728 * 3 2 1 6 6 H 1.48496 * 109.47585 * 335.81770 * 3 2 1 7 7 C 1.38811 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99887 * 356.47452 * 7 2 1 9 9 N 1.36933 * 120.00168 * 176.47797 * 7 2 1 10 10 C 1.48297 * 128.21086 * 35.64273 * 9 7 2 11 11 H 1.09001 * 112.20621 * 343.86076 * 10 9 7 12 12 C 1.54604 * 104.26377 * 221.60285 * 10 9 7 13 13 C 1.54827 * 104.65099 * 334.74818 * 12 10 9 14 14 C 1.48290 * 128.21206 * 215.33168 * 9 7 2 15 15 H 1.09005 * 112.21042 * 16.13650 * 14 9 7 16 16 C 1.53156 * 107.56050 * 252.69024 * 14 9 7 17 17 C 1.53142 * 108.90857 * 296.11539 * 16 14 9 18 18 H 1.08997 * 109.43335 * 173.86586 * 17 16 14 19 19 C 1.53006 * 109.39788 * 293.75113 * 17 16 14 20 20 N 1.46491 * 109.47283 * 180.45291 * 19 17 16 21 21 C 1.34774 * 120.00036 * 180.02562 * 20 19 17 22 22 O 1.21275 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.50711 * 120.00085 * 180.02562 * 21 20 19 24 24 H 1.09002 * 109.46614 * 344.99363 * 23 21 20 25 25 F 1.39893 * 109.47421 * 104.99561 * 23 21 20 26 26 C 1.52992 * 109.46723 * 224.99840 * 23 21 20 27 27 F 1.39897 * 109.47725 * 59.99513 * 26 23 21 28 28 F 1.39905 * 109.47008 * 179.97438 * 26 23 21 29 29 F 1.39901 * 109.47371 * 299.99571 * 26 23 21 30 30 C 1.53143 * 109.69110 * 53.79676 * 17 16 14 31 31 H 0.97001 * 120.00049 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.38241 * 93.67613 * 12 10 9 33 33 H 1.08996 * 110.38478 * 216.04507 * 12 10 9 34 34 H 1.09004 * 110.33321 * 241.26216 * 13 12 10 35 35 H 1.09001 * 110.52729 * 118.83617 * 13 12 10 36 36 H 1.09004 * 109.63227 * 176.23875 * 16 14 9 37 37 H 1.09007 * 109.47864 * 55.89566 * 16 14 9 38 38 H 1.09007 * 109.46857 * 300.45332 * 19 17 16 39 39 H 1.09005 * 109.46693 * 60.45187 * 19 17 16 40 40 H 0.97003 * 120.00317 * 359.97438 * 20 19 17 41 41 H 1.09007 * 109.56953 * 186.29321 * 30 17 16 42 42 H 1.08998 * 109.67077 * 65.99183 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6207 1.9754 1.3929 5 1 3.4809 1.4787 -0.8194 6 1 1.3917 2.6850 -0.5735 7 6 2.0102 -1.2022 0.0005 8 1 1.4717 -2.1366 0.0585 9 7 3.3776 -1.2034 -0.0723 10 6 4.3291 -0.2366 0.5271 11 1 3.8387 0.6869 0.8351 12 6 5.3881 -0.0104 -0.5763 13 6 5.3412 -1.2985 -1.4341 14 6 4.2585 -2.1754 -0.7640 15 1 3.7122 -2.7895 -1.4800 16 6 4.9430 -3.0249 0.3108 17 6 5.8384 -2.1205 1.1626 18 1 6.2447 -2.6935 1.9960 19 6 6.9868 -1.5877 0.3033 20 7 7.8505 -0.7309 1.1193 21 6 8.9334 -0.1466 0.5694 22 8 9.1932 -0.3306 -0.6008 23 6 9.8223 0.7344 1.4091 24 1 9.3061 0.9964 2.3326 25 9 11.0040 0.0502 1.7132 26 6 10.1567 2.0094 0.6324 27 9 8.9751 2.6937 0.3281 28 9 10.9814 2.8276 1.4120 29 9 10.8192 1.6731 -0.5531 30 6 5.0191 -0.9452 1.7036 31 1 -0.4850 0.8401 -0.0004 32 1 5.1283 0.8598 -1.1791 33 1 6.3764 0.1143 -0.1341 34 1 6.3067 -1.8039 -1.4116 35 1 5.0583 -1.0641 -2.4604 36 1 5.5493 -3.7967 -0.1635 37 1 4.1865 -3.4897 0.9432 38 1 7.5678 -2.4240 -0.0857 39 1 6.5813 -1.0095 -0.5270 40 1 7.6426 -0.5834 2.0553 41 1 5.6793 -0.2447 2.2152 42 1 4.2662 -1.3129 2.4008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699976290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:33 Heat of formation + Delta-G solvation = -120.693415 kcal Electronic energy + Delta-G solvation = -32055.908593 eV Core-core repulsion = 27153.874014 eV Total energy + Delta-G solvation = -4902.034579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.44604 -49.53945 -48.83160 -48.68568 -42.97358 -40.44445 -36.47151 -34.80393 -33.24491 -32.70885 -32.30429 -31.80832 -28.50087 -25.89181 -25.07603 -24.74192 -22.51107 -22.25933 -21.52726 -20.63414 -19.98334 -19.90941 -19.55503 -18.90651 -18.47872 -18.05967 -17.64218 -16.86045 -16.69593 -15.90598 -15.72884 -15.62848 -15.57668 -15.43990 -15.27808 -15.22053 -14.94484 -14.92521 -14.81044 -14.78559 -14.19345 -14.16221 -13.97120 -13.68141 -13.51527 -13.29226 -13.12316 -12.73823 -12.70056 -12.48913 -12.17013 -11.88946 -11.50024 -11.42190 -11.21738 -11.09913 -11.00332 -10.85980 -10.62715 -9.65222 -8.79046 -8.15160 -5.58519 0.82679 1.18921 1.27225 1.39333 1.48289 1.67276 2.27668 2.41198 2.68199 2.76887 3.11721 3.17518 3.23946 3.37203 3.70334 3.76284 3.81871 3.85865 4.10843 4.14761 4.29875 4.34243 4.44969 4.56246 4.66606 4.77648 4.83395 4.88326 4.97707 5.05813 5.16800 5.21264 5.29578 5.33183 5.40639 5.46592 5.58462 5.88684 6.16789 6.19327 6.77851 6.84219 7.52222 8.28889 9.03314 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.003908 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.963567 B = 7163.298237 C = 8006.365174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.230 1.230 6 H -0.323 1.323 7 C -0.224 4.224 8 H 0.048 0.952 9 N -0.620 5.620 10 C 0.122 3.878 11 H 0.045 0.955 12 C -0.162 4.162 13 C -0.154 4.154 14 C 0.143 3.857 15 H 0.065 0.935 16 C -0.117 4.117 17 C -0.071 4.071 18 H 0.094 0.906 19 C 0.004 3.996 20 N -0.688 5.688 21 C 0.485 3.515 22 O -0.537 6.537 23 C 0.045 3.955 24 H 0.198 0.802 25 F -0.159 7.159 26 C 0.441 3.559 27 F -0.169 7.169 28 F -0.166 7.166 29 F -0.173 7.173 30 C -0.124 4.124 31 H 0.260 0.740 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.181 0.819 40 H 0.418 0.582 41 H 0.084 0.916 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.696 0.512 6.316 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.229 4.229 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.154 1.154 6 H -0.253 1.253 7 C -0.353 4.353 8 H 0.066 0.934 9 N -0.344 5.344 10 C 0.017 3.983 11 H 0.063 0.937 12 C -0.200 4.200 13 C -0.192 4.192 14 C 0.037 3.963 15 H 0.083 0.917 16 C -0.156 4.156 17 C -0.090 4.090 18 H 0.112 0.888 19 C -0.115 4.115 20 N -0.341 5.341 21 C 0.267 3.733 22 O -0.414 6.414 23 C 0.005 3.995 24 H 0.215 0.785 25 F -0.139 7.139 26 C 0.386 3.614 27 F -0.151 7.151 28 F -0.147 7.147 29 F -0.155 7.155 30 C -0.163 4.163 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.196 0.804 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.624 0.427 5.478 24.255 hybrid contribution -0.632 1.016 0.438 1.274 sum 22.992 1.443 5.916 23.785 Atomic orbital electron populations 1.69896 1.07520 1.27180 1.56642 1.26015 0.95753 1.01696 0.99389 0.85927 0.78858 0.78740 0.78433 1.20557 1.15430 1.25321 1.18402 0.80283 0.92678 1.43918 0.93412 1.45397 1.00023 1.30228 1.58715 1.22035 0.89998 0.92589 0.93664 0.93732 1.23657 1.00647 0.97701 0.97968 1.23456 1.00815 0.96201 0.98766 1.21758 0.90029 0.91295 0.93196 0.91716 1.21951 0.98317 0.97554 0.97825 1.21114 0.93651 0.96033 0.98198 0.88785 1.25092 0.90748 0.97116 0.98576 1.46132 1.24727 1.47559 1.15671 1.20334 0.82637 0.82326 0.88044 1.90845 1.71777 1.61575 1.17215 1.22928 0.85088 0.88348 1.03170 0.78516 1.93009 1.46987 1.80127 1.93826 1.20602 0.75479 0.86272 0.79054 1.93268 1.46898 1.81415 1.93495 1.93261 1.72778 1.74579 1.74116 1.93277 1.81138 1.92174 1.48879 1.22149 0.98912 0.97941 0.97309 0.93094 0.93235 0.86155 0.85827 0.92426 0.89452 0.92902 0.91004 0.80415 0.74363 0.89714 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.01 13.97 21.65 0.30 -60.71 16 2 C -0.03 -1.97 5.50 84.86 0.47 -1.50 16 3 Si 0.95 45.71 24.64 68.60 1.69 47.40 16 4 H -0.28 -12.72 6.95 99.48 0.69 -12.03 16 5 H -0.23 -10.07 4.29 99.48 0.43 -9.64 16 6 H -0.32 -16.29 7.11 99.48 0.71 -15.58 16 7 C -0.22 -12.45 10.83 84.03 0.91 -11.54 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 9 N -0.62 -27.13 2.54 -638.22 -1.62 -28.75 16 10 C 0.12 4.46 2.79 45.43 0.13 4.59 16 11 H 0.05 1.85 3.03 -2.39 -0.01 1.84 16 12 C -0.16 -5.03 5.44 31.76 0.17 -4.85 16 13 C -0.15 -4.53 5.74 31.76 0.18 -4.35 16 14 C 0.14 4.92 4.29 45.25 0.19 5.11 16 15 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 16 C -0.12 -3.09 5.35 30.69 0.16 -2.92 16 17 C -0.07 -1.52 2.76 -10.70 -0.03 -1.55 16 18 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 19 C 0.00 0.07 2.67 86.38 0.23 0.30 16 20 N -0.69 -10.50 4.39 -463.05 -2.03 -12.53 16 21 C 0.49 9.21 6.67 87.66 0.58 9.80 16 22 O -0.54 -14.80 15.60 -3.01 -0.05 -14.84 16 23 C 0.05 0.61 3.78 29.85 0.11 0.72 16 24 H 0.20 0.50 7.99 -2.39 -0.02 0.49 16 25 F -0.16 -2.55 17.03 44.97 0.77 -1.79 16 26 C 0.44 8.00 2.86 71.98 0.21 8.21 16 27 F -0.17 -3.32 17.02 44.97 0.77 -2.56 16 28 F -0.17 -2.78 17.30 44.97 0.78 -2.00 16 29 F -0.17 -4.17 15.95 44.97 0.72 -3.45 16 30 C -0.12 -3.34 5.28 30.88 0.16 -3.17 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.05 1.71 6.47 -2.39 -0.02 1.69 16 33 H 0.12 3.05 3.95 -2.39 -0.01 3.04 16 34 H 0.12 2.92 4.82 -2.38 -0.01 2.91 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.07 1.38 7.99 -2.38 -0.02 1.36 16 39 H 0.18 4.27 1.12 -109.72 -0.12 4.15 16 40 H 0.42 3.58 7.22 -92.71 -0.67 2.91 16 41 H 0.08 1.63 6.73 -2.38 -0.02 1.61 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.00 325.31 4.83 -69.17 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.02 Total: 11.23 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 3.48 Total: -1.17 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.35 Total: -101.98 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.05 Total: -14.84 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 3.03 Total: -9.81 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.69 Total: 47.40 kcal Total: -74.00 4.83 -69.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699976290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.522 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds