Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48508 * 109.47011 * 270.00098 * 3 2 1 5 5 H 1.48506 * 109.47072 * 29.99883 * 3 2 1 6 6 H 1.48496 * 109.47619 * 149.99974 * 3 2 1 7 7 C 1.38812 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99981 * 185.00357 * 7 2 1 9 9 N 1.36932 * 119.99791 * 5.00837 * 7 2 1 10 10 C 1.48297 * 128.20916 * 214.90369 * 9 7 2 11 11 H 1.08997 * 112.20761 * 343.87696 * 10 9 7 12 12 C 1.54606 * 104.81425 * 221.87256 * 10 9 7 13 13 C 1.55889 * 104.00118 * 334.81875 * 12 10 9 14 14 C 1.48295 * 128.21433 * 34.91071 * 9 7 2 15 15 H 1.09005 * 112.20887 * 16.72896 * 14 9 7 16 16 C 1.53697 * 107.27602 * 252.57960 * 14 9 7 17 17 C 1.53146 * 108.87910 * 295.99465 * 16 14 9 18 18 H 1.08998 * 109.39942 * 173.93513 * 17 16 14 19 19 C 1.53005 * 109.43443 * 293.82189 * 17 16 14 20 20 N 1.46493 * 109.47197 * 180.91271 * 19 17 16 21 21 C 1.34777 * 119.99619 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00544 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.99559 * 179.97438 * 21 20 19 24 24 H 1.09000 * 109.47570 * 14.99876 * 23 21 20 25 25 F 1.39905 * 109.47077 * 254.99788 * 23 21 20 26 26 C 1.52998 * 109.47132 * 135.00179 * 23 21 20 27 27 F 1.39895 * 109.47482 * 59.99569 * 26 23 21 28 28 F 1.39899 * 109.47620 * 180.02562 * 26 23 21 29 29 F 1.39905 * 109.46820 * 299.99766 * 26 23 21 30 30 C 1.53144 * 109.69137 * 53.89039 * 17 16 14 31 31 H 0.97004 * 120.00294 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.38021 * 93.43509 * 12 10 9 33 33 H 1.09003 * 110.37821 * 215.78768 * 12 10 9 34 34 H 1.08995 * 110.30258 * 241.11907 * 13 12 10 35 35 H 1.09002 * 110.32248 * 118.84662 * 13 12 10 36 36 H 1.09001 * 109.57178 * 176.17167 * 16 14 9 37 37 H 1.09003 * 109.56819 * 55.81006 * 16 14 9 38 38 H 1.09000 * 109.47109 * 60.90696 * 19 17 16 39 39 H 1.08999 * 109.46732 * 300.91471 * 19 17 16 40 40 H 0.97004 * 120.00492 * 359.97438 * 20 19 17 41 41 H 1.08995 * 109.57411 * 65.92756 * 30 17 16 42 42 H 1.09001 * 109.57056 * 186.17232 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0821 9 7 1.3295 -2.3858 -0.1025 10 6 1.6491 -3.6862 0.5347 11 1 2.6717 -3.7206 0.9105 12 6 1.3966 -4.7396 -0.5685 13 6 0.3593 -4.0572 -1.5112 14 6 0.0980 -2.6713 -0.8777 15 1 -0.1029 -1.9068 -1.6283 16 6 -1.0513 -2.8241 0.1313 17 6 -0.7739 -4.0418 1.0177 18 1 -1.5263 -4.0958 1.8045 19 6 -0.8329 -5.3134 0.1689 20 7 -0.5892 -6.4805 1.0201 21 6 -0.5930 -7.7174 0.4849 22 8 -0.7976 -7.8643 -0.7014 23 6 -0.3417 -8.9180 1.3604 24 1 -0.4432 -8.6319 2.4073 25 9 0.9520 -9.3993 1.1319 26 6 -1.3586 -10.0122 1.0298 27 9 -1.2283 -10.3794 -0.3138 28 9 -1.1258 -11.1265 1.8430 29 9 -2.6523 -9.5309 1.2583 30 6 0.6155 -3.9146 1.6492 31 1 -0.4851 0.8401 -0.0004 32 1 2.3199 -4.9545 -1.1066 33 1 0.9876 -5.6523 -0.1352 34 1 -0.5617 -4.6392 -1.5443 35 1 0.7746 -3.9447 -2.5127 36 1 -1.9901 -2.9682 -0.4036 37 1 -1.1153 -1.9291 0.7501 38 1 -0.0715 -5.2662 -0.6097 39 1 -1.8176 -5.3981 -0.2907 40 1 -0.4244 -6.3630 1.9688 41 1 0.6278 -3.0695 2.3374 42 1 0.8557 -4.8297 2.1904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699976291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = -116.063499 kcal Electronic energy + Delta-G solvation = -31638.470590 eV Core-core repulsion = 26736.636779 eV Total energy + Delta-G solvation = -4901.833811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.62725 -48.72568 -48.02129 -47.82635 -41.33770 -39.21679 -35.02371 -33.01893 -31.72108 -31.24661 -30.62444 -29.72308 -26.86876 -24.68135 -23.48758 -23.25589 -21.25544 -20.81345 -19.60576 -19.32496 -19.10559 -18.80438 -18.63569 -17.59166 -17.08687 -16.82164 -16.01160 -15.48553 -15.07478 -14.91523 -14.80598 -14.71370 -14.41104 -14.38398 -14.33689 -14.09924 -14.05263 -13.65139 -13.19283 -13.04899 -12.78863 -12.72825 -12.10113 -11.94304 -11.77323 -11.57770 -11.48390 -11.30784 -10.94147 -10.80908 -10.60027 -10.31061 -10.17821 -9.89005 -9.77398 -9.58144 -9.46764 -9.28739 -8.60308 -8.36154 -6.61867 -5.89315 -3.36224 1.70926 2.10350 2.59573 3.06134 3.32123 3.39305 3.39847 3.47390 3.53014 3.96564 4.17826 4.39612 4.45692 5.15201 5.20005 5.29675 5.41898 5.49773 5.64588 5.74307 5.83313 5.98508 6.01457 6.04835 6.19691 6.22433 6.31039 6.43002 6.55026 6.59518 6.64599 6.80663 6.90335 7.02559 7.09328 7.16127 7.38965 7.62803 7.76542 7.78178 8.25118 9.05297 9.64954 10.55781 11.23293 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.002851 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.554019 B = 9820.288084 C = 9963.665413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.013 3.987 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.065 0.935 9 N -0.578 5.578 10 C 0.149 3.851 11 H 0.065 0.935 12 C -0.162 4.162 13 C -0.172 4.172 14 C 0.186 3.814 15 H 0.081 0.919 16 C -0.114 4.114 17 C -0.085 4.085 18 H 0.053 0.947 19 C -0.001 4.001 20 N -0.697 5.697 21 C 0.485 3.515 22 O -0.499 6.499 23 C 0.037 3.963 24 H 0.143 0.857 25 F -0.153 7.153 26 C 0.447 3.553 27 F -0.154 7.154 28 F -0.171 7.171 29 F -0.168 7.168 30 C -0.123 4.123 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.199 0.801 39 H 0.057 0.943 40 H 0.399 0.601 41 H 0.066 0.934 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -16.699 5.242 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.300 5.300 10 C 0.041 3.959 11 H 0.083 0.917 12 C -0.200 4.200 13 C -0.210 4.210 14 C 0.079 3.921 15 H 0.099 0.901 16 C -0.154 4.154 17 C -0.103 4.103 18 H 0.071 0.929 19 C -0.119 4.119 20 N -0.348 5.348 21 C 0.265 3.735 22 O -0.374 6.374 23 C -0.004 4.004 24 H 0.161 0.839 25 F -0.134 7.134 26 C 0.391 3.609 27 F -0.135 7.135 28 F -0.152 7.152 29 F -0.149 7.149 30 C -0.163 4.163 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.214 0.786 39 H 0.076 0.924 40 H 0.234 0.766 41 H 0.085 0.915 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.413 -16.511 4.371 17.418 hybrid contribution 0.191 0.680 0.757 1.035 sum -3.223 -15.832 5.127 16.950 Atomic orbital electron populations 1.69862 1.05171 1.25496 1.53467 1.25279 0.95537 0.98198 0.99668 0.86250 0.79055 0.83438 0.77713 1.21399 1.21625 1.20419 1.18813 0.89642 0.81893 1.46221 0.91711 1.44947 1.28709 1.05203 1.51092 1.21540 0.95795 0.87606 0.90969 0.91731 1.23620 0.98578 0.99249 0.98540 1.23776 0.98522 0.99894 0.98798 1.21197 0.87329 0.91331 0.92264 0.90086 1.22140 0.97339 0.97042 0.98843 1.21285 0.97365 0.94146 0.97548 0.92871 1.25538 1.06329 0.82432 0.97560 1.46391 1.69423 1.05783 1.13237 1.19934 0.80452 0.84378 0.88704 1.90845 1.46858 1.85165 1.14505 1.22822 0.80085 0.92425 1.05097 0.83921 1.93024 1.35545 1.88495 1.96311 1.20332 0.81619 0.82782 0.76123 1.93313 1.95546 1.92094 1.32575 1.93247 1.94302 1.54819 1.72840 1.93252 1.39485 1.87797 1.94360 1.22185 0.95651 0.99527 0.98901 0.93570 0.92762 0.89308 0.89520 0.92538 0.94433 0.88099 0.78627 0.92439 0.76599 0.91478 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 10.38 55.49 0.58 -23.45 16 2 C 0.01 0.34 5.43 -17.43 -0.09 0.25 16 3 Si 0.91 20.79 29.56 -169.99 -5.02 15.77 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.24 -6.16 10.28 -15.06 -0.15 -6.32 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.58 -13.41 2.73 -152.76 -0.42 -13.82 16 10 C 0.15 2.83 4.28 -65.73 -0.28 2.55 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.16 -2.74 5.79 -24.34 -0.14 -2.88 16 13 C -0.17 -3.07 5.75 -24.34 -0.14 -3.21 16 14 C 0.19 3.97 3.12 -65.73 -0.20 3.76 16 15 H 0.08 1.98 7.66 -51.93 -0.40 1.58 16 16 C -0.11 -2.23 5.18 -26.29 -0.14 -2.37 16 17 C -0.08 -1.34 2.75 -90.47 -0.25 -1.59 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.00 -0.01 2.66 -4.04 -0.01 -0.03 16 20 N -0.70 -8.06 4.39 -60.30 -0.26 -8.33 16 21 C 0.49 6.08 6.67 -10.98 -0.07 6.00 16 22 O -0.50 -8.16 15.60 5.56 0.09 -8.07 16 23 C 0.04 0.35 3.78 -27.88 -0.11 0.24 16 24 H 0.14 0.68 7.99 -51.93 -0.42 0.27 16 25 F -0.15 -1.66 17.03 2.25 0.04 -1.63 16 26 C 0.45 4.71 2.86 37.16 0.11 4.81 16 27 F -0.15 -2.02 15.95 2.25 0.04 -1.98 16 28 F -0.17 -1.66 17.30 2.25 0.04 -1.62 16 29 F -0.17 -1.78 17.02 2.25 0.04 -1.75 16 30 C -0.12 -2.04 5.27 -26.29 -0.14 -2.18 16 31 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.36 4.04 -51.93 -0.21 1.15 16 34 H 0.09 1.43 4.83 -51.93 -0.25 1.18 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 2.34 6.67 -51.93 -0.35 2.00 16 38 H 0.20 3.10 1.13 -164.54 -0.19 2.92 16 39 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 40 H 0.40 3.50 7.25 -40.82 -0.30 3.20 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.04 0.50 6.76 -51.93 -0.35 0.15 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -28.99 334.43 -6.42 -35.42 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.95 Total: 5.38 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.62 Total: -0.96 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.11 Total: -45.60 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.15 Total: -6.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.99 -6.42 -35.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699976291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.645 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds