Wall clock time and date at job start Tue Mar 31 2020 20:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48508 * 109.47011 * 270.00098 * 3 2 1 5 5 H 1.48506 * 109.47072 * 29.99883 * 3 2 1 6 6 H 1.48496 * 109.47619 * 149.99974 * 3 2 1 7 7 C 1.38812 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99981 * 185.00357 * 7 2 1 9 9 N 1.36932 * 119.99791 * 5.00837 * 7 2 1 10 10 C 1.48297 * 128.20916 * 214.90369 * 9 7 2 11 11 H 1.08997 * 112.20761 * 343.87696 * 10 9 7 12 12 C 1.54606 * 104.81425 * 221.87256 * 10 9 7 13 13 C 1.55889 * 104.00118 * 334.81875 * 12 10 9 14 14 C 1.48295 * 128.21433 * 34.91071 * 9 7 2 15 15 H 1.09005 * 112.20887 * 16.72896 * 14 9 7 16 16 C 1.53697 * 107.27602 * 252.57960 * 14 9 7 17 17 C 1.53146 * 108.87910 * 295.99465 * 16 14 9 18 18 H 1.08998 * 109.39942 * 173.93513 * 17 16 14 19 19 C 1.53005 * 109.43443 * 293.82189 * 17 16 14 20 20 N 1.46493 * 109.47197 * 180.91271 * 19 17 16 21 21 C 1.34777 * 119.99619 * 180.02562 * 20 19 17 22 22 O 1.21276 * 120.00544 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.99559 * 179.97438 * 21 20 19 24 24 H 1.09000 * 109.47570 * 14.99876 * 23 21 20 25 25 F 1.39905 * 109.47077 * 254.99788 * 23 21 20 26 26 C 1.52998 * 109.47132 * 135.00179 * 23 21 20 27 27 F 1.39895 * 109.47482 * 59.99569 * 26 23 21 28 28 F 1.39899 * 109.47620 * 180.02562 * 26 23 21 29 29 F 1.39905 * 109.46820 * 299.99766 * 26 23 21 30 30 C 1.53144 * 109.69137 * 53.89039 * 17 16 14 31 31 H 0.97004 * 120.00294 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.38021 * 93.43509 * 12 10 9 33 33 H 1.09003 * 110.37821 * 215.78768 * 12 10 9 34 34 H 1.08995 * 110.30258 * 241.11907 * 13 12 10 35 35 H 1.09002 * 110.32248 * 118.84662 * 13 12 10 36 36 H 1.09001 * 109.57178 * 176.17167 * 16 14 9 37 37 H 1.09003 * 109.56819 * 55.81006 * 16 14 9 38 38 H 1.09000 * 109.47109 * 60.90696 * 19 17 16 39 39 H 1.08999 * 109.46732 * 300.91471 * 19 17 16 40 40 H 0.97004 * 120.00492 * 359.97438 * 20 19 17 41 41 H 1.08995 * 109.57411 * 65.92756 * 30 17 16 42 42 H 1.09001 * 109.57056 * 186.17232 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0821 9 7 1.3295 -2.3858 -0.1025 10 6 1.6491 -3.6862 0.5347 11 1 2.6717 -3.7206 0.9105 12 6 1.3966 -4.7396 -0.5685 13 6 0.3593 -4.0572 -1.5112 14 6 0.0980 -2.6713 -0.8777 15 1 -0.1029 -1.9068 -1.6283 16 6 -1.0513 -2.8241 0.1313 17 6 -0.7739 -4.0418 1.0177 18 1 -1.5263 -4.0958 1.8045 19 6 -0.8329 -5.3134 0.1689 20 7 -0.5892 -6.4805 1.0201 21 6 -0.5930 -7.7174 0.4849 22 8 -0.7976 -7.8643 -0.7014 23 6 -0.3417 -8.9180 1.3604 24 1 -0.4432 -8.6319 2.4073 25 9 0.9520 -9.3993 1.1319 26 6 -1.3586 -10.0122 1.0298 27 9 -1.2283 -10.3794 -0.3138 28 9 -1.1258 -11.1265 1.8430 29 9 -2.6523 -9.5309 1.2583 30 6 0.6155 -3.9146 1.6492 31 1 -0.4851 0.8401 -0.0004 32 1 2.3199 -4.9545 -1.1066 33 1 0.9876 -5.6523 -0.1352 34 1 -0.5617 -4.6392 -1.5443 35 1 0.7746 -3.9447 -2.5127 36 1 -1.9901 -2.9682 -0.4036 37 1 -1.1153 -1.9291 0.7501 38 1 -0.0715 -5.2662 -0.6097 39 1 -1.8176 -5.3981 -0.2907 40 1 -0.4244 -6.3630 1.9688 41 1 0.6278 -3.0695 2.3374 42 1 0.8557 -4.8297 2.1904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699976291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:37 Heat of formation + Delta-G solvation = -133.324108 kcal Electronic energy + Delta-G solvation = -31639.219066 eV Core-core repulsion = 26736.636779 eV Total energy + Delta-G solvation = -4902.582287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.42786 -49.50219 -48.81251 -48.66363 -42.69233 -40.34885 -36.33665 -34.65831 -33.08174 -32.40725 -32.05394 -31.27829 -28.34182 -25.91385 -24.92434 -24.67569 -22.34224 -22.13485 -21.04777 -20.56704 -20.01009 -19.87270 -19.54483 -18.77591 -18.35712 -17.79381 -17.35502 -16.70144 -16.40479 -16.00838 -15.95261 -15.64086 -15.56040 -15.30663 -15.20667 -14.98557 -14.92867 -14.88719 -14.54626 -14.48308 -14.19103 -13.96744 -13.69882 -13.35317 -13.11127 -13.08484 -12.82638 -12.73139 -12.66996 -12.43528 -12.27520 -11.95647 -11.60103 -11.34027 -11.12828 -11.00269 -10.90357 -10.77521 -10.49450 -9.61124 -8.45924 -7.86382 -5.34087 0.85952 1.21431 1.46757 1.48413 1.56112 1.70560 2.29071 2.49949 2.70814 2.80038 3.21954 3.31251 3.40174 3.63586 3.73546 3.93988 3.96122 4.05559 4.24030 4.29698 4.40786 4.57450 4.62348 4.73116 4.79102 4.91243 4.97004 5.05580 5.11157 5.16881 5.25288 5.39661 5.44497 5.54209 5.59853 5.64741 5.75582 6.01232 6.24313 6.38527 6.88407 7.12835 7.74201 8.66501 9.24115 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.002851 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.554019 B = 9820.288084 C = 9963.665413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.035 4.035 3 Si 0.963 3.037 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.059 0.941 9 N -0.602 5.602 10 C 0.139 3.861 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.163 4.163 14 C 0.180 3.820 15 H 0.036 0.964 16 C -0.109 4.109 17 C -0.073 4.073 18 H 0.075 0.925 19 C 0.011 3.989 20 N -0.685 5.685 21 C 0.485 3.515 22 O -0.541 6.541 23 C 0.046 3.954 24 H 0.199 0.801 25 F -0.160 7.160 26 C 0.444 3.556 27 F -0.174 7.174 28 F -0.165 7.165 29 F -0.169 7.169 30 C -0.115 4.115 31 H 0.248 0.752 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.185 0.815 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.038 0.962 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -18.833 6.902 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.233 4.233 3 Si 0.792 3.208 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.077 0.923 9 N -0.325 5.325 10 C 0.033 3.967 11 H 0.080 0.920 12 C -0.186 4.186 13 C -0.201 4.201 14 C 0.074 3.926 15 H 0.054 0.946 16 C -0.149 4.149 17 C -0.092 4.092 18 H 0.093 0.907 19 C -0.108 4.108 20 N -0.338 5.338 21 C 0.266 3.734 22 O -0.417 6.417 23 C 0.005 3.995 24 H 0.216 0.784 25 F -0.140 7.140 26 C 0.389 3.611 27 F -0.155 7.155 28 F -0.146 7.146 29 F -0.150 7.150 30 C -0.154 4.154 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.200 0.800 39 H 0.075 0.925 40 H 0.256 0.744 41 H 0.057 0.943 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.258 -18.674 6.069 19.904 hybrid contribution 0.150 1.311 0.213 1.337 sum -3.108 -17.363 6.283 18.724 Atomic orbital electron populations 1.70028 1.06081 1.25395 1.54609 1.25903 0.96311 1.00797 1.00247 0.85345 0.78140 0.80057 0.77253 1.21714 1.21980 1.19634 1.19028 0.89768 0.83504 1.45559 0.92341 1.45144 1.29023 1.05808 1.52495 1.21768 0.96523 0.86074 0.92338 0.92003 1.23561 0.98341 0.99207 0.97485 1.23733 0.99856 0.98058 0.98456 1.21149 0.87638 0.91928 0.91927 0.94570 1.21935 0.97055 0.97407 0.98479 1.21123 0.97585 0.93067 0.97439 0.90671 1.25038 1.05896 0.82639 0.97249 1.46127 1.68943 1.04788 1.13905 1.20391 0.79337 0.85154 0.88502 1.90842 1.48451 1.85870 1.16583 1.22938 0.79141 0.90218 1.07179 0.78374 1.93019 1.36019 1.88452 1.96511 1.20533 0.81931 0.83303 0.75346 1.93276 1.95653 1.92360 1.34254 1.93260 1.94263 1.54646 1.72475 1.93252 1.39687 1.87786 1.94266 1.22069 0.95096 1.00568 0.97716 0.94294 0.92693 0.86871 0.87558 0.93100 0.93570 0.92076 0.80016 0.92472 0.74420 0.94288 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 10.38 21.65 0.22 -50.89 16 2 C -0.04 -1.90 5.43 84.86 0.46 -1.44 16 3 Si 0.96 43.85 29.56 68.60 2.03 45.87 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.25 -13.30 10.28 84.03 0.86 -12.43 16 8 H 0.06 3.11 7.83 -2.91 -0.02 3.09 16 9 N -0.60 -28.44 2.73 -637.20 -1.74 -30.18 16 10 C 0.14 5.14 4.28 45.43 0.19 5.33 16 11 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.15 -4.71 5.79 32.14 0.19 -4.52 16 13 C -0.16 -5.73 5.75 32.14 0.18 -5.54 16 14 C 0.18 7.88 3.12 45.43 0.14 8.02 16 15 H 0.04 1.87 7.66 -2.38 -0.02 1.85 16 16 C -0.11 -4.28 5.18 30.88 0.16 -4.12 16 17 C -0.07 -2.16 2.75 -10.69 -0.03 -2.19 16 18 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.01 0.28 2.66 86.38 0.23 0.51 16 20 N -0.69 -12.74 4.39 -463.07 -2.03 -14.77 16 21 C 0.48 10.31 6.67 87.66 0.58 10.89 16 22 O -0.54 -16.32 15.60 -3.02 -0.05 -16.37 16 23 C 0.05 0.67 3.78 29.85 0.11 0.78 16 24 H 0.20 0.65 7.99 -2.39 -0.02 0.63 16 25 F -0.16 -2.87 17.03 44.97 0.77 -2.10 16 26 C 0.44 8.06 2.86 71.98 0.21 8.27 16 27 F -0.17 -4.28 15.95 44.97 0.72 -3.56 16 28 F -0.17 -2.73 17.30 44.97 0.78 -1.95 16 29 F -0.17 -3.11 17.02 44.97 0.77 -2.34 16 30 C -0.12 -3.54 5.27 30.88 0.16 -3.38 16 31 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.11 3.07 4.04 -2.39 -0.01 3.06 16 34 H 0.11 3.34 4.83 -2.39 -0.01 3.33 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.92 6.67 -2.39 -0.02 2.90 16 38 H 0.18 5.26 1.13 -108.16 -0.12 5.14 16 39 H 0.06 1.54 7.98 -2.39 -0.02 1.52 16 40 H 0.42 4.86 7.25 -92.71 -0.67 4.18 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.81 6.76 -2.39 -0.02 1.80 16 Total: -1.00 -66.61 334.43 5.23 -61.38 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.31 Total: 14.72 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 3.46 Total: 0.19 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -3.55 Total: -95.84 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 9 Polarization: -12.98 SS G_CDS: 3.03 Total: -9.95 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.61 5.23 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699976291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.941 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds