Wall clock time and date at job start Tue Mar 31 2020 20:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46914 * 299.99650 * 3 2 1 6 6 H 1.48504 * 109.47268 * 59.99397 * 3 2 1 7 7 C 1.38947 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00157 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00403 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00416 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47403 * 180.02562 * 12 10 9 14 14 C 1.47958 * 110.99763 * 169.99891 * 13 12 10 15 15 C 1.53943 * 86.17900 * 137.58357 * 14 13 12 16 16 C 1.53000 * 113.73148 * 221.81447 * 15 14 13 17 17 C 1.53002 * 109.46874 * 172.08457 * 16 15 14 18 18 O 1.42900 * 109.47027 * 175.27709 * 17 16 15 19 19 N 1.46500 * 113.73389 * 90.63630 * 15 14 13 20 20 C 1.34775 * 119.99834 * 65.13517 * 19 15 14 21 21 O 1.21613 * 120.00396 * 354.94650 * 20 19 15 22 22 C 1.47420 * 119.99816 * 175.21315 * 20 19 15 23 23 C 1.36091 * 126.44755 * 179.43616 * 22 20 19 24 24 O 1.34261 * 106.94704 * 179.84751 * 23 22 20 25 25 C 1.34048 * 108.22461 * 0.42543 * 24 23 22 26 26 N 1.29930 * 109.24491 * 359.73420 * 25 24 23 27 27 C 1.47960 * 110.99758 * 269.35735 * 13 12 10 28 28 H 0.97007 * 119.99471 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99514 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47008 * 59.99847 * 12 10 9 31 31 H 1.09001 * 109.46756 * 300.00466 * 12 10 9 32 32 H 1.09003 * 113.76269 * 23.26940 * 14 13 12 33 33 H 1.09000 * 113.86150 * 251.90769 * 14 13 12 34 34 H 1.08996 * 109.47090 * 292.08894 * 16 15 14 35 35 H 1.09005 * 109.47121 * 52.09021 * 16 15 14 36 36 H 1.08997 * 109.47704 * 295.28472 * 17 16 15 37 37 H 1.09005 * 109.46909 * 55.28195 * 17 16 15 38 38 H 0.96702 * 113.99835 * 179.97438 * 18 17 16 39 39 H 0.97001 * 120.00093 * 245.13569 * 19 15 14 40 40 H 1.08001 * 126.52534 * 0.02562 * 23 22 20 41 41 H 1.08007 * 125.37498 * 179.69311 * 25 24 23 42 42 H 1.09009 * 113.75382 * 108.10234 * 27 13 12 43 43 H 1.09000 * 113.76430 * 336.74112 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9796 0.0007 14 6 1.5084 -7.2665 0.2401 15 6 2.4124 -7.8389 -0.8668 16 6 1.6856 -8.7790 -1.8306 17 6 2.6132 -9.1323 -2.9949 18 8 1.9757 -10.0952 -3.8366 19 7 3.6736 -8.3943 -0.3696 20 6 3.6634 -9.4787 0.4305 21 8 2.6062 -9.9412 0.8146 22 6 4.9340 -10.1009 0.8450 23 6 5.0768 -11.1861 1.6537 24 8 6.3943 -11.4176 1.7688 25 6 7.0470 -10.4898 1.0546 26 7 6.1847 -9.6945 0.4960 27 6 2.5319 -6.3927 -1.3803 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6172 -4.9205 -0.8903 31 1 0.6165 -4.9209 0.8897 32 1 0.4501 -7.2528 -0.0206 33 1 1.6980 -7.6918 1.2256 34 1 1.4004 -9.6897 -1.3040 35 1 0.7923 -8.2862 -2.2144 36 1 2.8313 -8.2334 -3.5715 37 1 3.5425 -9.5486 -2.6057 38 1 2.5075 -10.3659 -4.5975 39 1 4.5160 -7.9814 -0.6163 40 1 4.2817 -11.7546 2.1130 41 1 8.1202 -10.4149 0.9592 42 1 3.5407 -6.1182 -1.6890 43 1 1.7730 -6.1233 -2.1149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700506189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:13 Heat of formation + Delta-G solvation = -49.979801 kcal Electronic energy + Delta-G solvation = -29142.542913 eV Core-core repulsion = 24805.351408 eV Total energy + Delta-G solvation = -4337.191505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.75199 -41.00281 -38.87028 -37.75226 -36.97893 -35.20100 -34.26162 -33.75580 -31.66709 -31.18147 -30.58454 -29.00603 -26.26279 -25.61819 -24.57804 -23.76387 -23.07782 -21.81554 -21.00420 -19.39295 -19.11693 -18.79071 -17.89505 -17.57057 -17.06285 -16.84446 -16.22478 -15.93327 -15.63282 -15.37596 -15.25266 -14.88972 -14.52627 -14.46110 -14.25900 -14.12703 -13.88727 -13.67122 -13.15641 -12.96427 -12.48619 -12.24266 -11.95733 -11.77925 -11.68085 -11.54605 -11.26878 -11.18654 -11.16371 -10.92306 -10.71690 -10.33172 -10.26083 -10.19667 -10.04350 -9.54326 -9.48736 -9.16665 -8.70668 -8.14601 -7.93450 -6.39443 -3.80035 0.80651 1.73408 2.32851 2.85975 3.10414 3.17519 3.27764 3.35071 3.69264 3.79691 3.92573 3.99151 4.22866 4.23874 4.50241 4.53810 4.78608 4.97092 5.00218 5.06297 5.16002 5.22428 5.26133 5.27825 5.38470 5.48550 5.53390 5.64371 5.70979 5.74445 5.77954 5.87862 5.90118 6.00588 6.28906 6.45173 6.56017 7.03444 7.13772 7.40052 7.41846 7.57464 8.01013 8.08875 8.64877 9.21090 9.57658 10.10048 10.78593 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002499 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.368779 B =11202.950295 C =12345.842367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.008 3.992 13 N -0.444 5.444 14 C 0.006 3.994 15 C 0.150 3.850 16 C -0.119 4.119 17 C 0.079 3.921 18 O -0.575 6.575 19 N -0.680 5.680 20 C 0.606 3.394 21 O -0.532 6.532 22 C -0.072 4.072 23 C 0.015 3.985 24 O -0.201 6.201 25 C 0.179 3.821 26 N -0.464 5.464 27 C 0.013 3.987 28 H 0.270 0.730 29 H 0.391 0.609 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.378 0.622 39 H 0.414 0.586 40 H 0.230 0.770 41 H 0.255 0.745 42 H 0.097 0.903 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.665 -23.726 -2.649 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.124 4.124 13 N -0.166 5.166 14 C -0.124 4.124 15 C 0.062 3.938 16 C -0.158 4.158 17 C 0.001 3.999 18 O -0.380 6.380 19 N -0.331 5.331 20 C 0.392 3.608 21 O -0.409 6.409 22 C -0.192 4.192 23 C -0.059 4.059 24 O -0.086 6.086 25 C -0.050 4.050 26 N -0.193 5.193 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.224 0.776 39 H 0.251 0.749 40 H 0.247 0.753 41 H 0.271 0.729 42 H 0.115 0.885 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.801 -23.053 -1.869 24.409 hybrid contribution -0.144 0.490 -0.572 0.767 sum 7.657 -22.563 -2.441 23.951 Atomic orbital electron populations 1.69626 1.05919 1.27968 1.50971 1.25252 0.95632 0.99674 0.97492 0.85812 0.79707 0.81218 0.77678 1.19242 1.20797 1.20777 1.19736 0.93344 0.82230 1.47297 0.87945 1.41886 1.09147 1.04601 1.64877 1.19677 0.88384 0.84380 0.84330 1.90519 1.13646 1.86985 1.54698 1.22505 0.94754 0.92988 1.02125 1.68436 1.30491 1.00467 1.17226 1.24333 0.96968 0.90635 1.00470 1.21713 0.85148 0.92424 0.94502 1.21775 0.98415 1.00982 0.94666 1.22102 0.95160 0.91157 0.91461 1.86470 1.47593 1.62428 1.41525 1.45324 1.09312 1.28968 1.49451 1.16681 0.85958 0.79972 0.78202 1.90822 1.30615 1.63941 1.55555 1.21821 0.92952 0.99442 1.04953 1.25319 0.83177 0.98263 0.99123 1.84452 1.18400 1.48406 1.57315 1.28157 1.00468 0.84803 0.91568 1.70785 0.99012 1.26596 1.22933 1.24346 1.03953 0.90594 0.92684 0.91982 0.77560 0.92237 0.89281 0.90347 0.88409 0.89523 0.89900 0.93382 0.93720 0.77568 0.74872 0.75337 0.72916 0.88497 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.45 10.71 7.83 -10.99 -0.09 10.63 16 11 O -0.58 -15.88 16.01 5.55 0.09 -15.79 16 12 C 0.01 0.15 5.28 -4.98 -0.03 0.12 16 13 N -0.44 -7.43 5.65 -239.55 -1.35 -8.79 16 14 C 0.01 0.08 6.80 -2.76 -0.02 0.06 16 15 C 0.15 1.85 0.61 -133.51 -0.08 1.77 16 16 C -0.12 -1.36 4.90 -26.73 -0.13 -1.49 16 17 C 0.08 0.80 6.86 37.16 0.26 1.06 16 18 O -0.57 -5.95 13.66 -35.23 -0.48 -6.43 16 19 N -0.68 -8.37 4.48 -49.75 -0.22 -8.59 16 20 C 0.61 7.80 7.38 -12.52 -0.09 7.70 16 21 O -0.53 -7.81 14.84 5.27 0.08 -7.73 16 22 C -0.07 -0.79 6.99 -83.02 -0.58 -1.37 16 23 C 0.02 0.13 11.95 29.96 0.36 0.49 16 24 O -0.20 -1.49 10.73 6.50 0.07 -1.42 16 25 C 0.18 1.20 13.19 51.96 0.69 1.88 16 26 N -0.46 -4.72 11.06 -11.48 -0.13 -4.85 16 27 C 0.01 0.19 7.11 -2.77 -0.02 0.17 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 30 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 31 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 32 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.10 1.48 7.25 -51.93 -0.38 1.11 16 34 H 0.09 1.13 7.19 -51.93 -0.37 0.76 16 35 H 0.08 0.90 8.11 -51.93 -0.42 0.47 16 36 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.04 0.45 7.54 -51.93 -0.39 0.06 16 38 H 0.38 2.16 9.12 45.56 0.42 2.57 16 39 H 0.41 4.97 8.41 -40.82 -0.34 4.62 16 40 H 0.23 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.26 0.41 8.06 -52.48 -0.42 -0.01 16 42 H 0.10 1.40 8.09 -51.92 -0.42 0.98 16 43 H 0.08 1.06 7.41 -51.93 -0.38 0.68 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -36.92 373.76 -5.26 -42.18 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -4.61 Total: 15.30 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 0.02 Total: 12.98 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -1.04 Total: -60.93 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.24 Total: -31.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.92 -5.26 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700506189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.803 kcal (2) G-P(sol) polarization free energy of solvation -36.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds