Wall clock time and date at job start Tue Mar 31 2020 20:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46914 * 299.99650 * 3 2 1 6 6 H 1.48504 * 109.47268 * 59.99397 * 3 2 1 7 7 C 1.38947 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00157 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00403 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00416 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47403 * 180.02562 * 12 10 9 14 14 C 1.47958 * 110.99763 * 169.99891 * 13 12 10 15 15 C 1.53943 * 86.17900 * 137.58357 * 14 13 12 16 16 C 1.53000 * 113.73148 * 221.81447 * 15 14 13 17 17 C 1.53002 * 109.46874 * 172.08457 * 16 15 14 18 18 O 1.42900 * 109.47027 * 175.27709 * 17 16 15 19 19 N 1.46500 * 113.73389 * 90.63630 * 15 14 13 20 20 C 1.34775 * 119.99834 * 65.13517 * 19 15 14 21 21 O 1.21613 * 120.00396 * 354.94650 * 20 19 15 22 22 C 1.47420 * 119.99816 * 175.21315 * 20 19 15 23 23 C 1.36091 * 126.44755 * 179.43616 * 22 20 19 24 24 O 1.34261 * 106.94704 * 179.84751 * 23 22 20 25 25 C 1.34048 * 108.22461 * 0.42543 * 24 23 22 26 26 N 1.29930 * 109.24491 * 359.73420 * 25 24 23 27 27 C 1.47960 * 110.99758 * 269.35735 * 13 12 10 28 28 H 0.97007 * 119.99471 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99514 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47008 * 59.99847 * 12 10 9 31 31 H 1.09001 * 109.46756 * 300.00466 * 12 10 9 32 32 H 1.09003 * 113.76269 * 23.26940 * 14 13 12 33 33 H 1.09000 * 113.86150 * 251.90769 * 14 13 12 34 34 H 1.08996 * 109.47090 * 292.08894 * 16 15 14 35 35 H 1.09005 * 109.47121 * 52.09021 * 16 15 14 36 36 H 1.08997 * 109.47704 * 295.28472 * 17 16 15 37 37 H 1.09005 * 109.46909 * 55.28195 * 17 16 15 38 38 H 0.96702 * 113.99835 * 179.97438 * 18 17 16 39 39 H 0.97001 * 120.00093 * 245.13569 * 19 15 14 40 40 H 1.08001 * 126.52534 * 0.02562 * 23 22 20 41 41 H 1.08007 * 125.37498 * 179.69311 * 25 24 23 42 42 H 1.09009 * 113.75382 * 108.10234 * 27 13 12 43 43 H 1.09000 * 113.76430 * 336.74112 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1981 -5.9796 0.0007 14 6 1.5084 -7.2665 0.2401 15 6 2.4124 -7.8389 -0.8668 16 6 1.6856 -8.7790 -1.8306 17 6 2.6132 -9.1323 -2.9949 18 8 1.9757 -10.0952 -3.8366 19 7 3.6736 -8.3943 -0.3696 20 6 3.6634 -9.4787 0.4305 21 8 2.6062 -9.9412 0.8146 22 6 4.9340 -10.1009 0.8450 23 6 5.0768 -11.1861 1.6537 24 8 6.3943 -11.4176 1.7688 25 6 7.0470 -10.4898 1.0546 26 7 6.1847 -9.6945 0.4960 27 6 2.5319 -6.3927 -1.3803 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6172 -4.9205 -0.8903 31 1 0.6165 -4.9209 0.8897 32 1 0.4501 -7.2528 -0.0206 33 1 1.6980 -7.6918 1.2256 34 1 1.4004 -9.6897 -1.3040 35 1 0.7923 -8.2862 -2.2144 36 1 2.8313 -8.2334 -3.5715 37 1 3.5425 -9.5486 -2.6057 38 1 2.5075 -10.3659 -4.5975 39 1 4.5160 -7.9814 -0.6163 40 1 4.2817 -11.7546 2.1130 41 1 8.1202 -10.4149 0.9592 42 1 3.5407 -6.1182 -1.6890 43 1 1.7730 -6.1233 -2.1149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700506189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:12 Heat of formation + Delta-G solvation = -86.166069 kcal Electronic energy + Delta-G solvation = -29144.112067 eV Core-core repulsion = 24805.351408 eV Total energy + Delta-G solvation = -4338.760659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.37601 -42.09656 -40.18502 -39.36053 -37.82267 -35.97865 -35.89008 -35.16151 -33.27409 -32.58689 -31.26526 -30.33968 -27.37340 -27.21567 -25.78018 -24.87537 -23.66764 -22.91803 -21.89143 -21.00814 -20.30624 -19.87670 -19.56206 -18.44600 -17.83002 -17.70157 -17.54312 -17.20437 -16.72347 -16.51311 -16.27937 -16.22419 -15.94828 -15.64078 -15.33680 -15.19701 -15.14011 -14.74957 -14.54850 -14.34153 -13.78324 -13.55121 -13.38649 -13.06683 -12.97472 -12.79374 -12.42674 -12.40921 -12.30291 -12.28535 -12.10712 -11.85676 -11.72451 -11.50042 -11.18814 -10.89762 -10.38060 -10.31852 -10.08182 -10.00212 -9.64646 -8.46392 -5.94916 0.11302 1.07697 1.36273 1.41222 1.55504 1.71195 2.02624 2.06544 2.23189 2.28256 2.69944 2.95861 3.12322 3.20217 3.26390 3.35658 3.78586 3.86452 3.89788 4.09017 4.12464 4.22428 4.28882 4.36161 4.39256 4.48010 4.54132 4.55451 4.64506 4.66544 4.69875 4.76439 4.91765 5.07672 5.17745 5.33046 5.41397 5.45782 5.83542 6.05675 6.28179 6.58519 6.61334 6.85085 7.05664 7.13843 7.57509 8.13849 8.71388 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002499 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.368779 B =11202.950295 C =12345.842367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.617 6.617 12 C 0.021 3.979 13 N -0.476 5.476 14 C 0.010 3.990 15 C 0.163 3.837 16 C -0.112 4.112 17 C 0.083 3.917 18 O -0.591 6.591 19 N -0.680 5.680 20 C 0.604 3.396 21 O -0.558 6.558 22 C -0.107 4.107 23 C 0.029 3.971 24 O -0.198 6.198 25 C 0.198 3.802 26 N -0.501 5.501 27 C 0.015 3.985 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.397 0.603 39 H 0.414 0.586 40 H 0.251 0.749 41 H 0.300 0.700 42 H 0.086 0.914 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 -24.452 -3.078 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.232 3.768 11 O -0.502 6.502 12 C -0.111 4.111 13 N -0.199 5.199 14 C -0.119 4.119 15 C 0.076 3.924 16 C -0.151 4.151 17 C 0.005 3.995 18 O -0.400 6.400 19 N -0.330 5.330 20 C 0.391 3.609 21 O -0.437 6.437 22 C -0.225 4.225 23 C -0.045 4.045 24 O -0.083 6.083 25 C -0.031 4.031 26 N -0.230 5.230 27 C -0.114 4.114 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.247 0.753 39 H 0.251 0.749 40 H 0.267 0.733 41 H 0.315 0.685 42 H 0.105 0.895 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.064 -23.791 -2.322 25.228 hybrid contribution -0.149 0.639 -0.423 0.781 sum 7.915 -23.152 -2.745 24.621 Atomic orbital electron populations 1.69683 1.06810 1.29173 1.50620 1.26028 0.96546 1.02367 0.96403 0.84883 0.78025 0.77164 0.78336 1.19827 1.19468 1.19709 1.19672 0.92604 0.84036 1.49701 0.90483 1.41954 1.09280 1.04700 1.65489 1.20732 0.88242 0.85807 0.82059 1.90486 1.15804 1.87901 1.56055 1.22392 0.94472 0.90039 1.04170 1.68378 1.31101 1.01071 1.19310 1.24341 0.98335 0.89005 1.00258 1.21548 0.84976 0.91986 0.93930 1.21689 0.98873 0.99896 0.94688 1.22019 0.94513 0.91675 0.91243 1.86415 1.48553 1.62484 1.42511 1.45347 1.09278 1.28957 1.49449 1.16964 0.86517 0.79741 0.77717 1.90792 1.31678 1.64667 1.56550 1.21714 0.92706 1.00996 1.07106 1.25703 0.83987 0.97191 0.97651 1.84497 1.17954 1.48516 1.57317 1.29190 1.01710 0.83008 0.89197 1.70747 0.99185 1.28303 1.24750 1.24394 1.03909 0.91290 0.91841 0.91343 0.77052 0.89336 0.87830 0.88167 0.90007 0.91194 0.88921 0.92196 0.94013 0.75309 0.74852 0.73307 0.68472 0.89543 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -29.97 5.29 -306.99 -1.62 -31.59 16 10 C 0.44 21.53 7.83 87.66 0.69 22.22 16 11 O -0.62 -34.94 16.01 -3.07 -0.05 -34.99 16 12 C 0.02 0.73 5.28 85.56 0.45 1.18 16 13 N -0.48 -15.73 5.65 -911.79 -5.15 -20.89 16 14 C 0.01 0.27 6.80 86.41 0.59 0.85 16 15 C 0.16 3.96 0.61 5.17 0.00 3.96 16 16 C -0.11 -2.45 4.90 30.60 0.15 -2.30 16 17 C 0.08 1.59 6.86 71.98 0.49 2.08 16 18 O -0.59 -11.35 13.66 -148.98 -2.04 -13.39 16 19 N -0.68 -16.93 4.48 -429.57 -1.93 -18.85 16 20 C 0.60 15.72 7.38 86.66 0.64 16.36 16 21 O -0.56 -16.58 14.84 -4.07 -0.06 -16.64 16 22 C -0.11 -2.33 6.99 40.41 0.28 -2.05 16 23 C 0.03 0.46 11.95 67.32 0.80 1.27 16 24 O -0.20 -2.55 10.73 0.36 0.00 -2.55 16 25 C 0.20 2.23 13.19 130.52 1.72 3.95 16 26 N -0.50 -9.83 11.06 -305.16 -3.38 -13.21 16 27 C 0.01 0.39 7.11 86.41 0.61 1.01 16 28 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 30 H 0.09 2.58 7.38 -2.39 -0.02 2.56 16 31 H 0.10 3.31 8.08 -2.39 -0.02 3.29 16 32 H 0.10 2.25 7.88 -2.39 -0.02 2.24 16 33 H 0.08 2.50 7.25 -2.39 -0.02 2.48 16 34 H 0.07 1.80 7.19 -2.39 -0.02 1.78 16 35 H 0.09 1.82 8.11 -2.38 -0.02 1.80 16 36 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 37 H 0.04 0.82 7.54 -2.38 -0.02 0.80 16 38 H 0.40 3.88 9.12 -74.06 -0.68 3.21 16 39 H 0.41 10.20 8.41 -92.71 -0.78 9.42 16 40 H 0.25 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.30 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.09 2.51 8.09 -2.38 -0.02 2.49 16 43 H 0.10 2.38 7.41 -2.39 -0.02 2.36 16 Total: -1.00 -81.19 373.76 -5.28 -86.47 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -1.09 Total: 40.09 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 7.72 Total: 30.06 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -11.79 Total: -134.43 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -2.14 Total: -67.57 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -81.19 -5.28 -86.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700506189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.303 kcal (2) G-P(sol) polarization free energy of solvation -81.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds