Wall clock time and date at job start Tue Mar 31 2020 20:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48506 * 109.47217 * 240.00021 * 3 2 1 5 5 H 1.48509 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47466 * 119.99608 * 3 2 1 7 7 C 1.38808 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.47663 * 134.45859 * 179.97438 * 9 7 2 11 11 C 1.53506 * 85.98278 * 204.29890 * 10 9 7 12 12 C 1.47666 * 134.45728 * 359.97438 * 9 7 2 13 13 C 1.52672 * 113.57300 * 222.23837 * 11 10 9 14 14 C 1.53335 * 109.11873 * 286.15916 * 13 11 10 15 15 N 1.46879 * 108.76122 * 307.59182 * 14 13 11 16 16 C 1.34775 * 120.46877 * 235.56796 * 15 14 13 17 17 O 1.21287 * 119.99658 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00210 * 359.97438 * 16 15 14 19 19 C 1.53007 * 109.47315 * 179.97438 * 18 16 15 20 20 F 1.39899 * 109.46952 * 300.00415 * 19 18 16 21 21 F 1.39899 * 109.46850 * 59.99851 * 19 18 16 22 22 C 1.52999 * 109.47292 * 180.02562 * 19 18 16 23 23 F 1.39900 * 109.46957 * 59.99675 * 22 19 18 24 24 F 1.39891 * 109.47158 * 180.02562 * 22 19 18 25 25 C 1.46892 * 119.05991 * 55.54381 * 15 14 13 26 26 C 1.52671 * 113.56917 * 91.01150 * 11 10 9 27 27 H 0.96999 * 120.00072 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.78825 * 90.03297 * 10 9 7 29 29 H 1.09003 * 113.79694 * 318.56796 * 10 9 7 30 30 H 1.08997 * 113.79047 * 41.42836 * 12 9 7 31 31 H 1.09001 * 113.78628 * 269.96571 * 12 9 7 32 32 H 1.08995 * 109.52934 * 46.05163 * 13 11 10 33 33 H 1.08997 * 109.52609 * 166.26866 * 13 11 10 34 34 H 1.09003 * 109.59058 * 187.80205 * 14 13 11 35 35 H 1.09006 * 109.58522 * 67.37209 * 14 13 11 36 36 H 1.08998 * 109.47539 * 300.00087 * 18 16 15 37 37 H 1.09003 * 109.47249 * 60.00211 * 18 16 15 38 38 H 1.09005 * 109.47090 * 300.00213 * 22 19 18 39 39 H 1.09001 * 109.58900 * 184.66718 * 25 15 14 40 40 H 1.08996 * 109.58981 * 64.23402 * 25 15 14 41 41 H 1.08997 * 109.52648 * 193.72513 * 26 11 10 42 42 H 1.08998 * 109.53249 * 313.95079 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.7214 -3.8106 0.0005 11 6 0.3480 -4.0810 -0.6296 12 6 -0.1042 -2.7567 0.0005 13 6 -0.3580 -5.3057 -0.0528 14 6 0.3230 -6.5735 -0.5819 15 7 0.3914 -6.4966 -2.0471 16 6 -0.1321 -7.4781 -2.8081 17 8 -0.0712 -7.4056 -4.0173 18 6 -0.7928 -8.6655 -2.1567 19 6 -1.2987 -9.6239 -3.2369 20 9 -2.2252 -8.9626 -4.0502 21 9 -0.2213 -10.0590 -4.0160 22 6 -1.9702 -10.8291 -2.5755 23 9 -3.0477 -10.3935 -1.7968 24 9 -2.4322 -11.7056 -3.5631 25 6 1.0378 -5.3346 -2.6712 26 6 0.3615 -4.0584 -2.1561 27 1 -0.4850 0.8400 -0.0004 28 1 1.8386 -4.2344 0.9980 29 1 2.5596 -4.0340 -0.6594 30 1 -0.7167 -2.1424 -0.6594 31 1 -0.5298 -2.8671 0.9980 32 1 -0.2938 -5.2845 1.0351 33 1 -1.4045 -5.3000 -0.3573 34 1 -0.2562 -7.4491 -0.2885 35 1 1.3306 -6.6452 -0.1723 36 1 -0.0712 -9.1805 -1.5227 37 1 -1.6326 -8.3266 -1.5501 38 1 -1.2486 -11.3445 -1.9415 39 1 0.9296 -5.3940 -3.7542 40 1 2.0954 -5.3195 -2.4078 41 1 -0.6617 -4.0124 -2.5289 42 1 0.9165 -3.1867 -2.5027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715315012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:40 Heat of formation + Delta-G solvation = -175.525843 kcal Electronic energy + Delta-G solvation = -30612.459311 eV Core-core repulsion = 25708.047019 eV Total energy + Delta-G solvation = -4904.412292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.20008 -48.94444 -47.83686 -47.31986 -40.46229 -38.80932 -35.88201 -33.42263 -32.48926 -31.09838 -30.52841 -28.15315 -26.78286 -25.09001 -23.77070 -23.49561 -22.52630 -21.32062 -19.83143 -18.94048 -18.80152 -18.07019 -17.53167 -17.11850 -16.81842 -16.75541 -16.47211 -15.61814 -15.42710 -14.90475 -14.83436 -14.70733 -14.54939 -14.24240 -14.07485 -13.85743 -13.82486 -13.73040 -13.61938 -13.46555 -13.26419 -12.74482 -12.61022 -12.43156 -12.37353 -12.12425 -11.77286 -11.30149 -11.13899 -11.07699 -10.90823 -10.85398 -10.42202 -10.24776 -10.03259 -9.74971 -9.61694 -9.39969 -8.80490 -8.57383 -6.88486 -5.77910 -3.09944 2.14337 2.38332 2.79172 3.16206 3.29768 3.38118 3.42524 3.43689 3.46998 3.52768 4.15376 4.23233 4.34534 4.43974 4.69302 4.79238 4.87920 4.95096 5.12351 5.24070 5.25507 5.41846 5.44483 5.62425 5.78012 5.83475 5.87449 6.08336 6.20319 6.23762 6.34706 6.54800 6.58906 6.75190 6.80598 7.20523 7.26613 7.34174 7.56267 7.95377 7.97516 9.03706 9.70020 10.59507 11.38919 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.002415 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.094908 B =11590.002834 C =11823.367415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.110 4.110 12 C 0.173 3.827 13 C -0.120 4.120 14 C 0.106 3.894 15 N -0.599 5.599 16 C 0.517 3.483 17 O -0.527 6.527 18 C -0.194 4.194 19 C 0.271 3.729 20 F -0.169 7.169 21 F -0.168 7.168 22 C 0.236 3.764 23 F -0.180 7.180 24 F -0.182 7.182 25 C 0.114 3.886 26 C -0.097 4.097 27 H 0.254 0.746 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -23.419 -0.806 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.159 4.159 14 C -0.017 4.017 15 N -0.333 5.333 16 C 0.303 3.697 17 O -0.404 6.404 18 C -0.234 4.234 19 C 0.233 3.767 20 F -0.149 7.149 21 F -0.149 7.149 22 C 0.181 3.819 23 F -0.161 7.161 24 F -0.163 7.163 25 C -0.007 4.007 26 C -0.135 4.135 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.795 -22.995 -1.509 23.214 hybrid contribution 0.326 0.995 0.243 1.075 sum -2.469 -22.000 -1.266 22.175 Atomic orbital electron populations 1.69800 1.04979 1.25420 1.56612 1.24758 0.95636 0.97446 1.02520 0.86236 0.78508 0.83316 0.77901 1.21103 1.21584 1.21267 1.18953 0.90177 0.82094 1.43890 0.90466 1.45935 1.02322 0.99152 1.86046 1.22587 0.94319 0.86711 0.96338 1.22403 0.98021 0.95555 0.95141 1.22226 0.88117 0.88310 0.96540 1.21842 0.99648 0.93747 1.00615 1.21875 1.01761 0.99093 0.78975 1.48051 1.57089 1.21107 1.07008 1.19764 0.79131 0.83488 0.87311 1.90796 1.57876 1.78228 1.13483 1.22875 1.05166 0.96697 0.98686 1.21577 0.79027 0.90166 0.85921 1.93144 1.65391 1.81663 1.74737 1.93126 1.55073 1.90007 1.76663 1.22841 0.86795 0.87909 0.84370 1.93076 1.58274 1.90220 1.74497 1.93080 1.90259 1.69691 1.63284 1.21759 0.96288 0.83902 0.98799 1.21496 1.01029 0.96793 0.94148 0.93621 0.95181 0.94175 0.90975 0.95745 0.90452 0.91632 0.90437 0.90656 0.85135 0.84735 0.83875 0.89193 0.91150 0.92031 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 11.39 55.49 0.63 -26.21 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -14.82 3.53 -179.78 -0.64 -15.45 16 10 C 0.13 2.35 7.72 -3.15 -0.02 2.33 16 11 C -0.11 -1.82 0.77 -154.43 -0.12 -1.94 16 12 C 0.17 3.84 6.64 -3.17 -0.02 3.82 16 13 C -0.12 -1.46 5.26 -26.73 -0.14 -1.60 16 14 C 0.11 0.99 6.22 -3.66 -0.02 0.97 16 15 N -0.60 -7.15 2.94 -172.65 -0.51 -7.66 16 16 C 0.52 6.41 7.46 -10.99 -0.08 6.33 16 17 O -0.53 -8.78 14.22 5.55 0.08 -8.70 16 18 C -0.19 -1.47 3.51 -27.88 -0.10 -1.57 16 19 C 0.27 2.59 1.40 -26.73 -0.04 2.56 16 20 F -0.17 -2.25 16.10 2.25 0.04 -2.21 16 21 F -0.17 -1.93 16.12 2.25 0.04 -1.89 16 22 C 0.24 1.53 4.83 37.16 0.18 1.71 16 23 F -0.18 -1.34 16.80 2.25 0.04 -1.31 16 24 F -0.18 -1.67 17.30 2.25 0.04 -1.63 16 25 C 0.11 1.59 6.30 -3.65 -0.02 1.56 16 26 C -0.10 -1.57 5.21 -26.72 -0.14 -1.71 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.04 0.72 7.41 -51.93 -0.38 0.34 16 30 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 31 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.45 5.89 -51.93 -0.31 0.15 16 35 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.13 0.47 7.90 -51.93 -0.41 0.06 16 37 H 0.13 0.78 7.38 -51.93 -0.38 0.39 16 38 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 40 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.60 351.92 -6.30 -40.90 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -5.52 Total: -3.92 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.79 Total: 5.90 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.51 Total: -49.32 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.15 Total: -7.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.60 -6.30 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715315012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.622 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds