Wall clock time and date at job start Tue Mar 31 2020 20:42:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86797 * 119.99796 * 2 1
4 4 H 1.48506 * 109.47217 * 240.00021 * 3 2 1
5 5 H 1.48509 * 109.47281 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47466 * 119.99608 * 3 2 1
7 7 C 1.38808 * 120.00023 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1
9 9 N 1.36932 * 120.00272 * 0.02562 * 7 2 1
10 10 C 1.47663 * 134.45859 * 179.97438 * 9 7 2
11 11 C 1.53506 * 85.98278 * 204.29890 * 10 9 7
12 12 C 1.47666 * 134.45728 * 359.97438 * 9 7 2
13 13 C 1.52672 * 113.57300 * 222.23837 * 11 10 9
14 14 C 1.53335 * 109.11873 * 286.15916 * 13 11 10
15 15 N 1.46879 * 108.76122 * 307.59182 * 14 13 11
16 16 C 1.34775 * 120.46877 * 235.56796 * 15 14 13
17 17 O 1.21287 * 119.99658 * 179.97438 * 16 15 14
18 18 C 1.50695 * 120.00210 * 359.97438 * 16 15 14
19 19 C 1.53007 * 109.47315 * 179.97438 * 18 16 15
20 20 F 1.39899 * 109.46952 * 300.00415 * 19 18 16
21 21 F 1.39899 * 109.46850 * 59.99851 * 19 18 16
22 22 C 1.52999 * 109.47292 * 180.02562 * 19 18 16
23 23 F 1.39900 * 109.46957 * 59.99675 * 22 19 18
24 24 F 1.39891 * 109.47158 * 180.02562 * 22 19 18
25 25 C 1.46892 * 119.05991 * 55.54381 * 15 14 13
26 26 C 1.52671 * 113.56917 * 91.01150 * 11 10 9
27 27 H 0.96999 * 120.00072 * 0.02562 * 1 2 3
28 28 H 1.09002 * 113.78825 * 90.03297 * 10 9 7
29 29 H 1.09003 * 113.79694 * 318.56796 * 10 9 7
30 30 H 1.08997 * 113.79047 * 41.42836 * 12 9 7
31 31 H 1.09001 * 113.78628 * 269.96571 * 12 9 7
32 32 H 1.08995 * 109.52934 * 46.05163 * 13 11 10
33 33 H 1.08997 * 109.52609 * 166.26866 * 13 11 10
34 34 H 1.09003 * 109.59058 * 187.80205 * 14 13 11
35 35 H 1.09006 * 109.58522 * 67.37209 * 14 13 11
36 36 H 1.08998 * 109.47539 * 300.00087 * 18 16 15
37 37 H 1.09003 * 109.47249 * 60.00211 * 18 16 15
38 38 H 1.09005 * 109.47090 * 300.00213 * 22 19 18
39 39 H 1.09001 * 109.58900 * 184.66718 * 25 15 14
40 40 H 1.08996 * 109.58981 * 64.23402 * 25 15 14
41 41 H 1.08997 * 109.52648 * 193.72513 * 26 11 10
42 42 H 1.08998 * 109.53249 * 313.95079 * 26 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1038 1.6966 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3257 -2.3880 0.0005
10 6 1.7214 -3.8106 0.0005
11 6 0.3480 -4.0810 -0.6296
12 6 -0.1042 -2.7567 0.0005
13 6 -0.3580 -5.3057 -0.0528
14 6 0.3230 -6.5735 -0.5819
15 7 0.3914 -6.4966 -2.0471
16 6 -0.1321 -7.4781 -2.8081
17 8 -0.0712 -7.4056 -4.0173
18 6 -0.7928 -8.6655 -2.1567
19 6 -1.2987 -9.6239 -3.2369
20 9 -2.2252 -8.9626 -4.0502
21 9 -0.2213 -10.0590 -4.0160
22 6 -1.9702 -10.8291 -2.5755
23 9 -3.0477 -10.3935 -1.7968
24 9 -2.4322 -11.7056 -3.5631
25 6 1.0378 -5.3346 -2.6712
26 6 0.3615 -4.0584 -2.1561
27 1 -0.4850 0.8400 -0.0004
28 1 1.8386 -4.2344 0.9980
29 1 2.5596 -4.0340 -0.6594
30 1 -0.7167 -2.1424 -0.6594
31 1 -0.5298 -2.8671 0.9980
32 1 -0.2938 -5.2845 1.0351
33 1 -1.4045 -5.3000 -0.3573
34 1 -0.2562 -7.4491 -0.2885
35 1 1.3306 -6.6452 -0.1723
36 1 -0.0712 -9.1805 -1.5227
37 1 -1.6326 -8.3266 -1.5501
38 1 -1.2486 -11.3445 -1.9415
39 1 0.9296 -5.3940 -3.7542
40 1 2.0954 -5.3195 -2.4078
41 1 -0.6617 -4.0124 -2.5289
42 1 0.9165 -3.1867 -2.5027
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715315012.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:42:40
Heat of formation + Delta-G solvation = -175.525843 kcal
Electronic energy + Delta-G solvation = -30612.459311 eV
Core-core repulsion = 25708.047019 eV
Total energy + Delta-G solvation = -4904.412292 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.136 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-50.20008 -48.94444 -47.83686 -47.31986 -40.46229 -38.80932 -35.88201 -33.42263
-32.48926 -31.09838 -30.52841 -28.15315 -26.78286 -25.09001 -23.77070 -23.49561
-22.52630 -21.32062 -19.83143 -18.94048 -18.80152 -18.07019 -17.53167 -17.11850
-16.81842 -16.75541 -16.47211 -15.61814 -15.42710 -14.90475 -14.83436 -14.70733
-14.54939 -14.24240 -14.07485 -13.85743 -13.82486 -13.73040 -13.61938 -13.46555
-13.26419 -12.74482 -12.61022 -12.43156 -12.37353 -12.12425 -11.77286 -11.30149
-11.13899 -11.07699 -10.90823 -10.85398 -10.42202 -10.24776 -10.03259 -9.74971
-9.61694 -9.39969 -8.80490 -8.57383 -6.88486 -5.77910 -3.09944 2.14337
2.38332 2.79172 3.16206 3.29768 3.38118 3.42524 3.43689 3.46998
3.52768 4.15376 4.23233 4.34534 4.43974 4.69302 4.79238 4.87920
4.95096 5.12351 5.24070 5.25507 5.41846 5.44483 5.62425 5.78012
5.83475 5.87449 6.08336 6.20319 6.23762 6.34706 6.54800 6.58906
6.75190 6.80598 7.20523 7.26613 7.34174 7.56267 7.95377 7.97516
9.03706 9.70020 10.59507 11.38919
Molecular weight = 338.14amu
Principal moments of inertia in cm(-1)
A = 0.032025 B = 0.002415 C = 0.002368
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 874.094908 B =11590.002834 C =11823.367415
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.007 4.007
3 Si 0.910 3.090
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.286 1.286
7 C -0.223 4.223
8 H 0.078 0.922
9 N -0.609 5.609
10 C 0.126 3.874
11 C -0.110 4.110
12 C 0.173 3.827
13 C -0.120 4.120
14 C 0.106 3.894
15 N -0.599 5.599
16 C 0.517 3.483
17 O -0.527 6.527
18 C -0.194 4.194
19 C 0.271 3.729
20 F -0.169 7.169
21 F -0.168 7.168
22 C 0.236 3.764
23 F -0.180 7.180
24 F -0.182 7.182
25 C 0.114 3.886
26 C -0.097 4.097
27 H 0.254 0.746
28 H 0.031 0.969
29 H 0.040 0.960
30 H 0.072 0.928
31 H 0.025 0.975
32 H 0.077 0.923
33 H 0.065 0.935
34 H 0.077 0.923
35 H 0.075 0.925
36 H 0.131 0.869
37 H 0.135 0.865
38 H 0.144 0.856
39 H 0.090 0.910
40 H 0.070 0.930
41 H 0.061 0.939
42 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.839 -23.419 -0.806 23.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.204 4.204
3 Si 0.740 3.260
4 H -0.211 1.211
5 H -0.216 1.216
6 H -0.213 1.213
7 C -0.351 4.351
8 H 0.095 0.905
9 N -0.335 5.335
10 C 0.000 4.000
11 C -0.111 4.111
12 C 0.048 3.952
13 C -0.159 4.159
14 C -0.017 4.017
15 N -0.333 5.333
16 C 0.303 3.697
17 O -0.404 6.404
18 C -0.234 4.234
19 C 0.233 3.767
20 F -0.149 7.149
21 F -0.149 7.149
22 C 0.181 3.819
23 F -0.161 7.161
24 F -0.163 7.163
25 C -0.007 4.007
26 C -0.135 4.135
27 H 0.064 0.936
28 H 0.048 0.952
29 H 0.058 0.942
30 H 0.090 0.910
31 H 0.043 0.957
32 H 0.095 0.905
33 H 0.084 0.916
34 H 0.096 0.904
35 H 0.093 0.907
36 H 0.149 0.851
37 H 0.153 0.847
38 H 0.161 0.839
39 H 0.108 0.892
40 H 0.089 0.911
41 H 0.080 0.920
42 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -2.795 -22.995 -1.509 23.214
hybrid contribution 0.326 0.995 0.243 1.075
sum -2.469 -22.000 -1.266 22.175
Atomic orbital electron populations
1.69800 1.04979 1.25420 1.56612 1.24758 0.95636 0.97446 1.02520
0.86236 0.78508 0.83316 0.77901 1.21103 1.21584 1.21267 1.18953
0.90177 0.82094 1.43890 0.90466 1.45935 1.02322 0.99152 1.86046
1.22587 0.94319 0.86711 0.96338 1.22403 0.98021 0.95555 0.95141
1.22226 0.88117 0.88310 0.96540 1.21842 0.99648 0.93747 1.00615
1.21875 1.01761 0.99093 0.78975 1.48051 1.57089 1.21107 1.07008
1.19764 0.79131 0.83488 0.87311 1.90796 1.57876 1.78228 1.13483
1.22875 1.05166 0.96697 0.98686 1.21577 0.79027 0.90166 0.85921
1.93144 1.65391 1.81663 1.74737 1.93126 1.55073 1.90007 1.76663
1.22841 0.86795 0.87909 0.84370 1.93076 1.58274 1.90220 1.74497
1.93080 1.90259 1.69691 1.63284 1.21759 0.96288 0.83902 0.98799
1.21496 1.01029 0.96793 0.94148 0.93621 0.95181 0.94175 0.90975
0.95745 0.90452 0.91632 0.90437 0.90656 0.85135 0.84735 0.83875
0.89193 0.91150 0.92031 0.89304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.84 11.39 55.49 0.63 -26.21 16
2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16
3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16
4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16
8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
9 N -0.61 -14.82 3.53 -179.78 -0.64 -15.45 16
10 C 0.13 2.35 7.72 -3.15 -0.02 2.33 16
11 C -0.11 -1.82 0.77 -154.43 -0.12 -1.94 16
12 C 0.17 3.84 6.64 -3.17 -0.02 3.82 16
13 C -0.12 -1.46 5.26 -26.73 -0.14 -1.60 16
14 C 0.11 0.99 6.22 -3.66 -0.02 0.97 16
15 N -0.60 -7.15 2.94 -172.65 -0.51 -7.66 16
16 C 0.52 6.41 7.46 -10.99 -0.08 6.33 16
17 O -0.53 -8.78 14.22 5.55 0.08 -8.70 16
18 C -0.19 -1.47 3.51 -27.88 -0.10 -1.57 16
19 C 0.27 2.59 1.40 -26.73 -0.04 2.56 16
20 F -0.17 -2.25 16.10 2.25 0.04 -2.21 16
21 F -0.17 -1.93 16.12 2.25 0.04 -1.89 16
22 C 0.24 1.53 4.83 37.16 0.18 1.71 16
23 F -0.18 -1.34 16.80 2.25 0.04 -1.31 16
24 F -0.18 -1.67 17.30 2.25 0.04 -1.63 16
25 C 0.11 1.59 6.30 -3.65 -0.02 1.56 16
26 C -0.10 -1.57 5.21 -26.72 -0.14 -1.71 16
27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16
28 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16
29 H 0.04 0.72 7.41 -51.93 -0.38 0.34 16
30 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16
31 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16
32 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16
33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.08 0.45 5.89 -51.93 -0.31 0.15 16
35 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16
36 H 0.13 0.47 7.90 -51.93 -0.41 0.06 16
37 H 0.13 0.78 7.38 -51.93 -0.38 0.39 16
38 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16
39 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16
40 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16
41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16
LS Contribution 351.92 15.07 5.30 5.30
Total: -1.00 -34.60 351.92 -6.30 -40.90
By element:
Atomic # 1 Polarization: 1.60 SS G_CDS: -5.52 Total: -3.92 kcal
Atomic # 6 Polarization: 6.68 SS G_CDS: -0.79 Total: 5.90 kcal
Atomic # 7 Polarization: -48.81 SS G_CDS: -0.51 Total: -49.32 kcal
Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal
Atomic # 9 Polarization: -7.19 SS G_CDS: 0.15 Total: -7.04 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -34.60 -6.30 -40.90 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715315012.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -134.622 kcal
(2) G-P(sol) polarization free energy of solvation -34.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -175.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds