Wall clock time and date at job start Tue Mar 31 2020 20:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48506 * 109.47217 * 240.00021 * 3 2 1 5 5 H 1.48509 * 109.47281 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47466 * 119.99608 * 3 2 1 7 7 C 1.38808 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.47663 * 134.45859 * 179.97438 * 9 7 2 11 11 C 1.53506 * 85.98278 * 204.29890 * 10 9 7 12 12 C 1.47666 * 134.45728 * 359.97438 * 9 7 2 13 13 C 1.52672 * 113.57300 * 222.23837 * 11 10 9 14 14 C 1.53335 * 109.11873 * 286.15916 * 13 11 10 15 15 N 1.46879 * 108.76122 * 307.59182 * 14 13 11 16 16 C 1.34775 * 120.46877 * 235.56796 * 15 14 13 17 17 O 1.21287 * 119.99658 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00210 * 359.97438 * 16 15 14 19 19 C 1.53007 * 109.47315 * 179.97438 * 18 16 15 20 20 F 1.39899 * 109.46952 * 300.00415 * 19 18 16 21 21 F 1.39899 * 109.46850 * 59.99851 * 19 18 16 22 22 C 1.52999 * 109.47292 * 180.02562 * 19 18 16 23 23 F 1.39900 * 109.46957 * 59.99675 * 22 19 18 24 24 F 1.39891 * 109.47158 * 180.02562 * 22 19 18 25 25 C 1.46892 * 119.05991 * 55.54381 * 15 14 13 26 26 C 1.52671 * 113.56917 * 91.01150 * 11 10 9 27 27 H 0.96999 * 120.00072 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.78825 * 90.03297 * 10 9 7 29 29 H 1.09003 * 113.79694 * 318.56796 * 10 9 7 30 30 H 1.08997 * 113.79047 * 41.42836 * 12 9 7 31 31 H 1.09001 * 113.78628 * 269.96571 * 12 9 7 32 32 H 1.08995 * 109.52934 * 46.05163 * 13 11 10 33 33 H 1.08997 * 109.52609 * 166.26866 * 13 11 10 34 34 H 1.09003 * 109.59058 * 187.80205 * 14 13 11 35 35 H 1.09006 * 109.58522 * 67.37209 * 14 13 11 36 36 H 1.08998 * 109.47539 * 300.00087 * 18 16 15 37 37 H 1.09003 * 109.47249 * 60.00211 * 18 16 15 38 38 H 1.09005 * 109.47090 * 300.00213 * 22 19 18 39 39 H 1.09001 * 109.58900 * 184.66718 * 25 15 14 40 40 H 1.08996 * 109.58981 * 64.23402 * 25 15 14 41 41 H 1.08997 * 109.52648 * 193.72513 * 26 11 10 42 42 H 1.08998 * 109.53249 * 313.95079 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.7214 -3.8106 0.0005 11 6 0.3480 -4.0810 -0.6296 12 6 -0.1042 -2.7567 0.0005 13 6 -0.3580 -5.3057 -0.0528 14 6 0.3230 -6.5735 -0.5819 15 7 0.3914 -6.4966 -2.0471 16 6 -0.1321 -7.4781 -2.8081 17 8 -0.0712 -7.4056 -4.0173 18 6 -0.7928 -8.6655 -2.1567 19 6 -1.2987 -9.6239 -3.2369 20 9 -2.2252 -8.9626 -4.0502 21 9 -0.2213 -10.0590 -4.0160 22 6 -1.9702 -10.8291 -2.5755 23 9 -3.0477 -10.3935 -1.7968 24 9 -2.4322 -11.7056 -3.5631 25 6 1.0378 -5.3346 -2.6712 26 6 0.3615 -4.0584 -2.1561 27 1 -0.4850 0.8400 -0.0004 28 1 1.8386 -4.2344 0.9980 29 1 2.5596 -4.0340 -0.6594 30 1 -0.7167 -2.1424 -0.6594 31 1 -0.5298 -2.8671 0.9980 32 1 -0.2938 -5.2845 1.0351 33 1 -1.4045 -5.3000 -0.3573 34 1 -0.2562 -7.4491 -0.2885 35 1 1.3306 -6.6452 -0.1723 36 1 -0.0712 -9.1805 -1.5227 37 1 -1.6326 -8.3266 -1.5501 38 1 -1.2486 -11.3445 -1.9415 39 1 0.9296 -5.3940 -3.7542 40 1 2.0954 -5.3195 -2.4078 41 1 -0.6617 -4.0124 -2.5289 42 1 0.9165 -3.1867 -2.5027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715315012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:40 Heat of formation + Delta-G solvation = -198.109010 kcal Electronic energy + Delta-G solvation = -30613.438590 eV Core-core repulsion = 25708.047019 eV Total energy + Delta-G solvation = -4905.391571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.82231 -49.59029 -48.47270 -48.02762 -41.58155 -40.11922 -37.10726 -34.49889 -33.99839 -32.11396 -31.99123 -29.05274 -28.28416 -26.70620 -25.08372 -24.48647 -23.40646 -22.79892 -20.85930 -19.63519 -19.44882 -18.81928 -18.67986 -18.50904 -17.75720 -17.70875 -17.28561 -16.86596 -16.54201 -16.33971 -16.08471 -15.61768 -15.51069 -15.11821 -15.09610 -15.04206 -14.69902 -14.62949 -14.55077 -14.49550 -14.05169 -13.94270 -13.71644 -13.64877 -13.25500 -13.13323 -13.04602 -12.91220 -12.78974 -12.61533 -12.24241 -12.13663 -11.83546 -11.64587 -11.53304 -11.25335 -11.03841 -10.83015 -10.78934 -9.63195 -8.85728 -7.88362 -5.19843 1.43968 1.46657 1.49476 1.52664 1.55960 2.00025 2.48390 2.55281 2.83690 2.89880 3.04839 3.32493 3.44568 3.50716 3.63871 3.76529 3.81030 3.98236 3.99970 4.19009 4.28093 4.31785 4.35463 4.46280 4.64481 4.72679 4.78315 4.82334 4.91390 4.96054 5.07003 5.15983 5.24166 5.31108 5.37722 5.50997 5.61962 5.78818 5.98996 6.36727 6.95294 7.05128 7.64829 8.61848 9.28147 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.002415 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.094908 B =11590.002834 C =11823.367415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.641 5.641 10 C 0.131 3.869 11 C -0.083 4.083 12 C 0.166 3.834 13 C -0.116 4.116 14 C 0.106 3.894 15 N -0.599 5.599 16 C 0.509 3.491 17 O -0.580 6.580 18 C -0.186 4.186 19 C 0.251 3.749 20 F -0.201 7.201 21 F -0.184 7.184 22 C 0.242 3.758 23 F -0.184 7.184 24 F -0.202 7.202 25 C 0.125 3.875 26 C -0.090 4.090 27 H 0.246 0.754 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.206 0.794 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -26.564 1.276 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.367 5.367 10 C 0.007 3.993 11 C -0.084 4.084 12 C 0.041 3.959 13 C -0.154 4.154 14 C -0.015 4.015 15 N -0.331 5.331 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.225 4.225 19 C 0.214 3.786 20 F -0.182 7.182 21 F -0.165 7.165 22 C 0.188 3.812 23 F -0.165 7.165 24 F -0.183 7.183 25 C 0.002 3.998 26 C -0.128 4.128 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.202 0.798 37 H 0.179 0.821 38 H 0.222 0.778 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.866 -26.187 0.604 26.261 hybrid contribution 0.054 1.979 -0.434 2.026 sum -1.812 -24.209 0.170 24.277 Atomic orbital electron populations 1.70002 1.06363 1.25375 1.58614 1.25557 0.96471 1.00692 1.03489 0.85231 0.77180 0.79230 0.78190 1.20479 1.22317 1.20298 1.19361 0.90723 0.83679 1.42053 0.90126 1.46331 1.03624 1.00675 1.86109 1.22786 0.95537 0.83327 0.97692 1.22104 0.96665 0.95042 0.94605 1.22185 0.86869 0.91067 0.95789 1.21829 0.99495 0.92662 1.01441 1.22152 1.03398 0.99194 0.76754 1.48117 1.56589 1.20149 1.08278 1.20626 0.78268 0.84471 0.86826 1.90783 1.59702 1.79465 1.16066 1.23031 1.06857 0.94378 0.98217 1.22311 0.78575 0.91941 0.85821 1.93076 1.66550 1.82591 1.75964 1.93087 1.55836 1.90239 1.77356 1.23304 0.87278 0.86485 0.84167 1.93068 1.58861 1.90308 1.74302 1.93041 1.90586 1.70116 1.64534 1.21434 0.96610 0.83680 0.98041 1.21347 1.00124 0.96990 0.94360 0.94529 0.92794 0.93295 0.95257 0.96407 0.88830 0.91328 0.85263 0.88934 0.79758 0.82111 0.77778 0.90826 0.90217 0.93053 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 11.39 21.65 0.25 -57.74 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.23 -12.74 10.70 84.03 0.90 -11.84 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.64 -31.62 3.53 -722.69 -2.55 -34.17 16 10 C 0.13 4.65 7.72 86.32 0.67 5.32 16 11 C -0.08 -2.68 0.77 -52.04 -0.04 -2.72 16 12 C 0.17 7.57 6.64 86.31 0.57 8.14 16 13 C -0.12 -2.39 5.26 30.60 0.16 -2.23 16 14 C 0.11 1.40 6.22 86.42 0.54 1.94 16 15 N -0.60 -12.42 2.94 -818.54 -2.41 -14.83 16 16 C 0.51 11.26 7.46 87.66 0.65 11.92 16 17 O -0.58 -19.12 14.22 -3.05 -0.04 -19.16 16 18 C -0.19 -1.91 3.51 29.85 0.10 -1.80 16 19 C 0.25 4.11 1.40 30.60 0.04 4.15 16 20 F -0.20 -5.24 16.10 44.97 0.72 -4.52 16 21 F -0.18 -3.91 16.12 44.97 0.73 -3.19 16 22 C 0.24 2.20 4.83 71.98 0.35 2.55 16 23 F -0.18 -2.05 16.80 44.97 0.76 -1.29 16 24 F -0.20 -3.27 17.30 44.97 0.78 -2.49 16 25 C 0.13 3.39 6.30 86.42 0.54 3.93 16 26 C -0.09 -2.99 5.21 30.60 0.16 -2.83 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.05 1.66 7.41 -2.39 -0.02 1.64 16 30 H 0.03 1.56 7.12 -2.39 -0.02 1.54 16 31 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.13 0.48 5.89 -2.39 -0.01 0.47 16 35 H 0.09 1.03 8.08 -2.38 -0.02 1.01 16 36 H 0.19 -0.11 7.90 -2.39 -0.02 -0.13 16 37 H 0.16 0.88 7.38 -2.39 -0.02 0.86 16 38 H 0.21 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.07 2.26 6.98 -2.39 -0.02 2.24 16 40 H 0.08 2.01 7.50 -2.39 -0.02 1.99 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 2.07 8.01 -2.39 -0.02 2.05 16 Total: -1.00 -83.58 351.92 6.42 -77.16 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.05 Total: -0.86 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 5.12 Total: 13.01 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.71 Total: -106.74 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.04 Total: -19.16 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 2.98 Total: -11.49 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -83.58 6.42 -77.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715315012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.948 kcal (2) G-P(sol) polarization free energy of solvation -83.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds