Wall clock time and date at job start Tue Mar 31 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35245 * 126.69424 * 2 1 4 4 C 1.42047 * 103.95564 * 180.12927 * 3 2 1 5 5 N 1.39361 * 126.89842 * 179.85321 * 4 3 2 6 6 C 1.34776 * 119.99611 * 359.71175 * 5 4 3 7 7 O 1.21355 * 120.00346 * 0.02562 * 6 5 4 8 8 C 1.49386 * 119.99723 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99741 * 0.02562 * 8 6 5 10 10 N 1.34771 * 119.99892 * 180.02562 * 8 6 5 11 11 C 1.46498 * 120.00066 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47379 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.67918 * 59.76581 * 12 11 10 14 14 C 1.53294 * 109.71593 * 180.29850 * 12 11 10 15 15 O 1.42959 * 109.22775 * 172.04387 * 14 12 11 16 16 C 1.42963 * 114.16563 * 297.42333 * 15 14 12 17 17 C 1.53298 * 109.22119 * 62.57653 * 16 15 14 18 18 N 1.47146 * 108.38783 * 307.69678 * 17 16 15 19 19 C 1.36936 * 120.98541 * 230.51825 * 18 17 16 20 20 H 1.08000 * 120.00188 * 149.43378 * 19 18 17 21 21 C 1.38819 * 119.99992 * 329.42760 * 19 18 17 22 22 N 1.31612 * 120.00368 * 163.31666 * 21 19 18 23 23 Si 1.86802 * 119.99743 * 343.32184 * 21 19 18 24 24 H 1.48502 * 109.47352 * 88.95169 * 23 21 19 25 25 H 1.48500 * 109.46926 * 208.95031 * 23 21 19 26 26 H 1.48500 * 109.47163 * 328.94961 * 23 21 19 27 27 N 1.30754 * 106.20409 * 359.59967 * 4 3 2 28 28 O 1.20906 * 111.47026 * 0.25579 * 27 4 3 29 29 H 1.09003 * 109.47607 * 180.35156 * 1 2 3 30 30 H 1.09000 * 109.47005 * 300.34863 * 1 2 3 31 31 H 1.09001 * 109.47682 * 60.34976 * 1 2 3 32 32 H 1.08001 * 128.01831 * 359.97438 * 3 2 1 33 33 H 0.97002 * 120.00117 * 179.71413 * 5 4 3 34 34 H 0.96999 * 120.00339 * 359.97438 * 10 8 6 35 35 H 1.08994 * 109.47490 * 59.99213 * 11 10 8 36 36 H 1.09002 * 109.46653 * 299.99153 * 11 10 8 37 37 H 1.09005 * 109.51184 * 291.97169 * 14 12 11 38 38 H 1.09004 * 109.51143 * 52.11780 * 14 12 11 39 39 H 1.09003 * 109.51145 * 302.65617 * 16 15 14 40 40 H 1.08992 * 109.55500 * 182.52704 * 16 15 14 41 41 H 1.09006 * 109.67688 * 187.97425 * 17 16 15 42 42 H 1.08996 * 109.71298 * 67.44513 * 17 16 15 43 43 H 0.96996 * 120.00527 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6251 0.5354 -0.0031 5 7 4.8276 1.2398 -0.0072 6 6 4.8189 2.5875 -0.0144 7 8 3.7641 3.1876 -0.0169 8 6 6.1079 3.3427 -0.0182 9 8 7.1626 2.7426 -0.0153 10 7 6.0993 4.6904 -0.0249 11 6 7.3633 5.4309 -0.0292 12 6 7.0741 6.9333 -0.0372 13 1 6.4975 7.2009 0.8483 14 6 8.3935 7.7138 -0.0492 15 8 8.1170 9.1029 -0.2434 16 6 7.4911 9.4061 -1.4925 17 6 6.1256 8.7123 -1.5543 18 7 6.3154 7.2856 -1.2478 19 6 5.8010 6.3145 -2.0647 20 1 6.3039 5.3631 -2.1556 21 6 4.6330 6.5529 -2.7761 22 7 4.3121 5.7806 -3.7923 23 14 3.5169 7.9702 -2.2911 24 1 3.9377 9.1999 -3.0095 25 1 2.1144 7.6416 -2.6519 26 1 3.6113 8.1958 -0.8264 27 7 3.4763 -0.7636 0.0042 28 8 2.3081 -1.0753 0.0060 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5192 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 2.0303 2.1262 -0.0004 33 1 5.6707 0.7602 -0.0049 34 1 5.2562 5.1700 -0.0276 35 1 7.9362 5.1668 -0.9180 36 1 7.9368 5.1758 0.8619 37 1 8.9077 7.5744 0.9018 38 1 9.0237 7.3510 -0.8612 39 1 8.1180 9.0494 -2.3098 40 1 7.3562 10.4840 -1.5808 41 1 5.7040 8.8201 -2.5537 42 1 5.4529 9.1587 -0.8220 43 1 3.4962 5.9474 -4.2896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717143029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:58 Heat of formation + Delta-G solvation = -1.158698 kcal Electronic energy + Delta-G solvation = -30071.384123 eV Core-core repulsion = 25736.309660 eV Total energy + Delta-G solvation = -4335.074463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.89282 -40.61333 -39.11664 -38.26783 -35.98227 -35.44650 -33.84236 -33.65437 -31.98728 -31.83120 -31.12555 -27.91272 -27.70734 -26.58917 -24.70968 -23.52918 -23.17927 -22.20521 -21.04624 -20.23160 -19.96040 -18.25480 -17.71829 -17.47384 -16.83421 -16.73151 -16.21196 -16.02891 -15.73941 -15.53863 -14.97962 -14.94923 -14.53850 -14.08190 -13.89767 -13.78437 -13.67482 -13.59061 -13.40608 -13.20637 -12.62796 -12.57741 -12.29324 -11.96736 -11.77068 -11.67419 -11.40596 -11.28651 -11.22816 -10.86270 -10.62260 -10.40156 -9.89164 -9.68826 -9.59653 -9.43856 -9.34243 -8.89305 -8.81836 -8.58292 -7.10259 -6.10683 -3.55267 1.20121 1.60721 2.16251 2.41558 3.07659 3.19568 3.38041 3.39208 3.46535 3.64263 4.19984 4.28678 4.37165 4.54282 4.69822 4.84690 5.02132 5.14950 5.15129 5.24354 5.28590 5.42981 5.43292 5.54769 5.69070 5.70855 5.78170 5.83804 5.85831 5.91334 5.98531 6.11938 6.27953 6.32736 6.42247 6.58475 6.65629 6.87437 7.50799 7.56445 7.73014 7.88054 8.15199 8.26473 8.30601 8.69614 9.51294 9.87317 11.03155 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003401 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.266611 B = 8231.271771 C = 9530.882957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.224 4.224 4 C 0.252 3.748 5 N -0.612 5.612 6 C 0.521 3.479 7 O -0.480 6.480 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.652 5.652 11 C 0.133 3.867 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.055 3.945 15 O -0.387 6.387 16 C 0.046 3.954 17 C 0.091 3.909 18 N -0.607 5.607 19 C -0.278 4.278 20 H 0.094 0.906 21 C 0.036 3.964 22 N -0.897 5.897 23 Si 0.885 3.115 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.270 1.270 27 N -0.390 5.390 28 O 0.096 5.904 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.192 0.808 33 H 0.429 0.571 34 H 0.425 0.575 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -5.022 8.854 10.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.247 4.247 4 C 0.003 3.997 5 N -0.265 5.265 6 C 0.302 3.698 7 O -0.349 6.349 8 C 0.291 3.709 9 O -0.417 6.417 10 N -0.304 5.304 11 C 0.009 3.991 12 C 0.020 3.980 13 H 0.067 0.933 14 C -0.024 4.024 15 O -0.305 6.305 16 C -0.032 4.032 17 C -0.034 4.034 18 N -0.334 5.334 19 C -0.405 4.405 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.195 1.195 27 N -0.106 5.106 28 O 0.035 5.965 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.209 0.791 33 H 0.268 0.732 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.540 -5.862 8.851 10.727 hybrid contribution -1.063 1.362 -0.313 1.756 sum -2.604 -4.500 8.538 9.996 Atomic orbital electron populations 1.20337 0.83726 1.04474 1.04411 1.24412 0.96465 0.85771 1.02405 1.22773 0.89221 1.02393 1.10299 1.20466 0.88278 0.88862 1.02080 1.42115 1.06835 1.06066 1.71496 1.20509 0.91071 0.81475 0.76742 1.90737 1.32239 1.67861 1.44110 1.19309 0.87864 0.83945 0.79742 1.90737 1.31590 1.68681 1.50686 1.45790 1.12136 1.04299 1.68213 1.21358 0.85193 0.90381 1.02126 1.21472 0.93515 0.91966 0.91070 0.93328 1.22892 0.96032 0.82246 1.01210 1.87834 1.80334 1.24051 1.38321 1.23075 0.94968 0.99338 0.85839 1.22067 0.95374 0.85374 1.00633 1.44409 1.63954 1.01133 1.23896 1.18920 1.04727 0.96895 1.19990 0.88869 1.25330 0.96962 0.97230 0.97021 1.69776 1.25596 1.39858 1.18526 0.86966 0.80200 0.82014 0.79299 1.21486 1.22994 1.19476 1.74040 0.97567 1.13005 1.25980 1.84785 1.10408 1.32378 1.68889 0.89920 0.89079 0.88941 0.79074 0.73231 0.73452 0.90211 0.91076 0.89246 0.92802 0.92950 0.89682 0.89957 0.94703 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.44 36.00 0.38 -0.14 16 2 C -0.03 -0.32 7.48 -35.38 -0.26 -0.58 16 3 C -0.22 -3.30 9.79 -39.19 -0.38 -3.68 16 4 C 0.25 4.02 8.17 -154.92 -1.27 2.75 16 5 N -0.61 -9.66 5.41 -11.86 -0.06 -9.72 16 6 C 0.52 9.20 7.85 -11.62 -0.09 9.11 16 7 O -0.48 -9.28 13.75 5.49 0.08 -9.20 16 8 C 0.51 9.30 7.89 -11.62 -0.09 9.21 16 9 O -0.54 -10.14 16.48 5.50 0.09 -10.05 16 10 N -0.65 -11.91 3.76 -60.76 -0.23 -12.13 16 11 C 0.13 2.21 4.45 -4.04 -0.02 2.19 16 12 C 0.13 2.19 3.21 -67.42 -0.22 1.98 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.06 0.84 6.29 37.31 0.23 1.08 16 15 O -0.39 -6.58 10.74 -35.23 -0.38 -6.96 16 16 C 0.05 0.78 6.99 37.31 0.26 1.04 16 17 C 0.09 1.82 4.38 -3.54 -0.02 1.81 16 18 N -0.61 -12.87 2.78 -164.30 -0.46 -13.32 16 19 C -0.28 -6.87 7.54 -15.06 -0.11 -6.99 16 20 H 0.09 2.49 5.98 -52.49 -0.31 2.18 16 21 C 0.04 0.96 5.29 -17.43 -0.09 0.86 16 22 N -0.90 -25.89 13.97 55.49 0.78 -25.11 16 23 Si 0.88 21.06 24.28 -169.99 -4.13 16.94 16 24 H -0.29 -6.60 6.54 56.52 0.37 -6.23 16 25 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.27 -6.30 6.64 56.52 0.38 -5.92 16 27 N -0.39 -5.99 12.10 31.18 0.38 -5.62 16 28 O 0.10 1.30 11.19 17.03 0.19 1.49 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.19 2.96 6.22 -52.49 -0.33 2.63 16 33 H 0.43 6.07 8.29 -40.82 -0.34 5.73 16 34 H 0.43 8.40 6.80 -40.82 -0.28 8.13 16 35 H 0.08 1.46 7.56 -51.93 -0.39 1.06 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.79 4.89 -51.93 -0.25 1.53 16 42 H 0.04 0.71 6.81 -51.93 -0.35 0.36 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -31.31 352.64 -5.37 -36.68 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.25 Total: 13.07 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: -1.68 Total: 18.63 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: 0.40 Total: -65.91 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.02 Total: -24.73 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.13 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.31 -5.37 -36.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717143029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.519 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds