Wall clock time and date at job start Tue Mar 31 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35245 * 126.69424 * 2 1 4 4 C 1.42047 * 103.95564 * 180.12927 * 3 2 1 5 5 N 1.39361 * 126.89842 * 179.85321 * 4 3 2 6 6 C 1.34776 * 119.99611 * 359.71175 * 5 4 3 7 7 O 1.21355 * 120.00346 * 0.02562 * 6 5 4 8 8 C 1.49386 * 119.99723 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99741 * 0.02562 * 8 6 5 10 10 N 1.34771 * 119.99892 * 180.02562 * 8 6 5 11 11 C 1.46498 * 120.00066 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47379 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.67918 * 59.76581 * 12 11 10 14 14 C 1.53294 * 109.71593 * 180.29850 * 12 11 10 15 15 O 1.42959 * 109.22775 * 172.04387 * 14 12 11 16 16 C 1.42963 * 114.16563 * 297.42333 * 15 14 12 17 17 C 1.53298 * 109.22119 * 62.57653 * 16 15 14 18 18 N 1.47146 * 108.38783 * 307.69678 * 17 16 15 19 19 C 1.36936 * 120.98541 * 230.51825 * 18 17 16 20 20 H 1.08000 * 120.00188 * 149.43378 * 19 18 17 21 21 C 1.38819 * 119.99992 * 329.42760 * 19 18 17 22 22 N 1.31612 * 120.00368 * 163.31666 * 21 19 18 23 23 Si 1.86802 * 119.99743 * 343.32184 * 21 19 18 24 24 H 1.48502 * 109.47352 * 88.95169 * 23 21 19 25 25 H 1.48500 * 109.46926 * 208.95031 * 23 21 19 26 26 H 1.48500 * 109.47163 * 328.94961 * 23 21 19 27 27 N 1.30754 * 106.20409 * 359.59967 * 4 3 2 28 28 O 1.20906 * 111.47026 * 0.25579 * 27 4 3 29 29 H 1.09003 * 109.47607 * 180.35156 * 1 2 3 30 30 H 1.09000 * 109.47005 * 300.34863 * 1 2 3 31 31 H 1.09001 * 109.47682 * 60.34976 * 1 2 3 32 32 H 1.08001 * 128.01831 * 359.97438 * 3 2 1 33 33 H 0.97002 * 120.00117 * 179.71413 * 5 4 3 34 34 H 0.96999 * 120.00339 * 359.97438 * 10 8 6 35 35 H 1.08994 * 109.47490 * 59.99213 * 11 10 8 36 36 H 1.09002 * 109.46653 * 299.99153 * 11 10 8 37 37 H 1.09005 * 109.51184 * 291.97169 * 14 12 11 38 38 H 1.09004 * 109.51143 * 52.11780 * 14 12 11 39 39 H 1.09003 * 109.51145 * 302.65617 * 16 15 14 40 40 H 1.08992 * 109.55500 * 182.52704 * 16 15 14 41 41 H 1.09006 * 109.67688 * 187.97425 * 17 16 15 42 42 H 1.08996 * 109.71298 * 67.44513 * 17 16 15 43 43 H 0.96996 * 120.00527 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6251 0.5354 -0.0031 5 7 4.8276 1.2398 -0.0072 6 6 4.8189 2.5875 -0.0144 7 8 3.7641 3.1876 -0.0169 8 6 6.1079 3.3427 -0.0182 9 8 7.1626 2.7426 -0.0153 10 7 6.0993 4.6904 -0.0249 11 6 7.3633 5.4309 -0.0292 12 6 7.0741 6.9333 -0.0372 13 1 6.4975 7.2009 0.8483 14 6 8.3935 7.7138 -0.0492 15 8 8.1170 9.1029 -0.2434 16 6 7.4911 9.4061 -1.4925 17 6 6.1256 8.7123 -1.5543 18 7 6.3154 7.2856 -1.2478 19 6 5.8010 6.3145 -2.0647 20 1 6.3039 5.3631 -2.1556 21 6 4.6330 6.5529 -2.7761 22 7 4.3121 5.7806 -3.7923 23 14 3.5169 7.9702 -2.2911 24 1 3.9377 9.1999 -3.0095 25 1 2.1144 7.6416 -2.6519 26 1 3.6113 8.1958 -0.8264 27 7 3.4763 -0.7636 0.0042 28 8 2.3081 -1.0753 0.0060 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5192 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 2.0303 2.1262 -0.0004 33 1 5.6707 0.7602 -0.0049 34 1 5.2562 5.1700 -0.0276 35 1 7.9362 5.1668 -0.9180 36 1 7.9368 5.1758 0.8619 37 1 8.9077 7.5744 0.9018 38 1 9.0237 7.3510 -0.8612 39 1 8.1180 9.0494 -2.3098 40 1 7.3562 10.4840 -1.5808 41 1 5.7040 8.8201 -2.5537 42 1 5.4529 9.1587 -0.8220 43 1 3.4962 5.9474 -4.2896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717143029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:57 Heat of formation + Delta-G solvation = -25.315509 kcal Electronic energy + Delta-G solvation = -30072.431641 eV Core-core repulsion = 25736.309660 eV Total energy + Delta-G solvation = -4336.121981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.03699 -42.03518 -40.54823 -39.70090 -37.37995 -36.85175 -35.43890 -34.62748 -33.64534 -33.16868 -32.63588 -29.33245 -28.73794 -28.01220 -26.05078 -25.22633 -24.45396 -23.59960 -22.24207 -21.69227 -21.44879 -19.72107 -18.86333 -18.66528 -18.54225 -17.97097 -17.76078 -17.37585 -17.16839 -16.96881 -16.54919 -16.34940 -16.02646 -15.61467 -15.34994 -15.21297 -14.91563 -14.68227 -14.44946 -14.41899 -14.01332 -13.90663 -13.49464 -13.41724 -13.21629 -13.03485 -12.87600 -12.79443 -12.36487 -12.33068 -12.32198 -12.05117 -11.58289 -11.35884 -11.10660 -10.90670 -10.51799 -10.48981 -10.17846 -10.07697 -8.87391 -8.15107 -5.53982 -0.11818 0.48062 0.83291 1.16824 1.28895 1.42520 1.48506 2.02771 2.09735 2.31598 2.40907 2.85398 3.03576 3.17238 3.21723 3.31185 3.73230 3.86587 3.98707 4.09560 4.21782 4.28165 4.29356 4.39681 4.48197 4.54417 4.61588 4.67835 4.73140 4.73501 4.82128 4.91660 4.95150 5.05446 5.14697 5.22999 5.24036 5.58905 5.83497 6.13560 6.16566 6.23538 6.44177 6.80209 6.82896 7.15480 7.56456 7.97325 9.02583 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003401 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.266611 B = 8231.271771 C = 9530.882957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.001 3.999 3 C -0.256 4.256 4 C 0.229 3.771 5 N -0.602 5.602 6 C 0.521 3.479 7 O -0.501 6.501 8 C 0.514 3.486 9 O -0.546 6.546 10 N -0.656 5.656 11 C 0.134 3.866 12 C 0.124 3.876 13 H 0.059 0.941 14 C 0.058 3.942 15 O -0.389 6.389 16 C 0.054 3.946 17 C 0.084 3.916 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.068 0.932 21 C -0.021 4.021 22 N -0.949 5.949 23 Si 0.937 3.063 24 H -0.275 1.275 25 H -0.320 1.320 26 H -0.261 1.261 27 N -0.402 5.402 28 O 0.102 5.898 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.181 0.819 33 H 0.435 0.565 34 H 0.418 0.582 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 -4.374 10.615 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.279 4.279 4 C -0.019 4.019 5 N -0.256 5.256 6 C 0.302 3.698 7 O -0.373 6.373 8 C 0.293 3.707 9 O -0.425 6.425 10 N -0.307 5.307 11 C 0.011 3.989 12 C 0.019 3.981 13 H 0.076 0.924 14 C -0.021 4.021 15 O -0.308 6.308 16 C -0.024 4.024 17 C -0.041 4.041 18 N -0.348 5.348 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.217 4.217 22 N -0.594 5.594 23 Si 0.767 3.233 24 H -0.201 1.201 25 H -0.249 1.249 26 H -0.186 1.186 27 N -0.117 5.117 28 O 0.041 5.959 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.198 0.802 33 H 0.275 0.725 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.321 -5.198 10.656 11.929 hybrid contribution -1.079 1.066 -0.799 1.714 sum -2.400 -4.132 9.856 10.954 Atomic orbital electron populations 1.20650 0.79927 1.06605 1.05761 1.25151 0.98102 0.84172 0.98837 1.22779 0.89453 1.02799 1.12885 1.20711 0.88573 0.89375 1.03207 1.41966 1.07409 1.05515 1.70683 1.20432 0.90621 0.82006 0.76719 1.90729 1.32725 1.68399 1.45441 1.19359 0.87920 0.83969 0.79433 1.90723 1.31839 1.68779 1.51187 1.45844 1.12340 1.04430 1.68087 1.21472 0.84581 0.89947 1.02866 1.21709 0.94294 0.92617 0.89488 0.92351 1.23018 0.94642 0.81093 1.03303 1.87848 1.80008 1.24821 1.38093 1.23012 0.92674 1.00695 0.85986 1.22122 0.97537 0.84899 0.99537 1.44569 1.64063 1.01153 1.25063 1.18765 1.03332 0.96454 1.18427 0.91398 1.25846 0.98656 0.99604 0.97560 1.69907 1.26215 1.42643 1.20675 0.86108 0.77608 0.80200 0.79365 1.20140 1.24933 1.18562 1.74034 0.98613 1.12648 1.26405 1.84759 1.10091 1.32780 1.68300 0.87428 0.87146 0.87847 0.80169 0.72546 0.74377 0.92064 0.87625 0.85375 0.92899 0.93165 0.86728 0.91895 0.94493 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.44 71.23 0.74 -0.09 16 2 C 0.00 0.03 7.48 24.99 0.19 0.22 16 3 C -0.26 -7.62 9.79 22.52 0.22 -7.40 16 4 C 0.23 7.42 8.17 134.15 1.10 8.52 16 5 N -0.60 -19.53 5.41 -310.81 -1.68 -21.21 16 6 C 0.52 18.96 7.85 87.25 0.68 19.65 16 7 O -0.50 -20.13 13.75 -3.26 -0.04 -20.17 16 8 C 0.51 18.87 7.89 87.25 0.69 19.56 16 9 O -0.55 -20.54 16.48 -3.25 -0.05 -20.59 16 10 N -0.66 -23.96 3.76 -464.50 -1.75 -25.70 16 11 C 0.13 4.28 4.45 86.38 0.38 4.67 16 12 C 0.12 4.04 3.21 44.97 0.14 4.19 16 13 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 14 C 0.06 1.57 6.29 72.08 0.45 2.02 16 15 O -0.39 -11.84 10.74 -148.98 -1.60 -13.44 16 16 C 0.05 1.68 6.99 72.08 0.50 2.19 16 17 C 0.08 3.22 4.38 86.36 0.38 3.60 16 18 N -0.62 -25.69 2.78 -673.73 -1.87 -27.56 16 19 C -0.24 -12.05 7.54 84.04 0.63 -11.42 16 20 H 0.07 3.74 5.98 -2.91 -0.02 3.72 16 21 C -0.02 -1.12 5.29 84.86 0.45 -0.67 16 22 N -0.95 -56.96 13.97 21.65 0.30 -56.66 16 23 Si 0.94 44.14 24.28 68.60 1.67 45.80 16 24 H -0.27 -12.20 6.54 99.48 0.65 -11.55 16 25 H -0.32 -15.88 7.11 99.48 0.71 -15.18 16 26 H -0.26 -11.73 6.64 99.48 0.66 -11.07 16 27 N -0.40 -12.28 12.10 -56.34 -0.68 -12.96 16 28 O 0.10 2.64 11.19 71.11 0.80 3.44 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.18 5.79 6.22 -2.91 -0.02 5.77 16 33 H 0.43 12.61 8.29 -92.71 -0.77 11.84 16 34 H 0.42 16.68 6.80 -92.71 -0.63 16.05 16 35 H 0.06 2.20 7.56 -2.39 -0.02 2.19 16 36 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 41 H 0.06 2.67 4.89 -2.38 -0.01 2.65 16 42 H 0.04 1.42 6.81 -2.39 -0.02 1.40 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.54 352.64 1.24 -68.30 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.41 Total: 35.73 kcal Atomic # 6 Polarization: 38.47 SS G_CDS: 6.57 Total: 45.03 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -5.68 Total: -144.10 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.90 Total: -50.76 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.80 kcal Total: -69.54 1.24 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717143029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.983 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds