Wall clock time and date at job start Tue Mar 31 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35235 * 126.69723 * 2 1 4 4 C 1.42049 * 103.95772 * 179.97438 * 3 2 1 5 5 N 1.39362 * 126.89859 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00035 * 359.97438 * 5 4 3 7 7 O 1.21358 * 119.99435 * 0.02562 * 6 5 4 8 8 C 1.49377 * 119.99993 * 179.97438 * 6 5 4 9 9 O 1.21358 * 119.99912 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00026 * 179.97438 * 8 6 5 11 11 C 1.46500 * 120.00210 * 180.02562 * 10 8 6 12 12 C 1.52993 * 109.47344 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.68075 * 299.56440 * 12 11 10 14 14 C 1.53296 * 109.68444 * 179.04437 * 12 11 10 15 15 O 1.42961 * 109.22373 * 187.93747 * 14 12 11 16 16 C 1.42964 * 114.16541 * 62.58042 * 15 14 12 17 17 C 1.53288 * 109.22372 * 297.41685 * 16 15 14 18 18 N 1.47150 * 108.38421 * 52.30431 * 17 16 15 19 19 C 1.36944 * 120.98082 * 129.48537 * 18 17 16 20 20 H 1.08005 * 119.99482 * 221.30387 * 19 18 17 21 21 C 1.38807 * 119.99877 * 41.30697 * 19 18 17 22 22 N 1.31627 * 119.99512 * 199.64803 * 21 19 18 23 23 Si 1.86796 * 120.00396 * 19.64283 * 21 19 18 24 24 H 1.48501 * 109.47053 * 96.45546 * 23 21 19 25 25 H 1.48505 * 109.47198 * 216.45481 * 23 21 19 26 26 H 1.48501 * 109.47219 * 336.45902 * 23 21 19 27 27 N 1.30749 * 106.20245 * 0.24126 * 4 3 2 28 28 O 1.20909 * 111.46991 * 359.57220 * 27 4 3 29 29 H 1.08996 * 109.46857 * 89.99678 * 1 2 3 30 30 H 1.08990 * 109.47474 * 210.00183 * 1 2 3 31 31 H 1.09007 * 109.46625 * 330.00563 * 1 2 3 32 32 H 1.07998 * 128.01991 * 359.95966 * 3 2 1 33 33 H 0.97002 * 120.00241 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99691 * 0.02562 * 10 8 6 35 35 H 1.08999 * 109.47048 * 60.00277 * 11 10 8 36 36 H 1.09006 * 109.46947 * 300.00568 * 11 10 8 37 37 H 1.09003 * 109.51299 * 307.85938 * 14 12 11 38 38 H 1.08996 * 109.50897 * 67.96022 * 14 12 11 39 39 H 1.09001 * 109.51225 * 57.34571 * 16 15 14 40 40 H 1.09006 * 109.50628 * 177.49505 * 16 15 14 41 41 H 1.09004 * 109.68505 * 172.02941 * 17 16 15 42 42 H 1.09004 * 109.68746 * 292.54273 * 17 16 15 43 43 H 0.97006 * 119.99750 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0843 0.0000 4 6 3.6252 0.5352 0.0006 5 7 4.8277 1.2397 0.0004 6 6 4.8192 2.5875 -0.0011 7 8 3.7643 3.1875 -0.0017 8 6 6.1081 3.3425 -0.0008 9 8 7.1629 2.7423 0.0003 10 7 6.0996 4.6902 -0.0027 11 6 7.3637 5.4307 -0.0030 12 6 7.0746 6.9331 -0.0047 13 1 6.5084 7.1970 -0.8980 14 6 8.3943 7.7128 0.0191 15 8 8.1163 9.1030 0.2037 16 6 7.4763 9.4121 1.4442 17 6 6.1097 8.7195 1.4933 18 7 6.3022 7.2914 1.1955 19 6 5.7777 6.3243 2.0109 20 1 6.3588 5.4457 2.2495 21 6 4.4992 6.4732 2.5306 22 7 4.1344 5.7811 3.5891 23 14 3.2965 7.6557 1.7279 24 1 2.4140 6.9080 0.7965 25 1 2.4707 8.3087 2.7753 26 1 4.0485 8.6906 0.9737 27 7 3.4764 -0.7637 -0.0044 28 8 2.3081 -1.0753 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.0305 2.1261 -0.0006 33 1 5.6708 0.7600 0.0005 34 1 5.2565 5.1699 -0.0040 35 1 7.9374 5.1698 -0.8923 36 1 7.9364 5.1722 0.8877 37 1 9.0148 7.3535 0.8400 38 1 8.9197 7.5680 -0.9249 39 1 8.0935 9.0589 2.2703 40 1 7.3410 10.4907 1.5250 41 1 5.6766 8.8321 2.4873 42 1 5.4460 9.1636 0.7514 43 1 3.2411 5.8854 3.9525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717143030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:02 Heat of formation + Delta-G solvation = 1.686813 kcal Electronic energy + Delta-G solvation = -30155.549802 eV Core-core repulsion = 25820.598730 eV Total energy + Delta-G solvation = -4334.951072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.88356 -40.57908 -39.06404 -38.22738 -35.94996 -35.40874 -33.76953 -33.63998 -31.97406 -31.83721 -31.09996 -27.90401 -27.68063 -26.55402 -24.67882 -23.44084 -23.17023 -22.16247 -21.02624 -20.21989 -19.95759 -18.21470 -17.71081 -17.46035 -16.78965 -16.71913 -16.12101 -16.00886 -15.73848 -15.50034 -14.99054 -14.85804 -14.44386 -14.11050 -13.89414 -13.75296 -13.64639 -13.58602 -13.39566 -13.11628 -12.65114 -12.56623 -12.27633 -11.96735 -11.76122 -11.65524 -11.37153 -11.26815 -11.05271 -10.89181 -10.78056 -10.25139 -9.98685 -9.57257 -9.43843 -9.42825 -9.26357 -8.87725 -8.75133 -8.48609 -6.90753 -6.15196 -3.66568 1.21752 1.62346 2.18611 2.43108 3.08308 3.26874 3.37474 3.42756 3.49307 3.67599 4.23824 4.30609 4.40226 4.60273 4.73907 4.84939 5.02985 5.14416 5.16210 5.23038 5.31745 5.46188 5.47497 5.58213 5.69790 5.76692 5.82009 5.89990 5.91418 5.93022 6.01797 6.17818 6.34012 6.37103 6.52074 6.66611 6.72734 6.89558 7.54683 7.60055 7.83544 7.91806 8.19363 8.27407 8.34394 8.72434 9.49951 9.92431 10.98033 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003464 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.903745 B = 8080.867950 C = 9340.514451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.224 4.224 4 C 0.252 3.748 5 N -0.612 5.612 6 C 0.520 3.480 7 O -0.480 6.480 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.648 5.648 11 C 0.135 3.865 12 C 0.122 3.878 13 H 0.048 0.952 14 C 0.056 3.944 15 O -0.388 6.388 16 C 0.042 3.958 17 C 0.102 3.898 18 N -0.604 5.604 19 C -0.282 4.282 20 H 0.081 0.919 21 C 0.050 3.950 22 N -0.888 5.888 23 Si 0.836 3.164 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.234 1.234 27 N -0.390 5.390 28 O 0.096 5.904 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.192 0.808 33 H 0.429 0.571 34 H 0.424 0.576 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -4.707 -8.454 9.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.246 4.246 4 C 0.003 3.997 5 N -0.265 5.265 6 C 0.301 3.699 7 O -0.349 6.349 8 C 0.290 3.710 9 O -0.419 6.419 10 N -0.300 5.300 11 C 0.011 3.989 12 C 0.016 3.984 13 H 0.065 0.935 14 C -0.023 4.023 15 O -0.306 6.306 16 C -0.036 4.036 17 C -0.023 4.023 18 N -0.331 5.331 19 C -0.410 4.410 20 H 0.099 0.901 21 C -0.153 4.153 22 N -0.528 5.528 23 Si 0.664 3.336 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.159 1.159 27 N -0.106 5.106 28 O 0.035 5.965 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.209 0.791 33 H 0.268 0.732 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.358 -5.537 -8.444 10.188 hybrid contribution -1.191 1.077 0.195 1.618 sum -2.549 -4.460 -8.249 9.717 Atomic orbital electron populations 1.20335 0.83728 1.04785 1.04073 1.24408 0.96462 0.85775 1.02455 1.22789 0.89247 1.02362 1.10228 1.20467 0.88300 0.88868 1.02038 1.42125 1.06802 1.06074 1.71545 1.20547 0.91130 0.81459 0.76740 1.90745 1.32257 1.67851 1.44058 1.19302 0.87809 0.83990 0.79856 1.90733 1.31568 1.68700 1.50908 1.45770 1.12102 1.04201 1.67946 1.21324 0.85158 0.90438 1.01938 1.21552 0.93465 0.91885 0.91523 0.93472 1.22867 0.96048 0.82251 1.01111 1.87828 1.79755 1.23954 1.39106 1.23167 0.95276 0.99294 0.85872 1.22351 0.94416 0.85174 1.00343 1.44357 1.62946 1.01305 1.24467 1.18693 0.96659 1.02243 1.23360 0.90139 1.25557 0.96889 0.96610 0.96274 1.69847 1.19961 1.42455 1.20488 0.87731 0.82577 0.82846 0.80429 1.21150 1.22113 1.15908 1.74039 0.97557 1.13002 1.25999 1.84777 1.10406 1.32356 1.68954 0.89397 0.89804 0.88799 0.79116 0.73246 0.73568 0.91233 0.90373 0.92945 0.89393 0.93258 0.89856 0.90801 0.93516 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 36.01 0.38 -0.15 16 2 C -0.03 -0.33 7.48 -35.38 -0.26 -0.60 16 3 C -0.22 -3.37 9.79 -39.19 -0.38 -3.75 16 4 C 0.25 4.09 8.17 -154.93 -1.27 2.82 16 5 N -0.61 -9.84 5.41 -11.86 -0.06 -9.91 16 6 C 0.52 9.40 7.85 -11.62 -0.09 9.31 16 7 O -0.48 -9.55 13.75 5.49 0.08 -9.48 16 8 C 0.51 9.46 7.89 -11.62 -0.09 9.37 16 9 O -0.54 -10.32 16.48 5.49 0.09 -10.23 16 10 N -0.65 -12.05 3.94 -60.76 -0.24 -12.29 16 11 C 0.14 2.27 4.48 -4.05 -0.02 2.25 16 12 C 0.12 2.11 3.21 -67.42 -0.22 1.90 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 14 C 0.06 0.86 6.29 37.31 0.23 1.09 16 15 O -0.39 -6.58 10.74 -35.23 -0.38 -6.96 16 16 C 0.04 0.70 6.98 37.31 0.26 0.96 16 17 C 0.10 1.99 4.49 -3.54 -0.02 1.97 16 18 N -0.60 -12.58 2.55 -164.30 -0.42 -13.00 16 19 C -0.28 -6.90 6.92 -15.06 -0.10 -7.00 16 20 H 0.08 2.19 6.60 -52.48 -0.35 1.85 16 21 C 0.05 1.31 5.19 -17.43 -0.09 1.22 16 22 N -0.89 -25.44 13.97 55.49 0.78 -24.66 16 23 Si 0.84 19.53 26.71 -169.99 -4.54 14.99 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.23 -5.00 3.95 56.52 0.22 -4.78 16 27 N -0.39 -6.07 12.10 31.18 0.38 -5.69 16 28 O 0.10 1.31 11.19 17.03 0.19 1.50 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.19 3.05 6.22 -52.49 -0.33 2.72 16 33 H 0.43 6.18 8.29 -40.82 -0.34 5.84 16 34 H 0.42 8.57 6.74 -40.82 -0.28 8.29 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.44 7.57 -51.93 -0.39 1.04 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.53 6.60 -51.93 -0.34 1.18 16 42 H 0.05 0.93 5.91 -51.93 -0.31 0.63 16 43 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -31.05 353.70 -5.92 -36.97 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.45 Total: 14.04 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: -1.67 Total: 19.39 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.43 Total: -65.55 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.02 Total: -25.16 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.54 Total: 14.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.05 -5.92 -36.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717143030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.654 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds