Wall clock time and date at job start Tue Mar 31 2020 21:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35235 * 126.69723 * 2 1 4 4 C 1.42049 * 103.95772 * 179.97438 * 3 2 1 5 5 N 1.39362 * 126.89859 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00035 * 359.97438 * 5 4 3 7 7 O 1.21358 * 119.99435 * 0.02562 * 6 5 4 8 8 C 1.49377 * 119.99993 * 179.97438 * 6 5 4 9 9 O 1.21358 * 119.99912 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00026 * 179.97438 * 8 6 5 11 11 C 1.46500 * 120.00210 * 180.02562 * 10 8 6 12 12 C 1.52993 * 109.47344 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.68075 * 299.56440 * 12 11 10 14 14 C 1.53296 * 109.68444 * 179.04437 * 12 11 10 15 15 O 1.42961 * 109.22373 * 187.93747 * 14 12 11 16 16 C 1.42964 * 114.16541 * 62.58042 * 15 14 12 17 17 C 1.53288 * 109.22372 * 297.41685 * 16 15 14 18 18 N 1.47150 * 108.38421 * 52.30431 * 17 16 15 19 19 C 1.36944 * 120.98082 * 129.48537 * 18 17 16 20 20 H 1.08005 * 119.99482 * 221.30387 * 19 18 17 21 21 C 1.38807 * 119.99877 * 41.30697 * 19 18 17 22 22 N 1.31627 * 119.99512 * 199.64803 * 21 19 18 23 23 Si 1.86796 * 120.00396 * 19.64283 * 21 19 18 24 24 H 1.48501 * 109.47053 * 96.45546 * 23 21 19 25 25 H 1.48505 * 109.47198 * 216.45481 * 23 21 19 26 26 H 1.48501 * 109.47219 * 336.45902 * 23 21 19 27 27 N 1.30749 * 106.20245 * 0.24126 * 4 3 2 28 28 O 1.20909 * 111.46991 * 359.57220 * 27 4 3 29 29 H 1.08996 * 109.46857 * 89.99678 * 1 2 3 30 30 H 1.08990 * 109.47474 * 210.00183 * 1 2 3 31 31 H 1.09007 * 109.46625 * 330.00563 * 1 2 3 32 32 H 1.07998 * 128.01991 * 359.95966 * 3 2 1 33 33 H 0.97002 * 120.00241 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99691 * 0.02562 * 10 8 6 35 35 H 1.08999 * 109.47048 * 60.00277 * 11 10 8 36 36 H 1.09006 * 109.46947 * 300.00568 * 11 10 8 37 37 H 1.09003 * 109.51299 * 307.85938 * 14 12 11 38 38 H 1.08996 * 109.50897 * 67.96022 * 14 12 11 39 39 H 1.09001 * 109.51225 * 57.34571 * 16 15 14 40 40 H 1.09006 * 109.50628 * 177.49505 * 16 15 14 41 41 H 1.09004 * 109.68505 * 172.02941 * 17 16 15 42 42 H 1.09004 * 109.68746 * 292.54273 * 17 16 15 43 43 H 0.97006 * 119.99750 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0843 0.0000 4 6 3.6252 0.5352 0.0006 5 7 4.8277 1.2397 0.0004 6 6 4.8192 2.5875 -0.0011 7 8 3.7643 3.1875 -0.0017 8 6 6.1081 3.3425 -0.0008 9 8 7.1629 2.7423 0.0003 10 7 6.0996 4.6902 -0.0027 11 6 7.3637 5.4307 -0.0030 12 6 7.0746 6.9331 -0.0047 13 1 6.5084 7.1970 -0.8980 14 6 8.3943 7.7128 0.0191 15 8 8.1163 9.1030 0.2037 16 6 7.4763 9.4121 1.4442 17 6 6.1097 8.7195 1.4933 18 7 6.3022 7.2914 1.1955 19 6 5.7777 6.3243 2.0109 20 1 6.3588 5.4457 2.2495 21 6 4.4992 6.4732 2.5306 22 7 4.1344 5.7811 3.5891 23 14 3.2965 7.6557 1.7279 24 1 2.4140 6.9080 0.7965 25 1 2.4707 8.3087 2.7753 26 1 4.0485 8.6906 0.9737 27 7 3.4764 -0.7637 -0.0044 28 8 2.3081 -1.0753 0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.0305 2.1261 -0.0006 33 1 5.6708 0.7600 0.0005 34 1 5.2565 5.1699 -0.0040 35 1 7.9374 5.1698 -0.8923 36 1 7.9364 5.1722 0.8877 37 1 9.0148 7.3535 0.8400 38 1 8.9197 7.5680 -0.9249 39 1 8.0935 9.0589 2.2703 40 1 7.3410 10.4907 1.5250 41 1 5.6766 8.8321 2.4873 42 1 5.4460 9.1636 0.7514 43 1 3.2411 5.8854 3.9525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717143030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:01 Heat of formation + Delta-G solvation = -21.795539 kcal Electronic energy + Delta-G solvation = -30156.568073 eV Core-core repulsion = 25820.598730 eV Total energy + Delta-G solvation = -4335.969344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.05132 -42.02938 -40.49870 -39.67804 -37.36217 -36.83206 -35.36510 -34.64602 -33.66295 -33.17911 -32.58797 -29.29858 -28.75154 -27.99195 -26.03755 -25.12920 -24.45472 -23.55358 -22.24749 -21.71214 -21.44567 -19.69785 -18.87739 -18.67391 -18.50802 -17.98058 -17.65838 -17.36918 -17.18267 -16.93256 -16.52467 -16.31743 -15.94676 -15.60790 -15.35871 -15.19645 -14.88104 -14.61998 -14.49374 -14.44665 -14.00763 -13.87652 -13.51778 -13.43442 -13.14910 -13.03721 -12.81450 -12.78530 -12.52328 -12.34299 -12.27333 -12.03191 -11.38797 -11.22041 -11.04181 -10.82412 -10.51236 -10.42812 -10.16888 -10.08191 -8.65046 -8.18271 -5.64422 -0.12490 0.46821 0.83096 1.15712 1.37247 1.49042 1.51477 2.01871 2.08757 2.32148 2.46324 2.90221 3.07369 3.17012 3.24830 3.31276 3.71732 3.91096 3.96120 4.14728 4.25190 4.27807 4.41322 4.46081 4.55818 4.58738 4.60561 4.71766 4.72572 4.80747 4.82706 4.99346 5.04248 5.05134 5.18759 5.22012 5.27137 5.58354 5.90141 6.15455 6.21236 6.28208 6.44272 6.81409 6.89305 7.13899 7.56425 8.03391 8.98989 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003464 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.903745 B = 8080.867950 C = 9340.514451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.002 3.998 3 C -0.257 4.257 4 C 0.230 3.770 5 N -0.602 5.602 6 C 0.520 3.480 7 O -0.503 6.503 8 C 0.513 3.487 9 O -0.547 6.547 10 N -0.653 5.653 11 C 0.135 3.865 12 C 0.121 3.879 13 H 0.059 0.941 14 C 0.059 3.941 15 O -0.391 6.391 16 C 0.051 3.949 17 C 0.096 3.904 18 N -0.617 5.617 19 C -0.244 4.244 20 H 0.048 0.952 21 C -0.002 4.002 22 N -0.942 5.942 23 Si 0.886 3.114 24 H -0.300 1.300 25 H -0.309 1.309 26 H -0.198 1.198 27 N -0.400 5.400 28 O 0.103 5.897 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.179 0.821 33 H 0.435 0.565 34 H 0.416 0.584 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.045 0.955 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -3.986 -10.369 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.280 4.280 4 C -0.019 4.019 5 N -0.256 5.256 6 C 0.301 3.699 7 O -0.375 6.375 8 C 0.292 3.708 9 O -0.427 6.427 10 N -0.303 5.303 11 C 0.013 3.987 12 C 0.016 3.984 13 H 0.077 0.923 14 C -0.019 4.019 15 O -0.309 6.309 16 C -0.027 4.027 17 C -0.028 4.028 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.065 0.935 21 C -0.200 4.200 22 N -0.585 5.585 23 Si 0.714 3.286 24 H -0.228 1.228 25 H -0.236 1.236 26 H -0.122 1.122 27 N -0.116 5.116 28 O 0.041 5.959 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.196 0.804 33 H 0.275 0.725 34 H 0.255 0.745 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.086 -4.805 -10.398 11.506 hybrid contribution -1.210 0.754 0.763 1.617 sum -2.296 -4.050 -9.635 10.701 Atomic orbital electron populations 1.20649 0.79903 1.06303 1.06063 1.25143 0.98103 0.84154 0.98813 1.22776 0.89546 1.02717 1.12954 1.20704 0.88562 0.89394 1.03195 1.41969 1.07399 1.05498 1.70698 1.20484 0.90679 0.82019 0.76683 1.90737 1.32806 1.68430 1.45481 1.19350 0.87855 0.84042 0.79576 1.90718 1.31779 1.68789 1.51376 1.45828 1.12344 1.04328 1.67808 1.21454 0.84481 0.90177 1.02630 1.21759 0.94237 0.92361 0.90091 0.92294 1.22977 0.94697 0.81173 1.03080 1.87843 1.79473 1.24630 1.38958 1.23098 0.93030 1.00713 0.85888 1.22389 0.96495 0.84445 0.99479 1.44498 1.63024 1.01385 1.25525 1.18411 0.95548 1.01471 1.21881 0.93477 1.26064 0.98567 0.98542 0.96870 1.69976 1.20013 1.45685 1.22875 0.86969 0.80549 0.81876 0.79170 1.22844 1.23624 1.12157 1.74034 0.98597 1.12581 1.26377 1.84752 1.10078 1.32709 1.68336 0.86933 0.87422 0.88064 0.80386 0.72526 0.74526 0.87829 0.92260 0.93180 0.85623 0.93631 0.86819 0.92420 0.93146 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.45 71.24 0.74 -0.12 16 2 C 0.00 0.04 7.48 24.99 0.19 0.23 16 3 C -0.26 -7.86 9.79 22.52 0.22 -7.64 16 4 C 0.23 7.58 8.17 134.15 1.10 8.67 16 5 N -0.60 -19.95 5.41 -310.81 -1.68 -21.63 16 6 C 0.52 19.43 7.85 87.25 0.68 20.12 16 7 O -0.50 -20.88 13.75 -3.27 -0.04 -20.93 16 8 C 0.51 19.25 7.89 87.25 0.69 19.93 16 9 O -0.55 -20.92 16.48 -3.27 -0.05 -20.97 16 10 N -0.65 -24.32 3.94 -464.49 -1.83 -26.15 16 11 C 0.14 4.37 4.48 86.38 0.39 4.76 16 12 C 0.12 3.91 3.21 44.96 0.14 4.05 16 13 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 14 C 0.06 1.60 6.29 72.08 0.45 2.06 16 15 O -0.39 -11.74 10.74 -148.98 -1.60 -13.34 16 16 C 0.05 1.52 6.98 72.08 0.50 2.03 16 17 C 0.10 3.55 4.49 86.35 0.39 3.94 16 18 N -0.62 -24.99 2.55 -673.73 -1.72 -26.70 16 19 C -0.24 -12.11 6.92 84.03 0.58 -11.52 16 20 H 0.05 2.67 6.60 -2.91 -0.02 2.65 16 21 C 0.00 -0.12 5.19 84.86 0.44 0.32 16 22 N -0.94 -56.32 13.97 21.65 0.30 -56.02 16 23 Si 0.89 40.98 26.71 68.60 1.83 42.81 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 25 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.20 -7.92 3.95 99.48 0.39 -7.53 16 27 N -0.40 -12.41 12.10 -56.35 -0.68 -13.09 16 28 O 0.10 2.70 11.19 71.12 0.80 3.49 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.18 5.95 6.22 -2.91 -0.02 5.93 16 33 H 0.43 12.85 8.29 -92.71 -0.77 12.09 16 34 H 0.42 17.00 6.74 -92.71 -0.63 16.38 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.06 2.16 7.57 -2.38 -0.02 2.14 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 41 H 0.06 2.32 6.60 -2.39 -0.02 2.30 16 42 H 0.05 1.85 5.91 -2.39 -0.01 1.83 16 43 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -69.63 353.70 1.22 -68.41 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.62 Total: 37.30 kcal Atomic # 6 Polarization: 40.30 SS G_CDS: 6.52 Total: 46.82 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -5.61 Total: -143.59 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.90 Total: -51.75 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.83 Total: 42.81 kcal Total: -69.63 1.22 -68.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717143030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.613 kcal (2) G-P(sol) polarization free energy of solvation -69.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds