Wall clock time and date at job start Tue Mar 31 2020 22:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29942 * 125.37760 * 2 1 4 4 C 1.36072 * 108.47162 * 180.15950 * 3 2 1 5 5 C 1.47422 * 126.44384 * 179.82024 * 4 3 2 6 6 O 1.21611 * 119.99886 * 179.68904 * 5 4 3 7 7 N 1.34783 * 120.00140 * 359.68973 * 5 4 3 8 8 C 1.46494 * 120.00239 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47237 * 180.02562 * 8 7 5 10 10 O 1.42895 * 113.38379 * 51.91843 * 9 8 7 11 11 C 1.53517 * 114.16834 * 185.00037 * 9 8 7 12 12 N 1.47479 * 87.99753 * 139.69722 * 11 9 8 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 O 1.21298 * 119.99843 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00361 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99875 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00336 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99735 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00065 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46917 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47335 * 120.00017 * 21 19 17 24 24 H 1.48508 * 109.46814 * 240.00064 * 21 19 17 25 25 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 26 26 C 1.36090 * 107.10186 * 359.55912 * 4 3 2 27 27 O 1.34047 * 125.37735 * 179.66445 * 2 1 3 28 28 H 1.09001 * 109.46995 * 180.34878 * 1 2 3 29 29 H 1.08993 * 109.47582 * 300.35659 * 1 2 3 30 30 H 1.09007 * 109.46828 * 60.35422 * 1 2 3 31 31 H 0.97003 * 119.99748 * 359.97438 * 7 5 4 32 32 H 1.08997 * 109.47137 * 59.99546 * 8 7 5 33 33 H 1.09004 * 109.46597 * 300.00374 * 8 7 5 34 34 H 0.96692 * 114.00048 * 313.07846 * 10 9 8 35 35 H 1.09002 * 113.47888 * 24.90080 * 11 9 8 36 36 H 1.09003 * 113.47419 * 254.49414 * 11 9 8 37 37 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 38 38 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 39 39 H 0.96998 * 120.00051 * 0.02562 * 16 14 13 40 40 H 0.97008 * 119.99766 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.47573 * 141.77409 * 25 12 11 42 42 H 1.08996 * 113.47515 * 272.18523 * 25 12 11 43 43 H 1.08001 * 126.51890 * 180.28172 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6638 -0.0036 5 6 4.7440 1.5438 -0.0086 6 8 5.8605 1.0618 -0.0057 7 7 4.5879 2.8825 -0.0163 8 6 5.7632 3.7570 -0.0218 9 6 5.3113 5.2187 -0.0294 10 8 4.3716 5.5272 1.0019 11 6 6.4586 6.2306 -0.1578 12 7 5.5992 7.0115 -1.0670 13 6 6.3699 7.5282 -2.2057 14 6 5.4272 8.1047 -3.2303 15 8 4.2307 8.0865 -3.0316 16 7 5.9133 8.6396 -4.3679 17 6 5.0555 9.1636 -5.3002 18 1 3.9902 9.1474 -5.1233 19 6 5.5566 9.7146 -6.4732 20 7 6.8528 9.7329 -6.6891 21 14 4.3879 10.4292 -7.7432 22 1 2.9895 10.2861 -7.2648 23 1 4.6973 11.8672 -7.9469 24 1 4.5480 9.7016 -9.0279 25 6 4.9195 5.7504 -1.4174 26 6 3.5659 -0.6971 0.0042 27 8 2.2831 -1.0929 0.0064 28 1 -0.3633 -1.0277 0.0063 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5084 -0.8932 31 1 3.6973 3.2670 -0.0189 32 1 6.3611 3.5565 -0.9108 33 1 6.3617 3.5667 0.8691 34 1 3.6501 4.8883 1.0806 35 1 7.3455 5.8224 -0.6424 36 1 6.6878 6.7477 0.7741 37 1 7.0510 8.3060 -1.8605 38 1 6.9427 6.7168 -2.6549 39 1 6.8700 8.6532 -4.5273 40 1 7.2026 10.1173 -7.5082 41 1 3.8435 5.8600 -1.5526 42 1 5.3951 5.2145 -2.2388 43 1 4.4361 -1.3368 0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724444689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:26 Heat of formation + Delta-G solvation = -47.584670 kcal Electronic energy + Delta-G solvation = -28439.326043 eV Core-core repulsion = 24102.238399 eV Total energy + Delta-G solvation = -4337.087644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.87377 -40.82297 -39.57834 -37.92506 -35.92510 -35.36877 -34.46854 -33.88015 -32.69719 -31.29229 -30.39308 -28.47242 -27.63365 -25.96399 -25.16577 -24.14551 -22.55006 -21.87185 -20.93975 -20.02517 -19.28028 -18.80927 -17.86235 -17.37222 -17.18222 -16.63690 -16.38737 -15.82089 -15.62522 -15.39192 -15.28990 -14.74315 -14.54400 -14.31997 -14.15592 -13.97147 -13.67312 -13.64229 -13.47200 -13.10516 -13.05472 -13.03716 -12.35957 -12.05426 -11.84744 -11.68651 -11.49256 -11.31461 -11.27646 -11.05110 -10.77634 -10.48910 -10.34133 -10.22309 -9.90466 -9.57670 -9.50986 -9.34071 -8.72254 -8.25251 -7.96244 -6.41686 -3.82392 0.67453 1.55121 2.11562 2.65475 2.92581 3.16284 3.26772 3.34167 3.39804 3.70660 3.89625 4.00902 4.17020 4.23475 4.32396 4.36897 4.57994 4.77963 4.86045 4.88066 5.00195 5.08903 5.18107 5.22180 5.25079 5.27241 5.41380 5.45043 5.62129 5.66340 5.68079 5.76917 5.82939 5.95519 6.12927 6.24891 6.55871 6.88475 7.13501 7.18278 7.45676 7.55496 7.76163 8.05970 8.61525 9.18209 9.54144 10.05966 10.76202 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002187 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.547493 B =12797.401518 C =13872.392585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.201 3.799 3 N -0.462 5.462 4 C -0.073 4.073 5 C 0.606 3.394 6 O -0.534 6.534 7 N -0.711 5.711 8 C 0.104 3.896 9 C 0.087 3.913 10 O -0.518 6.518 11 C 0.013 3.987 12 N -0.429 5.429 13 C 0.006 3.994 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.009 4.009 26 C 0.014 3.986 27 O -0.197 6.197 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.373 0.627 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -21.602 14.946 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.008 4.008 3 N -0.193 5.193 4 C -0.193 4.193 5 C 0.392 3.608 6 O -0.411 6.411 7 N -0.363 5.363 8 C -0.020 4.020 9 C 0.044 3.956 10 O -0.322 6.322 11 C -0.117 4.117 12 N -0.151 5.151 13 C -0.126 4.126 14 C 0.230 3.770 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.138 4.138 26 C -0.060 4.060 27 O -0.083 6.083 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.245 0.755 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.220 0.780 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.761 -20.111 15.217 25.869 hybrid contribution 0.292 -1.120 -1.409 1.823 sum -5.469 -21.231 13.809 25.911 Atomic orbital electron populations 1.20353 0.80658 1.05074 1.05624 1.26390 0.96738 0.78164 0.99547 1.70759 1.00570 1.30020 1.17980 1.21723 0.92106 0.93050 1.12398 1.16683 0.86248 0.81664 0.76244 1.90845 1.24301 1.75329 1.50623 1.45664 1.10737 1.05498 1.74410 1.22030 0.88055 0.87986 1.03905 1.22611 0.92501 0.91094 0.89386 1.86627 1.39047 1.52871 1.53692 1.23996 0.94326 0.93394 0.99966 1.68903 1.15955 1.19666 1.10584 1.22546 0.96493 1.00699 0.92899 1.19642 0.89114 0.84719 0.83575 1.90531 1.15744 1.61543 1.78268 1.41874 1.09794 1.52416 1.16122 1.19744 0.91971 1.34313 0.96672 0.87897 1.25266 0.96442 0.97814 0.98500 1.69624 1.11473 1.45967 1.27293 0.85800 0.80266 0.78418 0.79868 1.19217 1.20715 1.20782 1.24475 1.03511 0.90777 0.95023 1.25287 0.84899 0.95623 1.00153 1.84415 1.16704 1.37980 1.69158 0.89107 0.88084 0.88010 0.75511 0.89677 0.89849 0.77962 0.89892 0.88448 0.88825 0.92609 0.77496 0.91933 0.88500 0.90841 0.75232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.20 1.53 8.30 -13.08 -0.11 1.42 16 3 N -0.46 -4.54 11.06 -7.65 -0.08 -4.62 16 4 C -0.07 -0.75 6.99 -83.02 -0.58 -1.33 16 5 C 0.61 7.05 7.81 -12.52 -0.10 6.95 16 6 O -0.53 -7.46 16.89 5.27 0.09 -7.37 16 7 N -0.71 -7.28 5.32 -61.39 -0.33 -7.61 16 8 C 0.10 1.09 5.36 -4.05 -0.02 1.06 16 9 C 0.09 1.04 1.65 -89.99 -0.15 0.90 16 10 O -0.52 -6.50 13.56 -35.23 -0.48 -6.98 16 11 C 0.01 0.16 7.13 -7.54 -0.05 0.11 16 12 N -0.43 -7.39 6.06 -245.81 -1.49 -8.88 16 13 C 0.01 0.10 5.31 -4.98 -0.03 0.08 16 14 C 0.44 10.71 7.62 -10.99 -0.08 10.63 16 15 O -0.58 -15.99 15.34 5.54 0.08 -15.91 16 16 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 21 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.01 -0.13 6.14 -7.44 -0.05 -0.18 16 26 C 0.01 0.12 11.95 29.96 0.36 0.47 16 27 O -0.20 -1.53 10.73 6.53 0.07 -1.46 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.41 3.78 6.98 -40.82 -0.28 3.50 16 32 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.37 3.37 7.51 45.56 0.34 3.71 16 35 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 39 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 41 H 0.10 1.69 8.13 -51.93 -0.42 1.27 16 42 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 43 H 0.23 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -36.92 375.89 -6.26 -43.18 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -4.76 Total: 14.15 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -0.67 Total: 12.23 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -1.23 Total: -59.72 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.23 Total: -31.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.92 -6.26 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724444689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.403 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds