Wall clock time and date at job start Tue Mar 31 2020 22:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29942 * 125.37760 * 2 1 4 4 C 1.36072 * 108.47162 * 180.15950 * 3 2 1 5 5 C 1.47422 * 126.44384 * 179.82024 * 4 3 2 6 6 O 1.21611 * 119.99886 * 179.68904 * 5 4 3 7 7 N 1.34783 * 120.00140 * 359.68973 * 5 4 3 8 8 C 1.46494 * 120.00239 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47237 * 180.02562 * 8 7 5 10 10 O 1.42895 * 113.38379 * 51.91843 * 9 8 7 11 11 C 1.53517 * 114.16834 * 185.00037 * 9 8 7 12 12 N 1.47479 * 87.99753 * 139.69722 * 11 9 8 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 O 1.21298 * 119.99843 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00361 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99875 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00336 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99735 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00065 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46917 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47335 * 120.00017 * 21 19 17 24 24 H 1.48508 * 109.46814 * 240.00064 * 21 19 17 25 25 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 26 26 C 1.36090 * 107.10186 * 359.55912 * 4 3 2 27 27 O 1.34047 * 125.37735 * 179.66445 * 2 1 3 28 28 H 1.09001 * 109.46995 * 180.34878 * 1 2 3 29 29 H 1.08993 * 109.47582 * 300.35659 * 1 2 3 30 30 H 1.09007 * 109.46828 * 60.35422 * 1 2 3 31 31 H 0.97003 * 119.99748 * 359.97438 * 7 5 4 32 32 H 1.08997 * 109.47137 * 59.99546 * 8 7 5 33 33 H 1.09004 * 109.46597 * 300.00374 * 8 7 5 34 34 H 0.96692 * 114.00048 * 313.07846 * 10 9 8 35 35 H 1.09002 * 113.47888 * 24.90080 * 11 9 8 36 36 H 1.09003 * 113.47419 * 254.49414 * 11 9 8 37 37 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 38 38 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 39 39 H 0.96998 * 120.00051 * 0.02562 * 16 14 13 40 40 H 0.97008 * 119.99766 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.47573 * 141.77409 * 25 12 11 42 42 H 1.08996 * 113.47515 * 272.18523 * 25 12 11 43 43 H 1.08001 * 126.51890 * 180.28172 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6638 -0.0036 5 6 4.7440 1.5438 -0.0086 6 8 5.8605 1.0618 -0.0057 7 7 4.5879 2.8825 -0.0163 8 6 5.7632 3.7570 -0.0218 9 6 5.3113 5.2187 -0.0294 10 8 4.3716 5.5272 1.0019 11 6 6.4586 6.2306 -0.1578 12 7 5.5992 7.0115 -1.0670 13 6 6.3699 7.5282 -2.2057 14 6 5.4272 8.1047 -3.2303 15 8 4.2307 8.0865 -3.0316 16 7 5.9133 8.6396 -4.3679 17 6 5.0555 9.1636 -5.3002 18 1 3.9902 9.1474 -5.1233 19 6 5.5566 9.7146 -6.4732 20 7 6.8528 9.7329 -6.6891 21 14 4.3879 10.4292 -7.7432 22 1 2.9895 10.2861 -7.2648 23 1 4.6973 11.8672 -7.9469 24 1 4.5480 9.7016 -9.0279 25 6 4.9195 5.7504 -1.4174 26 6 3.5659 -0.6971 0.0042 27 8 2.2831 -1.0929 0.0064 28 1 -0.3633 -1.0277 0.0063 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5084 -0.8932 31 1 3.6973 3.2670 -0.0189 32 1 6.3611 3.5565 -0.9108 33 1 6.3617 3.5667 0.8691 34 1 3.6501 4.8883 1.0806 35 1 7.3455 5.8224 -0.6424 36 1 6.6878 6.7477 0.7741 37 1 7.0510 8.3060 -1.8605 38 1 6.9427 6.7168 -2.6549 39 1 6.8700 8.6532 -4.5273 40 1 7.2026 10.1173 -7.5082 41 1 3.8435 5.8600 -1.5526 42 1 5.3951 5.2145 -2.2388 43 1 4.4361 -1.3368 0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724444689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:25 Heat of formation + Delta-G solvation = -83.954687 kcal Electronic energy + Delta-G solvation = -28440.903166 eV Core-core repulsion = 24102.238399 eV Total energy + Delta-G solvation = -4338.664766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.48690 -41.94444 -40.57274 -39.72949 -37.06259 -36.04454 -35.92139 -35.35841 -33.32909 -33.18876 -31.66493 -29.24294 -28.56074 -27.09999 -26.87574 -25.18994 -23.70815 -22.51577 -21.73724 -21.08357 -21.02753 -19.95270 -19.58678 -18.01093 -17.97142 -17.85552 -17.49220 -17.11350 -16.74792 -16.60571 -16.48655 -16.30691 -15.69352 -15.51124 -15.28059 -14.99944 -14.86407 -14.57785 -14.43367 -14.15253 -13.91710 -13.74530 -13.50117 -13.44384 -13.29325 -13.01326 -12.91962 -12.49843 -12.43054 -12.36324 -12.13865 -11.95063 -11.84915 -11.53323 -11.43085 -10.96439 -10.41199 -10.37159 -10.04008 -10.00909 -9.78664 -8.49042 -5.97830 0.01430 0.89398 1.34629 1.39865 1.54180 1.55163 1.87651 2.01931 2.12432 2.26949 2.69700 2.82023 2.88358 3.16857 3.19743 3.33187 3.55014 3.66037 3.76328 3.96817 4.18384 4.24549 4.38969 4.39297 4.42367 4.51120 4.53199 4.57641 4.64396 4.67325 4.73183 4.74779 4.83124 4.89096 5.10576 5.22345 5.31694 5.39016 5.84263 6.03487 6.12402 6.47470 6.57692 6.60861 6.91579 7.10420 7.53081 8.09173 8.68625 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002187 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.547493 B =12797.401518 C =13872.392585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.202 3.798 3 N -0.490 5.490 4 C -0.104 4.104 5 C 0.605 3.395 6 O -0.563 6.563 7 N -0.706 5.706 8 C 0.113 3.887 9 C 0.109 3.891 10 O -0.533 6.533 11 C 0.018 3.982 12 N -0.466 5.466 13 C 0.018 3.982 14 C 0.440 3.560 15 O -0.620 6.620 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.269 1.269 25 C -0.014 4.014 26 C 0.027 3.973 27 O -0.196 6.196 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.386 0.614 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -22.748 15.271 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.007 4.007 3 N -0.220 5.220 4 C -0.223 4.223 5 C 0.392 3.608 6 O -0.442 6.442 7 N -0.358 5.358 8 C -0.011 4.011 9 C 0.067 3.933 10 O -0.339 6.339 11 C -0.111 4.111 12 N -0.188 5.188 13 C -0.113 4.113 14 C 0.227 3.773 15 O -0.506 6.506 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.816 3.184 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.144 4.144 26 C -0.047 4.047 27 O -0.082 6.082 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.249 0.751 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.236 0.764 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.468 -21.250 15.556 26.897 hybrid contribution 0.129 -0.796 -1.464 1.671 sum -5.339 -22.047 14.092 26.705 Atomic orbital electron populations 1.20612 0.77843 1.06790 1.06411 1.27251 0.98068 0.77596 0.97776 1.70734 1.00657 1.31185 1.19463 1.21694 0.92042 0.93803 1.14775 1.16868 0.86350 0.81937 0.75620 1.90818 1.25349 1.75801 1.52237 1.45636 1.10958 1.05311 1.73898 1.21936 0.88044 0.86603 1.04476 1.22367 0.91861 0.91964 0.87134 1.86592 1.39804 1.54003 1.53516 1.24110 0.94883 0.92731 0.99338 1.68872 1.17763 1.21283 1.10878 1.22443 0.95209 1.01907 0.91762 1.20737 0.89564 0.83211 0.83782 1.90499 1.18113 1.62795 1.79151 1.41942 1.09710 1.52937 1.16543 1.19668 0.91371 1.36688 0.98474 0.90541 1.26047 0.98132 0.97432 0.99686 1.69678 1.12516 1.45868 1.28012 0.84874 0.77794 0.78165 0.77520 1.19896 1.19511 1.19453 1.24489 1.01616 0.90852 0.97411 1.25769 0.85615 0.95239 0.98063 1.84452 1.16645 1.38071 1.69064 0.86951 0.86903 0.87384 0.75057 0.89449 0.88845 0.76376 0.86893 0.87722 0.86948 0.89784 0.76940 0.91255 0.91596 0.90492 0.72844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.24 0.75 0.46 16 2 C 0.20 2.84 8.30 88.39 0.73 3.58 16 3 N -0.49 -9.38 11.06 -293.03 -3.24 -12.62 16 4 C -0.10 -2.10 6.99 40.41 0.28 -1.82 16 5 C 0.61 13.84 7.81 86.66 0.68 14.52 16 6 O -0.56 -15.40 16.89 -4.07 -0.07 -15.47 16 7 N -0.71 -14.08 5.32 -466.38 -2.48 -16.55 16 8 C 0.11 2.19 5.36 86.38 0.46 2.66 16 9 C 0.11 2.50 1.65 -10.38 -0.02 2.49 16 10 O -0.53 -12.92 13.56 -148.98 -2.02 -14.94 16 11 C 0.02 0.42 7.13 83.58 0.60 1.01 16 12 N -0.47 -15.67 6.06 -931.94 -5.65 -21.32 16 13 C 0.02 0.64 5.31 85.56 0.45 1.10 16 14 C 0.44 21.55 7.62 87.66 0.67 22.22 16 15 O -0.62 -35.54 15.34 -3.08 -0.05 -35.59 16 16 N -0.57 -30.03 5.29 -306.98 -1.62 -31.65 16 17 C -0.33 -19.23 9.68 84.04 0.81 -18.41 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 20 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 21 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.01 -0.44 6.14 83.64 0.51 0.08 16 26 C 0.03 0.41 11.95 67.32 0.80 1.22 16 27 O -0.20 -2.78 10.73 0.45 0.00 -2.77 16 28 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 30 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.41 7.58 6.98 -92.71 -0.65 6.94 16 32 H 0.09 1.70 8.01 -2.39 -0.02 1.68 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.39 6.78 7.51 -74.06 -0.56 6.23 16 35 H 0.11 1.96 7.73 -2.39 -0.02 1.94 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.08 2.47 7.56 -2.39 -0.02 2.45 16 39 H 0.40 19.58 7.90 -92.71 -0.73 18.84 16 40 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 41 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 42 H 0.08 2.27 7.57 -2.39 -0.02 2.25 16 43 H 0.26 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -81.32 375.89 -6.45 -87.77 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -0.84 Total: 38.57 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 7.21 Total: 28.84 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -12.71 Total: -131.91 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -2.13 Total: -68.77 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -81.32 -6.45 -87.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724444689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.813 kcal (2) G-P(sol) polarization free energy of solvation -81.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds