Wall clock time and date at job start Tue Mar 31 2020 20:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48496 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46991 * 300.00160 * 3 2 1 6 6 H 1.48502 * 109.47317 * 60.00042 * 3 2 1 7 7 C 1.38947 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00277 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99285 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00276 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46830 * 179.97438 * 12 10 9 14 14 C 1.47968 * 110.99864 * 170.00110 * 13 12 10 15 15 C 1.53933 * 86.18032 * 222.42061 * 14 13 12 16 16 O 1.42902 * 113.73363 * 269.25216 * 15 14 13 17 17 C 1.53004 * 113.73420 * 138.07891 * 15 14 13 18 18 N 1.46499 * 109.47198 * 184.99807 * 17 15 14 19 19 C 1.34777 * 119.99665 * 180.27868 * 18 17 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.50698 * 109.46944 * 179.97438 * 21 19 18 23 23 C 1.41382 * 128.00861 * 269.67348 * 22 21 19 24 24 N 1.30173 * 106.39745 * 179.89418 * 23 22 21 25 25 O 1.20923 * 111.60553 * 0.39157 * 24 23 22 26 26 C 1.34038 * 111.56506 * 359.74474 * 25 24 23 27 27 C 1.47965 * 111.00146 * 70.64557 * 13 12 10 28 28 H 0.97002 * 120.00392 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00499 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47080 * 60.00580 * 12 10 9 31 31 H 1.08997 * 109.47369 * 300.00432 * 12 10 9 32 32 H 1.08992 * 113.76021 * 108.09924 * 14 13 12 33 33 H 1.09007 * 113.75530 * 336.74044 * 14 13 12 34 34 H 0.96697 * 114.00114 * 178.10306 * 16 15 14 35 35 H 1.09009 * 109.46730 * 64.99594 * 17 15 14 36 36 H 1.08998 * 109.46846 * 305.00138 * 17 15 14 37 37 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 38 38 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 39 39 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 40 40 H 1.07999 * 126.80026 * 0.03790 * 23 22 21 41 41 H 1.07997 * 126.77541 * 179.97438 * 26 25 24 42 42 H 1.09004 * 113.75373 * 23.25693 * 27 13 12 43 43 H 1.08996 * 113.75807 * 251.89703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.5093 -7.2665 0.2408 15 6 2.6866 -7.6049 1.1730 16 8 3.7632 -8.2791 0.5185 17 6 2.2637 -8.2830 2.4778 18 7 3.4348 -8.4540 3.3411 19 6 3.3024 -9.0383 4.5484 20 8 2.2128 -9.4179 4.9222 21 6 4.5081 -9.2197 5.4340 22 6 4.0925 -9.8921 6.7170 23 6 3.6697 -9.2840 7.9213 24 7 3.4123 -10.2529 8.7516 25 8 3.6165 -11.3344 8.2509 26 6 4.0430 -11.2188 6.9854 27 6 2.8921 -6.0849 1.3031 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8887 31 1 0.6175 -4.9205 0.8913 32 1 1.4501 -7.9043 -0.6411 33 1 0.5551 -7.1639 0.7577 34 1 4.5170 -8.4678 1.0940 35 1 1.8300 -9.2583 2.2563 36 1 1.5247 -7.6637 2.9861 37 1 4.3063 -8.1507 3.0420 38 1 5.2454 -9.8380 4.9218 39 1 4.9436 -8.2462 5.6590 40 1 3.5763 -8.2253 8.1134 41 1 4.2975 -12.0245 6.3127 42 1 2.3424 -5.6366 2.1308 43 1 3.9376 -5.7787 1.2700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724467452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:51 Heat of formation + Delta-G solvation = -9.271561 kcal Electronic energy + Delta-G solvation = -28300.606830 eV Core-core repulsion = 23965.180567 eV Total energy + Delta-G solvation = -4335.426263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.26832 -40.82619 -39.75368 -37.98240 -35.94856 -35.02621 -34.55572 -33.92327 -32.51824 -31.33984 -30.62542 -29.39595 -27.19442 -26.22208 -24.92727 -23.38926 -22.81243 -22.06224 -20.86682 -20.05669 -19.26545 -18.44636 -18.07948 -17.89733 -17.59976 -16.83130 -16.48907 -15.96988 -15.81047 -15.54067 -15.30103 -15.06447 -14.70188 -14.36641 -14.10326 -13.88342 -13.69991 -13.54074 -13.37838 -13.18411 -13.09210 -12.57412 -12.30888 -12.09872 -11.93223 -11.60523 -11.53474 -11.34843 -11.08118 -10.83903 -10.73399 -10.37810 -10.33440 -10.26404 -10.02628 -9.76865 -9.55806 -9.52406 -8.71710 -8.28429 -8.00581 -6.45605 -3.86576 1.14099 1.85227 2.22037 2.71878 2.93507 3.13171 3.24044 3.30904 3.61043 3.84408 3.89317 3.93316 4.14552 4.18029 4.27508 4.29947 4.45356 4.50177 4.71520 4.81606 4.90307 5.04256 5.18033 5.19707 5.22578 5.27332 5.37777 5.41021 5.57399 5.63757 5.64361 5.73256 5.78301 5.91206 6.07523 6.20037 6.52867 6.97396 7.08290 7.35602 7.51486 7.78459 7.90715 8.01530 8.56872 9.13877 9.49686 10.01035 10.72149 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.002009 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.743557 B =13936.006783 C =15126.352163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.007 3.993 13 N -0.440 5.440 14 C 0.017 3.983 15 C 0.088 3.912 16 O -0.521 6.521 17 C 0.101 3.899 18 N -0.729 5.729 19 C 0.514 3.486 20 O -0.529 6.529 21 C -0.064 4.064 22 C -0.187 4.187 23 C 0.005 3.995 24 N -0.365 5.365 25 O 0.097 5.903 26 C -0.044 4.044 27 C 0.000 4.000 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.371 0.629 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.189 0.811 41 H 0.215 0.785 42 H 0.074 0.926 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -21.624 9.842 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.125 4.125 13 N -0.162 5.162 14 C -0.112 4.112 15 C 0.045 3.955 16 O -0.325 6.325 17 C -0.023 4.023 18 N -0.383 5.383 19 C 0.300 3.700 20 O -0.405 6.405 21 C -0.104 4.104 22 C -0.192 4.192 23 C -0.174 4.174 24 N -0.069 5.069 25 O 0.033 5.967 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.206 0.794 41 H 0.232 0.768 42 H 0.092 0.908 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.288 -21.617 10.259 24.740 hybrid contribution 0.116 1.449 0.091 1.456 sum 6.404 -20.168 10.351 23.556 Atomic orbital electron populations 1.69617 1.05944 1.28108 1.50567 1.25275 0.95653 0.99767 0.97316 0.85797 0.79684 0.81102 0.77740 1.19223 1.20699 1.20756 1.19738 0.93367 0.82172 1.47543 0.87877 1.41880 1.09199 1.04609 1.64366 1.19647 0.88357 0.84470 0.84672 1.90520 1.13608 1.86989 1.55218 1.22514 0.95192 0.92726 1.02075 1.68478 1.17985 0.99629 1.30153 1.24128 0.94452 0.93444 0.99189 1.23057 0.90066 0.91590 0.90768 1.86649 1.27959 1.78691 1.39211 1.22045 0.88577 1.02003 0.89672 1.45880 1.12001 1.62425 1.17962 1.20519 0.90686 0.77343 0.81425 1.90760 1.27908 1.48817 1.72979 1.19891 0.96523 1.03139 0.90890 1.20701 1.08264 0.93325 0.96894 1.24950 1.01055 1.01268 0.90170 1.73878 1.18703 0.91379 1.22920 1.84821 1.61667 1.26644 1.23579 1.25773 1.00861 0.98722 0.87195 1.24521 1.03122 0.93123 0.92184 0.91882 0.77486 0.88892 0.92736 0.88107 0.89883 0.78205 0.90254 0.90081 0.76506 0.87130 0.86971 0.79371 0.76823 0.90838 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.32 7.59 -10.98 -0.08 10.24 16 11 O -0.58 -15.44 15.12 5.54 0.08 -15.36 16 12 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 13 N -0.44 -7.09 5.95 -239.63 -1.43 -8.51 16 14 C 0.02 0.20 7.38 -2.76 -0.02 0.18 16 15 C 0.09 0.92 1.52 -89.69 -0.14 0.78 16 16 O -0.52 -5.46 13.50 -35.23 -0.48 -5.94 16 17 C 0.10 0.90 5.28 -4.04 -0.02 0.88 16 18 N -0.73 -4.94 5.34 -60.29 -0.32 -5.26 16 19 C 0.51 4.24 7.82 -10.99 -0.09 4.15 16 20 O -0.53 -6.85 16.03 5.55 0.09 -6.76 16 21 C -0.06 -0.30 6.28 -29.04 -0.18 -0.49 16 22 C -0.19 -1.37 4.82 -104.42 -0.50 -1.88 16 23 C 0.00 0.04 12.16 -17.06 -0.21 -0.16 16 24 N -0.37 -3.96 12.07 30.35 0.37 -3.59 16 25 O 0.10 0.91 11.20 17.18 0.19 1.10 16 26 C -0.04 -0.29 12.26 29.74 0.36 0.08 16 27 C 0.00 -0.01 6.16 -2.77 -0.02 -0.02 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.82 7.75 -51.93 -0.40 0.41 16 34 H 0.37 2.25 7.61 45.56 0.35 2.60 16 35 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 37 H 0.40 1.62 7.31 -40.82 -0.30 1.33 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.19 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.22 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 43 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -37.87 374.53 -6.15 -44.02 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.78 Total: 10.72 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.16 Total: 5.93 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.71 Total: -55.19 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.11 Total: -26.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.87 -6.15 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724467452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.746 kcal (2) G-P(sol) polarization free energy of solvation -37.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds