Wall clock time and date at job start Tue Mar 31 2020 20:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99866 * 2 1 4 4 H 1.48496 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46991 * 300.00160 * 3 2 1 6 6 H 1.48502 * 109.47317 * 60.00042 * 3 2 1 7 7 C 1.38947 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00277 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99285 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00276 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46830 * 179.97438 * 12 10 9 14 14 C 1.47968 * 110.99864 * 170.00110 * 13 12 10 15 15 C 1.53933 * 86.18032 * 222.42061 * 14 13 12 16 16 O 1.42902 * 113.73363 * 269.25216 * 15 14 13 17 17 C 1.53004 * 113.73420 * 138.07891 * 15 14 13 18 18 N 1.46499 * 109.47198 * 184.99807 * 17 15 14 19 19 C 1.34777 * 119.99665 * 180.27868 * 18 17 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.50698 * 109.46944 * 179.97438 * 21 19 18 23 23 C 1.41382 * 128.00861 * 269.67348 * 22 21 19 24 24 N 1.30173 * 106.39745 * 179.89418 * 23 22 21 25 25 O 1.20923 * 111.60553 * 0.39157 * 24 23 22 26 26 C 1.34038 * 111.56506 * 359.74474 * 25 24 23 27 27 C 1.47965 * 111.00146 * 70.64557 * 13 12 10 28 28 H 0.97002 * 120.00392 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00499 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47080 * 60.00580 * 12 10 9 31 31 H 1.08997 * 109.47369 * 300.00432 * 12 10 9 32 32 H 1.08992 * 113.76021 * 108.09924 * 14 13 12 33 33 H 1.09007 * 113.75530 * 336.74044 * 14 13 12 34 34 H 0.96697 * 114.00114 * 178.10306 * 16 15 14 35 35 H 1.09009 * 109.46730 * 64.99594 * 17 15 14 36 36 H 1.08998 * 109.46846 * 305.00138 * 17 15 14 37 37 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 38 38 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 39 39 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 40 40 H 1.07999 * 126.80026 * 0.03790 * 23 22 21 41 41 H 1.07997 * 126.77541 * 179.97438 * 26 25 24 42 42 H 1.09004 * 113.75373 * 23.25693 * 27 13 12 43 43 H 1.08996 * 113.75807 * 251.89703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.5093 -7.2665 0.2408 15 6 2.6866 -7.6049 1.1730 16 8 3.7632 -8.2791 0.5185 17 6 2.2637 -8.2830 2.4778 18 7 3.4348 -8.4540 3.3411 19 6 3.3024 -9.0383 4.5484 20 8 2.2128 -9.4179 4.9222 21 6 4.5081 -9.2197 5.4340 22 6 4.0925 -9.8921 6.7170 23 6 3.6697 -9.2840 7.9213 24 7 3.4123 -10.2529 8.7516 25 8 3.6165 -11.3344 8.2509 26 6 4.0430 -11.2188 6.9854 27 6 2.8921 -6.0849 1.3031 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6169 -4.9209 -0.8887 31 1 0.6175 -4.9205 0.8913 32 1 1.4501 -7.9043 -0.6411 33 1 0.5551 -7.1639 0.7577 34 1 4.5170 -8.4678 1.0940 35 1 1.8300 -9.2583 2.2563 36 1 1.5247 -7.6637 2.9861 37 1 4.3063 -8.1507 3.0420 38 1 5.2454 -9.8380 4.9218 39 1 4.9436 -8.2462 5.6590 40 1 3.5763 -8.2253 8.1134 41 1 4.2975 -12.0245 6.3127 42 1 2.3424 -5.6366 2.1308 43 1 3.9376 -5.7787 1.2700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724467452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:50 Heat of formation + Delta-G solvation = -44.079005 kcal Electronic energy + Delta-G solvation = -28302.116194 eV Core-core repulsion = 23965.180567 eV Total energy + Delta-G solvation = -4336.935627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.88630 -41.79796 -40.57870 -39.69695 -36.95233 -35.90519 -35.59770 -35.27248 -33.31747 -33.12885 -31.67642 -30.17863 -28.22926 -27.25431 -26.64631 -24.17797 -23.79522 -22.76389 -21.48766 -21.03154 -20.94689 -19.91125 -19.04871 -18.66074 -18.31175 -17.88068 -17.56252 -17.07032 -16.71033 -16.60523 -16.55484 -16.20223 -15.81469 -15.63677 -15.31356 -15.14497 -14.64489 -14.51835 -14.16133 -14.09434 -13.97178 -13.68092 -13.46918 -13.39208 -13.02579 -12.94549 -12.92242 -12.46022 -12.42223 -12.14998 -12.13236 -11.80321 -11.52401 -11.39040 -11.03213 -10.94308 -10.35806 -10.32427 -10.20165 -10.03300 -9.68032 -8.48502 -5.97216 0.61166 1.24781 1.35157 1.40656 1.54677 1.62485 2.02653 2.14927 2.27250 2.45878 2.68736 2.94462 3.18253 3.26320 3.34058 3.37669 3.60058 3.79877 3.82335 3.98706 4.09085 4.21358 4.25350 4.28946 4.41808 4.46682 4.55966 4.62794 4.63030 4.71413 4.77297 4.78991 4.83148 4.99185 5.14209 5.29375 5.37618 5.40589 5.84737 6.03972 6.45561 6.57997 6.73737 7.10886 7.21570 7.32625 7.53923 8.09284 8.69103 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.002009 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.743557 B =13936.006783 C =15126.352163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.019 3.981 13 N -0.475 5.475 14 C 0.018 3.982 15 C 0.116 3.884 16 O -0.534 6.534 17 C 0.112 3.888 18 N -0.718 5.718 19 C 0.515 3.485 20 O -0.581 6.581 21 C -0.055 4.055 22 C -0.200 4.200 23 C -0.010 4.010 24 N -0.404 5.404 25 O 0.081 5.919 26 C -0.036 4.036 27 C -0.005 4.005 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.390 0.610 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.415 0.585 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.199 0.801 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -22.557 9.517 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.503 6.503 12 C -0.112 4.112 13 N -0.198 5.198 14 C -0.110 4.110 15 C 0.073 3.927 16 O -0.341 6.341 17 C -0.013 4.013 18 N -0.372 5.372 19 C 0.303 3.697 20 O -0.460 6.460 21 C -0.095 4.095 22 C -0.204 4.204 23 C -0.189 4.189 24 N -0.110 5.110 25 O 0.019 5.981 26 C -0.118 4.118 27 C -0.135 4.135 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.240 0.760 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.216 0.784 41 H 0.270 0.730 42 H 0.090 0.910 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.859 -22.568 9.924 25.590 hybrid contribution -0.007 1.681 0.143 1.687 sum 6.852 -20.887 10.067 24.178 Atomic orbital electron populations 1.69676 1.06833 1.29239 1.50417 1.26054 0.96566 1.02464 0.96350 0.84868 0.78052 0.77088 0.78318 1.19724 1.19687 1.19570 1.19678 0.92653 0.83957 1.49773 0.90318 1.41959 1.09314 1.04749 1.65176 1.20716 0.88274 0.85897 0.82301 1.90487 1.15643 1.87893 1.56314 1.22401 0.94982 0.89878 1.03956 1.68456 1.18956 1.00685 1.31668 1.24255 0.95724 0.90992 1.00062 1.22660 0.89576 0.89364 0.91067 1.86615 1.28814 1.78292 1.40417 1.21811 0.89086 1.01583 0.88854 1.45776 1.12186 1.61799 1.17459 1.21107 0.90960 0.76150 0.81522 1.90748 1.30090 1.51130 1.74039 1.20000 0.95449 1.04858 0.89184 1.21042 1.08444 0.93656 0.97287 1.25370 1.00743 1.01763 0.90996 1.73864 1.20614 0.92154 1.24391 1.84766 1.62066 1.26281 1.24936 1.26575 0.99000 0.99826 0.86370 1.24510 1.01603 0.96018 0.91345 0.91311 0.77042 0.87361 0.90229 0.87583 0.87559 0.75954 0.90000 0.90971 0.74730 0.83228 0.84955 0.78395 0.72979 0.91018 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 42.68 29.55 68.60 2.03 44.70 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 10 C 0.44 20.76 7.59 87.66 0.67 21.42 16 11 O -0.62 -33.73 15.12 -3.08 -0.05 -33.78 16 12 C 0.02 0.65 5.30 85.56 0.45 1.11 16 13 N -0.47 -14.76 5.95 -915.25 -5.44 -20.20 16 14 C 0.02 0.39 7.38 86.40 0.64 1.03 16 15 C 0.12 2.19 1.52 -10.15 -0.02 2.18 16 16 O -0.53 -9.94 13.50 -148.98 -2.01 -11.96 16 17 C 0.11 1.74 5.28 86.38 0.46 2.19 16 18 N -0.72 -7.91 5.34 -463.05 -2.47 -10.38 16 19 C 0.51 7.30 7.82 87.66 0.69 7.99 16 20 O -0.58 -14.36 16.03 -3.04 -0.05 -14.41 16 21 C -0.06 -0.35 6.28 29.10 0.18 -0.17 16 22 C -0.20 -2.57 4.82 -19.73 -0.10 -2.67 16 23 C -0.01 -0.18 12.16 85.71 1.04 0.86 16 24 N -0.40 -8.90 12.07 -59.26 -0.72 -9.62 16 25 O 0.08 1.50 11.20 71.66 0.80 2.30 16 26 C -0.04 -0.41 12.26 67.18 0.82 0.41 16 27 C -0.01 -0.15 6.16 86.40 0.53 0.38 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 30 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.08 2.27 7.69 -2.39 -0.02 2.25 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 1.77 7.75 -2.38 -0.02 1.76 16 34 H 0.39 3.64 7.61 -74.06 -0.56 3.08 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 37 H 0.42 2.11 7.31 -92.71 -0.68 1.44 16 38 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.25 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.07 1.94 7.67 -2.38 -0.02 1.92 16 43 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 Total: -1.00 -85.05 374.53 -3.48 -88.53 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.88 Total: 28.40 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.65 Total: 16.54 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -9.97 Total: -120.33 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.30 Total: -57.84 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -85.05 -3.48 -88.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724467452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.451 kcal (2) G-P(sol) polarization free energy of solvation -85.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds