Wall clock time and date at job start Tue Mar 31 2020 20:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99900 * 2 1 4 4 H 1.48494 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47173 * 300.00590 * 3 2 1 6 6 H 1.48504 * 109.46885 * 60.00056 * 3 2 1 7 7 C 1.38950 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99545 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99816 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99923 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99568 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46918 * 174.45100 * 12 10 9 14 14 C 1.47017 * 110.99639 * 300.98804 * 13 12 10 15 15 C 1.53106 * 109.25505 * 182.39259 * 14 13 12 16 16 O 1.43014 * 109.25695 * 303.15108 * 15 14 13 17 17 C 1.43013 * 113.74087 * 58.66945 * 16 15 14 18 18 C 1.47011 * 111.00089 * 64.62060 * 13 12 10 19 19 H 1.09003 * 109.54370 * 297.56661 * 18 13 12 20 20 C 1.53001 * 109.50865 * 57.67200 * 18 13 12 21 21 N 1.46502 * 109.46797 * 54.23258 * 20 18 13 22 22 C 1.34780 * 120.00150 * 174.94999 * 21 20 18 23 23 O 1.21689 * 119.99335 * 0.02562 * 22 21 20 24 24 C 1.46721 * 120.00211 * 180.02562 * 22 21 20 25 25 C 1.36344 * 126.64235 * 180.02562 * 24 22 21 26 26 N 1.33688 * 107.45042 * 180.02562 * 25 24 22 27 27 C 1.30621 * 108.99489 * 0.02562 * 26 25 24 28 28 O 1.33659 * 109.15512 * 0.02562 * 27 26 25 29 29 H 0.96999 * 120.00078 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00205 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47284 * 54.45676 * 12 10 9 32 32 H 1.08996 * 109.47411 * 294.44595 * 12 10 9 33 33 H 1.08992 * 109.50816 * 62.45836 * 14 13 12 34 34 H 1.09001 * 109.54152 * 302.34162 * 14 13 12 35 35 H 1.08998 * 109.50364 * 183.21357 * 15 14 13 36 36 H 1.09001 * 109.53967 * 63.10767 * 15 14 13 37 37 H 1.08997 * 109.50843 * 181.39847 * 17 16 15 38 38 H 1.08998 * 109.54217 * 61.28825 * 17 16 15 39 39 H 1.08999 * 109.46858 * 294.24222 * 20 18 13 40 40 H 1.08992 * 109.47303 * 174.23415 * 20 18 13 41 41 H 0.96999 * 120.00053 * 354.95833 * 21 20 18 42 42 H 1.07998 * 126.27088 * 359.97438 * 25 24 22 43 43 H 1.08004 * 125.41640 * 179.73792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1928 -5.9763 -0.1340 14 6 2.9703 -5.8591 -1.3763 15 6 3.9016 -7.0676 -1.5050 16 8 4.7383 -7.1436 -0.3476 17 6 4.0139 -7.2589 0.8800 18 6 3.0838 -6.0526 1.0329 19 1 3.6778 -5.1410 1.0983 20 6 2.2478 -6.2098 2.3046 21 7 1.3514 -7.3596 2.1606 22 6 0.5889 -7.7540 3.1997 23 8 0.6448 -7.1546 4.2573 24 6 -0.3084 -8.9058 3.0556 25 6 -1.1348 -9.4180 4.0115 26 7 -1.7745 -10.4604 3.4717 27 6 -1.3787 -10.6085 2.2357 28 8 -0.4747 -9.6668 1.9489 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.5445 -4.8791 -0.8359 32 1 0.6943 -4.9647 0.9358 33 1 3.5624 -4.9445 -1.3502 34 1 2.2923 -5.8297 -2.2293 35 1 4.5207 -6.9567 -2.3952 36 1 3.3081 -7.9783 -1.5854 37 1 4.7143 -7.2865 1.7147 38 1 3.4233 -8.1750 0.8702 39 1 1.6581 -5.3074 2.4656 40 1 2.9088 -6.3689 3.1565 41 1 1.3067 -7.8371 1.3175 42 1 -1.2506 -9.0498 5.0201 43 1 -1.7233 -11.3734 1.5555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724768965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:04 Heat of formation + Delta-G solvation = -69.053970 kcal Electronic energy + Delta-G solvation = -30086.451504 eV Core-core repulsion = 25748.432881 eV Total energy + Delta-G solvation = -4338.018623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.69777 -40.39638 -39.29672 -38.01255 -35.90643 -35.24732 -34.52367 -33.72558 -31.66510 -31.43002 -30.51923 -29.03038 -26.82837 -25.52159 -24.17740 -23.78208 -23.00887 -22.39260 -21.04146 -20.08010 -19.24144 -18.79508 -17.93865 -17.14938 -17.11954 -16.55324 -16.39560 -16.13163 -15.80961 -15.17111 -14.78577 -14.76091 -14.74132 -14.54335 -14.13616 -14.09307 -13.83043 -13.81309 -13.52593 -13.22735 -12.75497 -12.05879 -11.95749 -11.81639 -11.64850 -11.60993 -11.28676 -11.19335 -11.04807 -10.76616 -10.47694 -10.42895 -10.42412 -10.31943 -9.66890 -9.57667 -9.46856 -9.35967 -9.05991 -8.09656 -7.64269 -6.54086 -3.95698 0.57033 2.16065 2.17755 2.92224 3.03922 3.07920 3.20172 3.26696 3.69794 3.83584 3.90762 4.02644 4.07968 4.61887 4.65491 4.80256 4.87495 4.92230 5.09234 5.19111 5.21145 5.27609 5.29160 5.41939 5.47184 5.59073 5.70514 5.75870 5.78847 5.87384 5.92454 5.99983 6.04484 6.15369 6.38811 6.54009 7.04231 7.08731 7.12211 7.24042 7.38254 7.43496 7.90439 7.91611 8.44717 9.03738 9.38450 9.87754 10.62263 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.003172 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.496859 B = 8825.238619 C =10255.023020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.403 3.597 11 O -0.593 6.593 12 C 0.035 3.965 13 N -0.508 5.508 14 C -0.001 4.001 15 C 0.068 3.932 16 O -0.381 6.381 17 C 0.075 3.925 18 C 0.016 3.984 19 H 0.114 0.886 20 C 0.127 3.873 21 N -0.701 5.701 22 C 0.602 3.398 23 O -0.518 6.518 24 C -0.102 4.102 25 C 0.047 3.953 26 N -0.495 5.495 27 C 0.197 3.803 28 O -0.189 6.189 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.413 0.587 42 H 0.197 0.803 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 -19.606 0.276 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.481 6.481 12 C -0.096 4.096 13 N -0.232 5.232 14 C -0.129 4.129 15 C -0.009 4.009 16 O -0.300 6.300 17 C -0.002 4.002 18 C -0.093 4.093 19 H 0.132 0.868 20 C 0.003 3.997 21 N -0.352 5.352 22 C 0.386 3.614 23 O -0.396 6.396 24 C -0.157 4.157 25 C -0.095 4.095 26 N -0.224 5.224 27 C -0.028 4.028 28 O -0.075 6.075 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.249 0.751 42 H 0.214 0.786 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.084 -19.800 1.195 19.865 hybrid contribution 0.059 1.798 -0.795 1.967 sum -1.025 -18.002 0.400 18.035 Atomic orbital electron populations 1.69616 1.06014 1.28370 1.49574 1.25312 0.95629 0.99932 0.96844 0.85796 0.79724 0.80983 0.77843 1.19170 1.20649 1.20593 1.19767 0.93436 0.82267 1.47872 0.87799 1.42058 1.09340 1.04976 1.62197 1.20926 0.88791 0.85845 0.85578 1.90412 1.13756 1.86714 1.57171 1.22118 0.95459 0.88409 1.03632 1.62720 1.17535 1.40752 1.02238 1.23040 0.97246 1.00640 0.91970 1.22632 0.92913 0.96913 0.88429 1.87983 1.33186 1.94375 1.14415 1.22612 0.94412 0.95921 0.87285 1.22921 0.94672 1.01956 0.89748 0.86820 1.21537 0.92188 0.88404 0.97547 1.45889 1.41679 1.32767 1.14892 1.16394 0.79306 0.81143 0.84572 1.90924 1.66873 1.54430 1.27371 1.23310 1.06618 0.99068 0.86729 1.23614 0.92852 0.91985 1.01090 1.70456 1.25878 1.18223 1.07804 1.28412 0.87886 0.92389 0.94151 1.84521 1.49916 1.35595 1.37422 0.91693 0.77379 0.89164 0.89047 0.89202 0.90536 0.88877 0.93200 0.88750 0.93278 0.90408 0.90144 0.75069 0.78632 0.72878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.21 5.29 -10.96 -0.06 -13.27 16 10 C 0.40 8.63 7.15 -10.98 -0.08 8.55 16 11 O -0.59 -14.25 11.16 5.55 0.06 -14.19 16 12 C 0.04 0.57 5.55 -4.97 -0.03 0.54 16 13 N -0.51 -7.25 4.08 -227.77 -0.93 -8.18 16 14 C 0.00 -0.02 5.25 -3.71 -0.02 -0.04 16 15 C 0.07 0.86 7.01 37.21 0.26 1.12 16 16 O -0.38 -5.56 10.83 -35.23 -0.38 -5.94 16 17 C 0.08 0.95 6.21 37.21 0.23 1.18 16 18 C 0.02 0.23 1.91 -67.60 -0.13 0.10 16 19 H 0.11 2.11 5.62 -51.93 -0.29 1.81 16 20 C 0.13 1.70 4.67 -4.04 -0.02 1.68 16 21 N -0.70 -8.26 5.04 -61.61 -0.31 -8.57 16 22 C 0.60 7.80 7.79 -12.83 -0.10 7.70 16 23 O -0.52 -8.30 16.89 5.20 0.09 -8.21 16 24 C -0.10 -1.13 7.18 -36.84 -0.26 -1.40 16 25 C 0.05 0.51 11.66 -17.43 -0.20 0.30 16 26 N -0.50 -4.99 11.26 -14.67 -0.17 -5.15 16 27 C 0.20 1.41 13.21 52.25 0.69 2.10 16 28 O -0.19 -1.74 10.57 4.45 0.05 -1.69 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.41 6.14 -51.93 -0.32 1.09 16 33 H 0.09 1.70 5.54 -51.93 -0.29 1.42 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.54 7.27 -51.93 -0.38 0.17 16 39 H 0.08 1.20 6.60 -51.93 -0.34 0.86 16 40 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 41 H 0.41 4.43 7.22 -40.82 -0.29 4.14 16 42 H 0.20 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.26 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -32.19 358.53 -5.57 -37.76 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.13 Total: 15.38 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 0.10 Total: 14.14 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.74 Total: -58.17 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.18 Total: -30.04 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -5.57 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724768965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.293 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds