Wall clock time and date at job start Tue Mar 31 2020 20:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48493 * 109.47398 * 270.00368 * 3 2 1 5 5 H 1.48510 * 109.46731 * 30.00568 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00335 * 3 2 1 7 7 C 1.38812 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00239 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47178 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.55843 * 59.87532 * 11 10 9 13 13 C 1.53294 * 109.51077 * 180.02562 * 11 10 9 14 14 N 1.47159 * 108.38436 * 172.22281 * 13 11 10 15 15 C 1.34777 * 120.98119 * 129.44017 * 14 13 11 16 16 O 1.21284 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99798 * 180.02562 * 15 14 13 18 18 O 1.42910 * 109.46931 * 179.97438 * 17 15 14 19 19 C 1.35943 * 116.99948 * 179.97438 * 18 17 15 20 20 C 1.38709 * 120.03088 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.97062 * 179.97438 * 20 19 18 22 22 C 1.38455 * 120.03152 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.97018 * 179.70348 * 22 21 20 24 24 C 1.38451 * 120.06142 * 359.97438 * 22 21 20 25 25 C 1.38152 * 120.02792 * 0.02562 * 24 22 21 26 26 C 1.47147 * 118.03544 * 309.71732 * 14 13 11 27 27 C 1.52879 * 108.61031 * 50.22287 * 26 14 13 28 28 O 1.42957 * 109.30079 * 307.93824 * 27 26 14 29 29 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00144 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46706 * 60.00669 * 10 9 7 32 32 H 1.08994 * 109.47377 * 300.00340 * 10 9 7 33 33 H 1.08998 * 109.68477 * 52.50512 * 13 11 10 34 34 H 1.09003 * 109.68264 * 291.94447 * 13 11 10 35 35 H 1.09001 * 109.47640 * 60.00163 * 17 15 14 36 36 H 1.09003 * 109.47193 * 299.99620 * 17 15 14 37 37 H 1.08001 * 120.01187 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.98588 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99056 * 180.02562 * 24 22 21 40 40 H 1.08006 * 120.01651 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.68074 * 170.00828 * 26 14 13 42 42 H 1.09002 * 109.68267 * 290.56056 * 26 14 13 43 43 H 1.09002 * 109.58498 * 187.91778 * 27 26 14 44 44 H 1.09009 * 109.40450 * 67.84202 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8809 -1.6179 0.8873 13 6 6.3838 -3.5184 -0.0017 14 7 7.8139 -3.2274 -0.1907 15 6 8.7429 -3.7480 0.6354 16 8 8.4049 -4.4685 1.5507 17 6 10.2014 -3.4349 0.4218 18 8 10.9818 -4.0981 1.4185 19 6 12.3285 -3.9193 1.3679 20 6 13.1461 -4.5334 2.3051 21 6 14.5144 -4.3513 2.2522 22 6 15.0699 -3.5557 1.2645 23 9 16.4077 -3.3736 1.2175 24 6 14.2550 -2.9421 0.3283 25 6 12.8863 -3.1225 0.3789 26 6 8.1991 -2.3463 -1.3044 27 6 7.3437 -1.0807 -1.2436 28 8 5.9636 -1.4462 -1.1708 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.8486 -3.0426 -0.8909 32 1 3.8492 -3.0423 0.8891 33 1 6.0267 -4.1486 -0.8162 34 1 6.2356 -4.0286 0.9501 35 1 10.3567 -2.3586 0.4960 36 1 10.5058 -3.7787 -0.5668 37 1 12.7130 -5.1537 3.0759 38 1 15.1512 -4.8290 2.9820 39 1 14.6896 -2.3220 -0.4419 40 1 12.2509 -2.6440 -0.3517 41 1 9.2525 -2.0807 -1.2150 42 1 8.0279 -2.8564 -2.2523 43 1 7.5148 -0.4807 -2.1374 44 1 7.6143 -0.5027 -0.3599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724826302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:31 Heat of formation + Delta-G solvation = -101.534757 kcal Electronic energy + Delta-G solvation = -28354.634414 eV Core-core repulsion = 23995.287357 eV Total energy + Delta-G solvation = -4359.347057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.26707 -41.05982 -40.22664 -38.62977 -37.48367 -35.36419 -34.63814 -32.44126 -31.86412 -30.87619 -30.35167 -29.10177 -28.03722 -25.65479 -23.76069 -23.62375 -22.82783 -22.09277 -21.09118 -19.64308 -19.09090 -17.90894 -17.82757 -17.49620 -16.95829 -16.86633 -16.63782 -16.08087 -15.98591 -15.41279 -15.24691 -15.15729 -14.73561 -14.59299 -14.34963 -14.18590 -13.80008 -13.60570 -13.52016 -13.20692 -12.96711 -12.82774 -12.78178 -12.55750 -12.34914 -11.92838 -11.48739 -11.45202 -11.31356 -11.17588 -10.86664 -10.63786 -10.25298 -10.09909 -10.06534 -9.75336 -9.58839 -8.91155 -8.82849 -8.64611 -7.23293 -5.76064 -3.11519 0.59354 0.67565 1.96137 2.14743 2.94413 3.02259 3.38691 3.42654 3.45992 3.67524 3.77800 3.87720 4.13319 4.19281 4.33189 4.42793 4.43797 4.57455 4.58467 4.60695 4.75057 4.79440 4.86431 4.99224 5.06669 5.20879 5.31342 5.42690 5.45523 5.52675 5.55182 5.62115 5.63187 5.64579 5.71382 5.86411 6.00000 6.14000 6.40912 6.53797 6.71638 6.91451 7.19706 7.71088 7.98951 8.42507 9.21660 9.93853 10.13891 11.42163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.001911 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.083458 B =14651.818536 C =15080.672134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.168 3.832 11 C 0.069 3.931 12 H 0.064 0.936 13 C 0.088 3.912 14 N -0.611 5.611 15 C 0.519 3.481 16 O -0.512 6.512 17 C 0.042 3.958 18 O -0.285 6.285 19 C 0.122 3.878 20 C -0.118 4.118 21 C -0.111 4.111 22 C 0.058 3.942 23 F -0.141 7.141 24 C -0.111 4.111 25 C -0.184 4.184 26 C 0.069 3.931 27 C 0.043 3.957 28 O -0.359 6.359 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.319 -6.879 -1.651 33.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.395 5.395 10 C 0.040 3.960 11 C 0.010 3.990 12 H 0.082 0.918 13 C -0.034 4.034 14 N -0.347 5.347 15 C 0.305 3.695 16 O -0.386 6.386 17 C -0.037 4.037 18 O -0.197 6.197 19 C 0.077 3.923 20 C -0.137 4.137 21 C -0.130 4.130 22 C 0.039 3.961 23 F -0.120 7.120 24 C -0.130 4.130 25 C -0.202 4.202 26 C -0.054 4.054 27 C -0.035 4.035 28 O -0.277 6.277 29 H 0.069 0.931 30 H 0.198 0.802 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 31.690 -7.430 -1.147 32.570 hybrid contribution 1.107 1.471 -0.184 1.850 sum 32.797 -5.959 -1.331 33.360 Atomic orbital electron populations 1.69705 1.05081 1.25829 1.57542 1.24661 0.95239 0.97245 1.01981 0.86495 0.79049 0.84863 0.77783 1.21009 1.21833 1.20496 1.19050 0.80462 0.94820 1.43078 0.89134 1.42536 1.03955 1.01970 1.91086 1.20609 0.85271 0.90358 0.99768 1.22897 0.97039 0.90734 0.88331 0.91775 1.22386 0.77966 0.98290 1.04804 1.48049 1.07240 1.49182 1.30248 1.19900 0.86606 0.80770 0.82242 1.90775 1.81398 1.36025 1.30416 1.22554 0.89826 0.98588 0.92717 1.86196 1.14500 1.68121 1.50888 1.19078 0.82735 0.95479 0.95049 1.20334 0.91509 1.02114 0.99749 1.20998 0.94915 0.98730 0.98344 1.17601 0.77541 1.02083 0.98903 1.91503 1.30093 1.94170 1.96217 1.20947 0.93064 1.00082 0.98886 1.21128 0.95512 1.02926 1.00676 1.22498 0.99885 0.92555 0.90476 1.22867 0.83012 0.94547 1.03042 1.88166 1.23357 1.73439 1.42713 0.93064 0.80235 0.94376 0.93703 0.89779 0.87615 0.88725 0.88660 0.83745 0.83840 0.84275 0.84429 0.89400 0.89643 0.87428 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.38 27.74 -169.99 -4.71 17.66 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 7 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.99 5.30 -59.91 -0.32 -18.31 16 10 C 0.17 3.17 5.95 -4.04 -0.02 3.15 16 11 C 0.07 1.03 2.86 -26.58 -0.08 0.96 16 12 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.09 1.10 5.93 -3.53 -0.02 1.08 16 14 N -0.61 -6.38 3.03 -172.53 -0.52 -6.90 16 15 C 0.52 5.91 7.79 -10.99 -0.09 5.82 16 16 O -0.51 -8.11 15.97 -14.36 -0.23 -8.34 16 17 C 0.04 0.31 3.59 36.00 0.13 0.44 16 18 O -0.28 -2.87 9.67 -39.47 -0.38 -3.25 16 19 C 0.12 1.00 6.69 -39.23 -0.26 0.74 16 20 C -0.12 -0.89 9.98 -39.44 -0.39 -1.28 16 21 C -0.11 -0.75 10.02 -39.54 -0.40 -1.14 16 22 C 0.06 0.43 7.30 -39.42 -0.29 0.15 16 23 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 24 C -0.11 -0.70 10.02 -39.53 -0.40 -1.09 16 25 C -0.18 -1.14 9.04 -39.44 -0.36 -1.50 16 26 C 0.07 0.50 6.51 -3.75 -0.02 0.47 16 27 C 0.04 0.42 6.97 37.10 0.26 0.67 16 28 O -0.36 -5.35 10.14 -35.23 -0.36 -5.71 16 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.36 8.68 5.41 -40.82 -0.22 8.46 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.41 7.08 -51.93 -0.37 1.04 16 35 H 0.09 0.48 7.17 -51.93 -0.37 0.10 16 36 H 0.10 0.45 7.54 -51.93 -0.39 0.06 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.14 0.50 6.30 -52.48 -0.33 0.17 16 41 H 0.09 0.32 6.05 -51.93 -0.31 0.00 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -36.57 369.53 -8.15 -44.71 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.82 Total: 3.02 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.19 Total: 1.38 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.06 Total: -53.90 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.97 Total: -17.30 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.57 -8.15 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724826302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.823 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds