Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48493 * 109.47398 * 270.00368 * 3 2 1 5 5 H 1.48510 * 109.46731 * 30.00568 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00335 * 3 2 1 7 7 C 1.38812 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00239 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47178 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.55843 * 59.87532 * 11 10 9 13 13 C 1.53294 * 109.51077 * 180.02562 * 11 10 9 14 14 N 1.47159 * 108.38436 * 172.22281 * 13 11 10 15 15 C 1.34777 * 120.98119 * 129.44017 * 14 13 11 16 16 O 1.21284 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.50693 * 119.99798 * 180.02562 * 15 14 13 18 18 O 1.42910 * 109.46931 * 179.97438 * 17 15 14 19 19 C 1.35943 * 116.99948 * 179.97438 * 18 17 15 20 20 C 1.38709 * 120.03088 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.97062 * 179.97438 * 20 19 18 22 22 C 1.38455 * 120.03152 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.97018 * 179.70348 * 22 21 20 24 24 C 1.38451 * 120.06142 * 359.97438 * 22 21 20 25 25 C 1.38152 * 120.02792 * 0.02562 * 24 22 21 26 26 C 1.47147 * 118.03544 * 309.71732 * 14 13 11 27 27 C 1.52879 * 108.61031 * 50.22287 * 26 14 13 28 28 O 1.42957 * 109.30079 * 307.93824 * 27 26 14 29 29 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00144 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46706 * 60.00669 * 10 9 7 32 32 H 1.08994 * 109.47377 * 300.00340 * 10 9 7 33 33 H 1.08998 * 109.68477 * 52.50512 * 13 11 10 34 34 H 1.09003 * 109.68264 * 291.94447 * 13 11 10 35 35 H 1.09001 * 109.47640 * 60.00163 * 17 15 14 36 36 H 1.09003 * 109.47193 * 299.99620 * 17 15 14 37 37 H 1.08001 * 120.01187 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.98588 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99056 * 180.02562 * 24 22 21 40 40 H 1.08006 * 120.01651 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.68074 * 170.00828 * 26 14 13 42 42 H 1.09002 * 109.68267 * 290.56056 * 26 14 13 43 43 H 1.09002 * 109.58498 * 187.91778 * 27 26 14 44 44 H 1.09009 * 109.40450 * 67.84202 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8809 -1.6179 0.8873 13 6 6.3838 -3.5184 -0.0017 14 7 7.8139 -3.2274 -0.1907 15 6 8.7429 -3.7480 0.6354 16 8 8.4049 -4.4685 1.5507 17 6 10.2014 -3.4349 0.4218 18 8 10.9818 -4.0981 1.4185 19 6 12.3285 -3.9193 1.3679 20 6 13.1461 -4.5334 2.3051 21 6 14.5144 -4.3513 2.2522 22 6 15.0699 -3.5557 1.2645 23 9 16.4077 -3.3736 1.2175 24 6 14.2550 -2.9421 0.3283 25 6 12.8863 -3.1225 0.3789 26 6 8.1991 -2.3463 -1.3044 27 6 7.3437 -1.0807 -1.2436 28 8 5.9636 -1.4462 -1.1708 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.8486 -3.0426 -0.8909 32 1 3.8492 -3.0423 0.8891 33 1 6.0267 -4.1486 -0.8162 34 1 6.2356 -4.0286 0.9501 35 1 10.3567 -2.3586 0.4960 36 1 10.5058 -3.7787 -0.5668 37 1 12.7130 -5.1537 3.0759 38 1 15.1512 -4.8290 2.9820 39 1 14.6896 -2.3220 -0.4419 40 1 12.2509 -2.6440 -0.3517 41 1 9.2525 -2.0807 -1.2150 42 1 8.0279 -2.8564 -2.2523 43 1 7.5148 -0.4807 -2.1374 44 1 7.6143 -0.5027 -0.3599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724826302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -126.984260 kcal Electronic energy + Delta-G solvation = -28355.737987 eV Core-core repulsion = 23995.287357 eV Total energy + Delta-G solvation = -4360.450630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.82976 -41.78101 -40.93063 -39.55912 -38.08999 -36.84300 -35.84694 -34.04894 -32.53900 -32.25071 -31.01189 -29.77841 -29.09684 -26.93887 -24.74996 -24.30335 -23.75808 -23.18285 -22.38774 -20.42973 -19.78769 -19.61280 -18.45687 -18.32695 -17.73758 -17.57375 -17.48024 -17.01325 -16.60728 -16.53189 -16.18716 -16.10882 -15.72843 -15.61880 -15.44477 -14.96185 -14.73606 -14.58077 -14.44846 -14.25234 -14.08031 -14.01213 -13.73902 -13.40516 -13.34260 -13.10447 -12.85968 -12.63390 -12.32285 -12.04774 -11.99567 -11.92819 -11.84636 -11.68294 -11.24625 -10.99864 -10.92545 -10.20471 -9.72051 -9.31574 -9.17445 -8.02925 -5.36619 0.13919 0.16656 1.26665 1.35362 1.37391 1.41909 1.48957 2.31901 2.48753 2.53989 2.71335 3.19870 3.28653 3.33257 3.40197 3.68643 3.77731 3.84409 3.88870 3.91917 4.01252 4.03381 4.06831 4.15434 4.27247 4.30324 4.33952 4.46164 4.54329 4.65958 4.75265 4.87780 4.89111 4.92238 5.05609 5.09533 5.13292 5.15510 5.18582 5.64617 5.73583 6.09405 6.17990 6.22565 6.27716 6.90637 7.06778 7.81895 8.02183 9.18338 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.001911 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.083458 B =14651.818536 C =15080.672134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.237 4.237 8 H 0.058 0.942 9 N -0.752 5.752 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.057 0.943 13 C 0.095 3.905 14 N -0.608 5.608 15 C 0.513 3.487 16 O -0.569 6.569 17 C 0.042 3.958 18 O -0.316 6.316 19 C 0.108 3.892 20 C -0.134 4.134 21 C -0.113 4.113 22 C 0.039 3.961 23 F -0.150 7.150 24 C -0.110 4.110 25 C -0.176 4.176 26 C 0.069 3.931 27 C 0.032 3.968 28 O -0.388 6.388 29 H 0.258 0.742 30 H 0.368 0.632 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.787 -5.351 -3.265 36.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.368 4.368 8 H 0.076 0.924 9 N -0.398 5.398 10 C 0.034 3.966 11 C 0.027 3.973 12 H 0.075 0.925 13 C -0.029 4.029 14 N -0.343 5.343 15 C 0.302 3.698 16 O -0.448 6.448 17 C -0.035 4.035 18 O -0.229 6.229 19 C 0.062 3.938 20 C -0.153 4.153 21 C -0.132 4.132 22 C 0.020 3.980 23 F -0.129 7.129 24 C -0.128 4.128 25 C -0.195 4.195 26 C -0.052 4.052 27 C -0.045 4.045 28 O -0.307 6.307 29 H 0.067 0.933 30 H 0.201 0.799 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.151 0.849 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 35.228 -5.910 -2.791 35.829 hybrid contribution 0.036 0.908 0.287 0.953 sum 35.263 -5.002 -2.504 35.704 Atomic orbital electron populations 1.69888 1.07088 1.26740 1.59580 1.25526 0.96175 1.01374 1.02529 0.85333 0.78375 0.79423 0.78156 1.20226 1.22155 1.18036 1.19054 0.82563 0.93659 1.41512 0.92373 1.42518 1.02430 1.03942 1.90930 1.20761 0.88024 0.88308 0.99490 1.22479 0.94281 0.92043 0.88530 0.92456 1.22090 0.79716 0.96730 1.04353 1.48118 1.05997 1.49306 1.30903 1.20686 0.88356 0.79624 0.81120 1.90753 1.82505 1.38656 1.32836 1.22751 0.86544 1.00393 0.93803 1.86152 1.15493 1.69061 1.52172 1.19264 0.82097 0.96415 0.95990 1.20470 0.91924 1.02662 1.00216 1.21136 0.94814 0.98626 0.98593 1.17889 0.77389 1.02927 0.99792 1.91479 1.30792 1.94308 1.96327 1.21240 0.93122 0.99676 0.98798 1.21427 0.95716 1.01939 1.00370 1.22776 1.01993 0.90788 0.89668 1.23254 0.80621 0.96103 1.04474 1.88102 1.26972 1.73560 1.42076 0.93286 0.79888 0.94590 0.93661 0.89158 0.89137 0.85383 0.84966 0.83891 0.82587 0.82103 0.81134 0.84672 0.88349 0.84851 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.96 46.12 27.74 68.60 1.90 48.02 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 7 C -0.24 -13.80 10.47 84.03 0.88 -12.92 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 9 N -0.75 -35.98 5.30 -343.46 -1.82 -37.80 16 10 C 0.16 6.11 5.95 86.38 0.51 6.62 16 11 C 0.09 2.48 2.86 30.69 0.09 2.57 16 12 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.09 2.28 5.93 86.35 0.51 2.79 16 14 N -0.61 -11.03 3.03 -818.14 -2.48 -13.51 16 15 C 0.51 10.58 7.79 87.65 0.68 11.26 16 16 O -0.57 -18.02 15.97 15.99 0.26 -17.76 16 17 C 0.04 0.46 3.59 71.23 0.26 0.72 16 18 O -0.32 -5.70 9.67 -73.87 -0.71 -6.42 16 19 C 0.11 1.52 6.69 22.49 0.15 1.67 16 20 C -0.13 -1.90 9.98 22.36 0.22 -1.68 16 21 C -0.11 -1.41 10.02 22.30 0.22 -1.18 16 22 C 0.04 0.52 7.30 22.37 0.16 0.68 16 23 F -0.15 -2.34 17.27 44.97 0.78 -1.56 16 24 C -0.11 -1.03 10.02 22.30 0.22 -0.81 16 25 C -0.18 -1.49 9.04 22.36 0.20 -1.29 16 26 C 0.07 0.66 6.51 86.22 0.56 1.22 16 27 C 0.03 0.49 6.97 71.94 0.50 0.99 16 28 O -0.39 -10.66 10.14 -148.98 -1.51 -12.17 16 29 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.37 16.97 5.41 -92.71 -0.50 16.47 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.46 7.08 -2.39 -0.02 2.45 16 35 H 0.13 0.54 7.17 -2.39 -0.02 0.52 16 36 H 0.13 0.47 7.54 -2.39 -0.02 0.45 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 0.18 6.30 -2.91 -0.02 0.17 16 41 H 0.14 0.03 6.05 -2.39 -0.01 0.02 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -83.79 369.53 2.84 -80.95 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.48 Total: 16.28 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.65 Total: 7.25 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.99 Total: -114.59 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.97 Total: -36.35 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.02 kcal Total: -83.79 2.84 -80.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724826302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.036 kcal (2) G-P(sol) polarization free energy of solvation -83.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds