Wall clock time and date at job start Tue Mar 31 2020 20:32:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31417 * 1
3 3 Si 1.86800 * 119.99547 * 2 1
4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1
5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1
6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1
7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1
9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1
10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2
11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7
13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9
14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10
15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12
16 16 N 1.46493 * 114.34506 * 272.36508 * 15 14 13
17 17 C 1.34784 * 119.99875 * 248.92376 * 16 15 14
18 18 O 1.21274 * 120.00044 * 0.02562 * 17 16 15
19 19 C 1.50700 * 119.99706 * 179.97438 * 17 16 15
20 20 C 1.53238 * 109.62408 * 299.63258 * 19 17 16
21 21 C 1.50628 * 109.13516 * 184.83466 * 20 19 17
22 22 O 1.21229 * 119.26722 * 208.95552 * 21 20 19
23 23 N 1.34138 * 121.37107 * 28.76746 * 21 20 19
24 24 C 1.34143 * 122.58728 * 359.64192 * 23 21 20
25 25 O 1.21228 * 119.36070 * 180.54020 * 24 23 21
26 26 C 1.50587 * 121.27848 * 0.51865 * 24 23 21
27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10
28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3
29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2
30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9
31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9
32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12
33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12
34 34 H 1.08998 * 114.16723 * 139.66940 * 15 14 13
35 35 H 0.96998 * 120.00117 * 68.92512 * 16 15 14
36 36 H 1.08999 * 109.62115 * 60.00288 * 19 17 16
37 37 H 1.08998 * 109.52764 * 304.57085 * 20 19 17
38 38 H 1.09007 * 109.52102 * 64.75713 * 20 19 17
39 39 H 0.96995 * 118.70796 * 179.61368 * 23 21 20
40 40 H 1.09008 * 109.52080 * 211.02138 * 26 24 23
41 41 H 1.09002 * 109.52313 * 90.83652 * 26 24 23
42 42 H 1.08994 * 113.48196 * 253.46980 * 27 13 12
43 43 H 1.09003 * 113.47819 * 23.94188 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2480 1.6178 0.0000
4 1 2.4956 2.0465 -1.4000
5 1 1.4454 2.6527 0.7000
6 1 3.5456 1.4403 0.7001
7 6 2.0089 -1.2032 -0.0005
8 1 3.0889 -1.2033 -0.0001
9 7 1.3234 -2.3906 -0.0005
10 6 1.9974 -3.5578 -0.0005
11 8 3.2104 -3.5578 -0.0010
12 6 1.2439 -4.8629 -0.0011
13 7 2.1986 -5.9794 -0.0016
14 6 2.4686 -6.4434 -1.3753
15 6 2.4122 -7.8815 -0.8411
16 7 3.6903 -8.3887 -0.3361
17 6 4.3377 -9.3660 -1.0013
18 8 3.8623 -9.8251 -2.0181
19 6 5.6529 -9.8873 -0.4820
20 6 6.6750 -8.7467 -0.4320
21 6 8.0150 -9.3019 -0.0258
22 8 8.7946 -8.5912 0.5714
23 7 8.3614 -10.5667 -0.3080
24 6 7.5456 -11.4119 -0.9558
25 8 7.9148 -12.5462 -1.1718
26 6 6.1798 -10.9791 -1.4194
27 6 1.5115 -7.2624 0.2370
28 1 -0.4850 0.8401 -0.0004
29 1 0.3535 -2.3906 0.0002
30 1 0.6170 -4.9209 0.8886
31 1 0.6176 -4.9205 -0.8913
32 1 1.6687 -6.2094 -2.0777
33 1 3.4527 -6.1559 -1.7451
34 1 1.9012 -8.5828 -1.5007
35 1 4.0708 -8.0212 0.4770
36 1 5.5145 -10.2988 0.5178
37 1 6.7570 -8.2875 -1.4172
38 1 6.3521 -7.9997 0.2932
39 1 9.2364 -10.8825 -0.0332
40 1 5.5019 -11.8325 -1.4021
41 1 6.2470 -10.5867 -2.4342
42 1 1.6845 -7.6690 1.2333
43 1 0.4561 -7.2470 -0.0353
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732111393.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:32:56
Heat of formation + Delta-G solvation = -101.711572 kcal
Electronic energy + Delta-G solvation = -28570.135006 eV
Core-core repulsion = 24230.700244 eV
Total energy + Delta-G solvation = -4339.434763 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.147 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.04875 -40.77471 -39.39584 -39.27096 -37.77682 -35.89903 -34.45403 -34.12021
-33.79432 -31.29234 -29.99160 -29.28396 -26.26903 -26.01837 -25.17157 -23.70147
-23.53597 -21.08747 -20.02605 -19.86340 -19.30029 -18.26569 -18.03333 -17.83826
-17.47851 -16.52090 -16.28015 -16.09240 -15.71420 -15.49123 -15.17832 -15.13143
-14.83628 -14.74699 -14.51246 -14.15525 -14.00575 -13.74379 -13.36146 -13.19358
-12.92184 -12.71606 -12.15476 -12.03333 -11.89661 -11.63697 -11.52203 -11.32208
-11.24706 -11.08887 -10.79872 -10.72836 -10.68712 -10.41404 -10.24188 -10.17726
-9.52623 -9.32842 -8.91285 -8.26230 -7.98895 -6.44229 -3.85095 1.00965
2.09439 2.23737 2.29107 2.69297 3.15883 3.24793 3.30586 3.41946
3.78556 3.85705 3.90526 3.95149 4.04524 4.18319 4.31006 4.38331
4.56494 4.74044 4.81500 4.93252 4.99931 5.14012 5.18198 5.28516
5.29415 5.32364 5.45687 5.52030 5.55722 5.58550 5.64523 5.89380
6.19897 6.24718 6.32183 6.41915 6.86320 7.00201 7.16514 7.32442
7.52744 7.80246 8.03244 8.59043 9.15887 9.51731 10.03674 10.73536
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.017387 B = 0.002122 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1609.987409 B =13192.221653 C =14476.464737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.022 3.978
3 Si 0.930 3.070
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.269 1.269
7 C -0.298 4.298
8 H 0.103 0.897
9 N -0.566 5.566
10 C 0.446 3.554
11 O -0.576 6.576
12 C 0.008 3.992
13 N -0.440 5.440
14 C -0.008 4.008
15 C 0.115 3.885
16 N -0.695 5.695
17 C 0.526 3.474
18 O -0.532 6.532
19 C -0.113 4.113
20 C -0.138 4.138
21 C 0.529 3.471
22 O -0.492 6.492
23 N -0.677 5.677
24 C 0.528 3.472
25 O -0.500 6.500
26 C -0.123 4.123
27 C -0.014 4.014
28 H 0.271 0.729
29 H 0.391 0.609
30 H 0.089 0.911
31 H 0.061 0.939
32 H 0.078 0.922
33 H 0.091 0.909
34 H 0.112 0.888
35 H 0.411 0.589
36 H 0.116 0.884
37 H 0.122 0.878
38 H 0.127 0.873
39 H 0.413 0.587
40 H 0.123 0.877
41 H 0.123 0.877
42 H 0.090 0.910
43 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.277 -21.641 -0.694 22.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.180 4.180
3 Si 0.757 3.243
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.428 4.428
8 H 0.120 0.880
9 N -0.204 5.204
10 C 0.231 3.769
11 O -0.459 6.459
12 C -0.124 4.124
13 N -0.162 5.162
14 C -0.138 4.138
15 C 0.008 3.992
16 N -0.345 5.345
17 C 0.312 3.688
18 O -0.409 6.409
19 C -0.134 4.134
20 C -0.178 4.178
21 C 0.317 3.683
22 O -0.364 6.364
23 N -0.343 5.343
24 C 0.317 3.683
25 O -0.372 6.372
26 C -0.163 4.163
27 C -0.144 4.144
28 H 0.081 0.919
29 H 0.224 0.776
30 H 0.107 0.893
31 H 0.079 0.921
32 H 0.096 0.904
33 H 0.109 0.891
34 H 0.130 0.870
35 H 0.247 0.753
36 H 0.134 0.866
37 H 0.140 0.860
38 H 0.145 0.855
39 H 0.253 0.747
40 H 0.142 0.858
41 H 0.141 0.859
42 H 0.108 0.892
43 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 6.544 -21.676 -0.828 22.658
hybrid contribution -0.504 0.989 0.063 1.112
sum 6.039 -20.688 -0.765 21.565
Atomic orbital electron populations
1.69610 1.05924 1.28148 1.50731 1.25256 0.95644 0.99720 0.97371
0.85863 0.79258 0.80821 0.78390 1.20423 1.20924 1.19402 1.19683
0.93332 0.82209 1.47541 0.87965 1.41879 1.09140 1.04621 1.64719
1.19646 0.88388 0.84364 0.84546 1.90522 1.13625 1.86958 1.54808
1.22509 0.94701 0.93082 1.02143 1.68834 1.30520 1.00102 1.16753
1.24368 1.03782 0.93229 0.92437 1.22021 0.84784 0.95412 0.96941
1.45508 1.22303 1.37671 1.29050 1.20036 0.85455 0.79378 0.83980
1.90749 1.67572 1.58502 1.24053 1.21506 0.93541 0.96043 1.02341
1.22016 0.89831 0.98676 1.07253 1.20772 0.89595 0.80590 0.77336
1.90849 1.52257 1.56557 1.36721 1.44907 1.21060 1.13665 1.54627
1.20930 0.87254 0.84593 0.75533 1.90813 1.75600 1.18805 1.52003
1.21789 0.92004 1.00855 1.01625 1.24295 0.97785 0.91998 1.00335
0.91887 0.77565 0.89321 0.92086 0.90385 0.89062 0.87002 0.75332
0.86597 0.85999 0.85514 0.74692 0.85833 0.85856 0.89190 0.90013
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16
2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16
3 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16
4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16
6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
7 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16
8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16
9 N -0.57 -13.98 5.29 -10.96 -0.06 -14.03 16
10 C 0.45 10.11 7.85 -10.98 -0.09 10.03 16
11 O -0.58 -15.20 16.01 5.55 0.09 -15.11 16
12 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16
13 N -0.44 -6.15 5.82 -246.09 -1.43 -7.58 16
14 C -0.01 -0.10 7.53 -7.54 -0.06 -0.15 16
15 C 0.11 1.07 4.59 -67.72 -0.31 0.76 16
16 N -0.69 -5.47 5.30 -53.54 -0.28 -5.75 16
17 C 0.53 4.09 7.16 -10.98 -0.08 4.01 16
18 O -0.53 -5.92 15.54 5.56 0.09 -5.83 16
19 C -0.11 -0.55 2.65 -91.52 -0.24 -0.79 16
20 C -0.14 -0.74 5.24 -27.80 -0.15 -0.88 16
21 C 0.53 3.88 7.74 -11.31 -0.09 3.79 16
22 O -0.49 -5.59 17.87 5.60 0.10 -5.49 16
23 N -0.68 -4.31 5.09 -11.74 -0.06 -4.37 16
24 C 0.53 3.71 7.74 -11.32 -0.09 3.62 16
25 O -0.50 -5.29 17.88 5.60 0.10 -5.19 16
26 C -0.12 -0.67 4.71 -27.81 -0.13 -0.80 16
27 C -0.01 -0.13 7.45 -7.54 -0.06 -0.19 16
28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
29 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16
30 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16
31 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16
32 H 0.08 0.90 7.42 -51.93 -0.39 0.52 16
33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16
34 H 0.11 1.03 7.45 -51.93 -0.39 0.64 16
35 H 0.41 2.82 8.31 -40.82 -0.34 2.48 16
36 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.13 0.65 7.74 -51.93 -0.40 0.25 16
39 H 0.41 2.43 8.79 -40.82 -0.36 2.07 16
40 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16
41 H 0.12 0.66 7.99 -51.93 -0.41 0.24 16
42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16
43 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16
LS Contribution 370.93 15.07 5.59 5.59
Total: -1.00 -36.52 370.93 -7.16 -43.68
By element:
Atomic # 1 Polarization: 15.56 SS G_CDS: -5.44 Total: 10.12 kcal
Atomic # 6 Polarization: 13.19 SS G_CDS: -1.55 Total: 11.64 kcal
Atomic # 7 Polarization: -54.10 SS G_CDS: -1.11 Total: -55.21 kcal
Atomic # 8 Polarization: -32.00 SS G_CDS: 0.38 Total: -31.62 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -36.52 -7.16 -43.68 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732111393.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.034 kcal
(2) G-P(sol) polarization free energy of solvation -36.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds