Wall clock time and date at job start Tue Mar 31 2020 20:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46493 * 114.34506 * 272.36508 * 15 14 13 17 17 C 1.34784 * 119.99875 * 248.92376 * 16 15 14 18 18 O 1.21274 * 120.00044 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99706 * 179.97438 * 17 16 15 20 20 C 1.53238 * 109.62408 * 299.63258 * 19 17 16 21 21 C 1.50628 * 109.13516 * 184.83466 * 20 19 17 22 22 O 1.21229 * 119.26722 * 208.95552 * 21 20 19 23 23 N 1.34138 * 121.37107 * 28.76746 * 21 20 19 24 24 C 1.34143 * 122.58728 * 359.64192 * 23 21 20 25 25 O 1.21228 * 119.36070 * 180.54020 * 24 23 21 26 26 C 1.50587 * 121.27848 * 0.51865 * 24 23 21 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08998 * 114.16723 * 139.66940 * 15 14 13 35 35 H 0.96998 * 120.00117 * 68.92512 * 16 15 14 36 36 H 1.08999 * 109.62115 * 60.00288 * 19 17 16 37 37 H 1.08998 * 109.52764 * 304.57085 * 20 19 17 38 38 H 1.09007 * 109.52102 * 64.75713 * 20 19 17 39 39 H 0.96995 * 118.70796 * 179.61368 * 23 21 20 40 40 H 1.09008 * 109.52080 * 211.02138 * 26 24 23 41 41 H 1.09002 * 109.52313 * 90.83652 * 26 24 23 42 42 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 43 43 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 3.6903 -8.3887 -0.3361 17 6 4.3377 -9.3660 -1.0013 18 8 3.8623 -9.8251 -2.0181 19 6 5.6529 -9.8873 -0.4820 20 6 6.6750 -8.7467 -0.4320 21 6 8.0150 -9.3019 -0.0258 22 8 8.7946 -8.5912 0.5714 23 7 8.3614 -10.5667 -0.3080 24 6 7.5456 -11.4119 -0.9558 25 8 7.9148 -12.5462 -1.1718 26 6 6.1798 -10.9791 -1.4194 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 1.9012 -8.5828 -1.5007 35 1 4.0708 -8.0212 0.4770 36 1 5.5145 -10.2988 0.5178 37 1 6.7570 -8.2875 -1.4172 38 1 6.3521 -7.9997 0.2932 39 1 9.2364 -10.8825 -0.0332 40 1 5.5019 -11.8325 -1.4021 41 1 6.2470 -10.5867 -2.4342 42 1 1.6845 -7.6690 1.2333 43 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732111393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:56 Heat of formation + Delta-G solvation = -101.711572 kcal Electronic energy + Delta-G solvation = -28570.135006 eV Core-core repulsion = 24230.700244 eV Total energy + Delta-G solvation = -4339.434763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.04875 -40.77471 -39.39584 -39.27096 -37.77682 -35.89903 -34.45403 -34.12021 -33.79432 -31.29234 -29.99160 -29.28396 -26.26903 -26.01837 -25.17157 -23.70147 -23.53597 -21.08747 -20.02605 -19.86340 -19.30029 -18.26569 -18.03333 -17.83826 -17.47851 -16.52090 -16.28015 -16.09240 -15.71420 -15.49123 -15.17832 -15.13143 -14.83628 -14.74699 -14.51246 -14.15525 -14.00575 -13.74379 -13.36146 -13.19358 -12.92184 -12.71606 -12.15476 -12.03333 -11.89661 -11.63697 -11.52203 -11.32208 -11.24706 -11.08887 -10.79872 -10.72836 -10.68712 -10.41404 -10.24188 -10.17726 -9.52623 -9.32842 -8.91285 -8.26230 -7.98895 -6.44229 -3.85095 1.00965 2.09439 2.23737 2.29107 2.69297 3.15883 3.24793 3.30586 3.41946 3.78556 3.85705 3.90526 3.95149 4.04524 4.18319 4.31006 4.38331 4.56494 4.74044 4.81500 4.93252 4.99931 5.14012 5.18198 5.28516 5.29415 5.32364 5.45687 5.52030 5.55722 5.58550 5.64523 5.89380 6.19897 6.24718 6.32183 6.41915 6.86320 7.00201 7.16514 7.32442 7.52744 7.80246 8.03244 8.59043 9.15887 9.51731 10.03674 10.73536 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002122 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.987409 B =13192.221653 C =14476.464737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.008 3.992 13 N -0.440 5.440 14 C -0.008 4.008 15 C 0.115 3.885 16 N -0.695 5.695 17 C 0.526 3.474 18 O -0.532 6.532 19 C -0.113 4.113 20 C -0.138 4.138 21 C 0.529 3.471 22 O -0.492 6.492 23 N -0.677 5.677 24 C 0.528 3.472 25 O -0.500 6.500 26 C -0.123 4.123 27 C -0.014 4.014 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.411 0.589 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.413 0.587 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -21.641 -0.694 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.124 4.124 13 N -0.162 5.162 14 C -0.138 4.138 15 C 0.008 3.992 16 N -0.345 5.345 17 C 0.312 3.688 18 O -0.409 6.409 19 C -0.134 4.134 20 C -0.178 4.178 21 C 0.317 3.683 22 O -0.364 6.364 23 N -0.343 5.343 24 C 0.317 3.683 25 O -0.372 6.372 26 C -0.163 4.163 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.247 0.753 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.253 0.747 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.544 -21.676 -0.828 22.658 hybrid contribution -0.504 0.989 0.063 1.112 sum 6.039 -20.688 -0.765 21.565 Atomic orbital electron populations 1.69610 1.05924 1.28148 1.50731 1.25256 0.95644 0.99720 0.97371 0.85863 0.79258 0.80821 0.78390 1.20423 1.20924 1.19402 1.19683 0.93332 0.82209 1.47541 0.87965 1.41879 1.09140 1.04621 1.64719 1.19646 0.88388 0.84364 0.84546 1.90522 1.13625 1.86958 1.54808 1.22509 0.94701 0.93082 1.02143 1.68834 1.30520 1.00102 1.16753 1.24368 1.03782 0.93229 0.92437 1.22021 0.84784 0.95412 0.96941 1.45508 1.22303 1.37671 1.29050 1.20036 0.85455 0.79378 0.83980 1.90749 1.67572 1.58502 1.24053 1.21506 0.93541 0.96043 1.02341 1.22016 0.89831 0.98676 1.07253 1.20772 0.89595 0.80590 0.77336 1.90849 1.52257 1.56557 1.36721 1.44907 1.21060 1.13665 1.54627 1.20930 0.87254 0.84593 0.75533 1.90813 1.75600 1.18805 1.52003 1.21789 0.92004 1.00855 1.01625 1.24295 0.97785 0.91998 1.00335 0.91887 0.77565 0.89321 0.92086 0.90385 0.89062 0.87002 0.75332 0.86597 0.85999 0.85514 0.74692 0.85833 0.85856 0.89190 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.57 -13.98 5.29 -10.96 -0.06 -14.03 16 10 C 0.45 10.11 7.85 -10.98 -0.09 10.03 16 11 O -0.58 -15.20 16.01 5.55 0.09 -15.11 16 12 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16 13 N -0.44 -6.15 5.82 -246.09 -1.43 -7.58 16 14 C -0.01 -0.10 7.53 -7.54 -0.06 -0.15 16 15 C 0.11 1.07 4.59 -67.72 -0.31 0.76 16 16 N -0.69 -5.47 5.30 -53.54 -0.28 -5.75 16 17 C 0.53 4.09 7.16 -10.98 -0.08 4.01 16 18 O -0.53 -5.92 15.54 5.56 0.09 -5.83 16 19 C -0.11 -0.55 2.65 -91.52 -0.24 -0.79 16 20 C -0.14 -0.74 5.24 -27.80 -0.15 -0.88 16 21 C 0.53 3.88 7.74 -11.31 -0.09 3.79 16 22 O -0.49 -5.59 17.87 5.60 0.10 -5.49 16 23 N -0.68 -4.31 5.09 -11.74 -0.06 -4.37 16 24 C 0.53 3.71 7.74 -11.32 -0.09 3.62 16 25 O -0.50 -5.29 17.88 5.60 0.10 -5.19 16 26 C -0.12 -0.67 4.71 -27.81 -0.13 -0.80 16 27 C -0.01 -0.13 7.45 -7.54 -0.06 -0.19 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 30 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 31 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 32 H 0.08 0.90 7.42 -51.93 -0.39 0.52 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.11 1.03 7.45 -51.93 -0.39 0.64 16 35 H 0.41 2.82 8.31 -40.82 -0.34 2.48 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.65 7.74 -51.93 -0.40 0.25 16 39 H 0.41 2.43 8.79 -40.82 -0.36 2.07 16 40 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.12 0.66 7.99 -51.93 -0.41 0.24 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -36.52 370.93 -7.16 -43.68 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.44 Total: 10.12 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -1.55 Total: 11.64 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.11 Total: -55.21 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: 0.38 Total: -31.62 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.52 -7.16 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732111393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.034 kcal (2) G-P(sol) polarization free energy of solvation -36.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds