Wall clock time and date at job start Tue Mar 31 2020 20:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46493 * 114.34506 * 272.36508 * 15 14 13 17 17 C 1.34784 * 119.99875 * 248.92376 * 16 15 14 18 18 O 1.21274 * 120.00044 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99706 * 179.97438 * 17 16 15 20 20 C 1.53238 * 109.62408 * 299.63258 * 19 17 16 21 21 C 1.50628 * 109.13516 * 184.83466 * 20 19 17 22 22 O 1.21229 * 119.26722 * 208.95552 * 21 20 19 23 23 N 1.34138 * 121.37107 * 28.76746 * 21 20 19 24 24 C 1.34143 * 122.58728 * 359.64192 * 23 21 20 25 25 O 1.21228 * 119.36070 * 180.54020 * 24 23 21 26 26 C 1.50587 * 121.27848 * 0.51865 * 24 23 21 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08998 * 114.16723 * 139.66940 * 15 14 13 35 35 H 0.96998 * 120.00117 * 68.92512 * 16 15 14 36 36 H 1.08999 * 109.62115 * 60.00288 * 19 17 16 37 37 H 1.08998 * 109.52764 * 304.57085 * 20 19 17 38 38 H 1.09007 * 109.52102 * 64.75713 * 20 19 17 39 39 H 0.96995 * 118.70796 * 179.61368 * 23 21 20 40 40 H 1.09008 * 109.52080 * 211.02138 * 26 24 23 41 41 H 1.09002 * 109.52313 * 90.83652 * 26 24 23 42 42 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 43 43 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 3.6903 -8.3887 -0.3361 17 6 4.3377 -9.3660 -1.0013 18 8 3.8623 -9.8251 -2.0181 19 6 5.6529 -9.8873 -0.4820 20 6 6.6750 -8.7467 -0.4320 21 6 8.0150 -9.3019 -0.0258 22 8 8.7946 -8.5912 0.5714 23 7 8.3614 -10.5667 -0.3080 24 6 7.5456 -11.4119 -0.9558 25 8 7.9148 -12.5462 -1.1718 26 6 6.1798 -10.9791 -1.4194 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 1.9012 -8.5828 -1.5007 35 1 4.0708 -8.0212 0.4770 36 1 5.5145 -10.2988 0.5178 37 1 6.7570 -8.2875 -1.4172 38 1 6.3521 -7.9997 0.2932 39 1 9.2364 -10.8825 -0.0332 40 1 5.5019 -11.8325 -1.4021 41 1 6.2470 -10.5867 -2.4342 42 1 1.6845 -7.6690 1.2333 43 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732111393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:55 Heat of formation + Delta-G solvation = -134.938609 kcal Electronic energy + Delta-G solvation = -28571.575839 eV Core-core repulsion = 24230.700244 eV Total energy + Delta-G solvation = -4340.875595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66935 -41.63942 -40.32163 -39.98346 -39.42752 -36.57598 -35.93000 -35.11470 -34.66955 -33.24711 -31.12868 -29.86301 -27.52543 -26.87639 -26.32460 -24.86760 -24.25515 -21.75490 -21.17410 -20.68114 -20.36107 -19.87944 -18.90217 -18.57089 -18.14685 -17.74889 -17.25882 -16.95930 -16.63847 -16.52499 -16.33897 -16.22071 -15.79448 -15.59508 -15.49499 -15.32935 -15.01061 -14.84641 -14.52920 -14.35960 -13.67913 -13.64248 -13.47553 -13.40093 -12.98005 -12.57783 -12.49291 -12.42710 -12.33992 -12.23675 -12.09877 -11.98529 -11.75994 -11.47618 -11.42110 -11.38968 -10.87575 -10.34569 -10.06141 -9.98400 -9.67642 -8.45320 -5.93422 0.38211 1.38157 1.41932 1.47148 1.54212 1.65549 1.69613 2.07235 2.09847 2.29652 2.86704 2.89885 3.21510 3.28751 3.37022 3.43336 3.51849 3.65380 3.84728 3.94534 4.05780 4.22317 4.34624 4.37186 4.47891 4.54284 4.56624 4.58552 4.71022 4.74921 4.84359 4.86553 4.90993 4.98404 5.39266 5.42563 5.52755 5.73459 5.90150 6.09759 6.26785 6.53262 6.63211 6.72702 7.15663 7.18027 7.60295 8.16785 8.72054 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002122 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.987409 B =13192.221653 C =14476.464737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.578 5.578 10 C 0.442 3.558 11 O -0.618 6.618 12 C 0.021 3.979 13 N -0.469 5.469 14 C -0.016 4.016 15 C 0.129 3.871 16 N -0.692 5.692 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.098 4.098 20 C -0.133 4.133 21 C 0.540 3.460 22 O -0.534 6.534 23 N -0.670 5.670 24 C 0.540 3.460 25 O -0.535 6.535 26 C -0.118 4.118 27 C -0.002 4.002 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.416 0.584 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -22.488 -0.348 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.216 5.216 10 C 0.229 3.771 11 O -0.503 6.503 12 C -0.111 4.111 13 N -0.191 5.191 14 C -0.146 4.146 15 C 0.022 3.978 16 N -0.343 5.343 17 C 0.319 3.681 18 O -0.442 6.442 19 C -0.119 4.119 20 C -0.173 4.173 21 C 0.331 3.669 22 O -0.408 6.408 23 N -0.335 5.335 24 C 0.331 3.669 25 O -0.409 6.409 26 C -0.157 4.157 27 C -0.131 4.131 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.254 0.746 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.255 0.745 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.417 -22.541 -0.471 23.187 hybrid contribution -0.132 1.194 -0.067 1.203 sum 5.286 -21.346 -0.538 21.998 Atomic orbital electron populations 1.69665 1.06716 1.29167 1.50666 1.25991 0.96545 1.02293 0.96527 0.84971 0.77911 0.77146 0.78588 1.19737 1.19581 1.19885 1.19613 0.92576 0.84133 1.49667 0.90552 1.41970 1.09283 1.04757 1.65626 1.20884 0.88318 0.85985 0.81877 1.90487 1.15886 1.87955 1.56009 1.22393 0.94461 0.90026 1.04199 1.68792 1.31324 1.01195 1.17837 1.24446 1.02650 0.95435 0.92089 1.21870 0.85385 0.93771 0.96728 1.45523 1.22020 1.37511 1.29198 1.20337 0.85830 0.78732 0.83239 1.90747 1.68553 1.59509 1.25425 1.21431 0.91652 0.95444 1.03420 1.22020 0.88702 0.98869 1.07723 1.21006 0.89689 0.80197 0.76050 1.90843 1.53628 1.57542 1.38804 1.44865 1.21188 1.13400 1.54038 1.21114 0.87491 0.83827 0.74479 1.90809 1.76355 1.20311 1.53459 1.21774 0.90921 1.01187 1.01842 1.24354 0.98660 0.88882 1.01228 0.91390 0.77050 0.87155 0.89843 0.89653 0.91702 0.86235 0.74596 0.83932 0.85373 0.84925 0.74463 0.85331 0.85473 0.87641 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 2 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 3 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 8 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 9 N -0.58 -28.89 5.29 -306.98 -1.62 -30.51 16 10 C 0.44 20.15 7.85 87.66 0.69 20.84 16 11 O -0.62 -33.33 16.01 -3.07 -0.05 -33.38 16 12 C 0.02 0.63 5.30 85.56 0.45 1.09 16 13 N -0.47 -12.24 5.82 -932.48 -5.43 -17.67 16 14 C -0.02 -0.37 7.53 83.58 0.63 0.26 16 15 C 0.13 2.10 4.59 45.45 0.21 2.31 16 16 N -0.69 -9.33 5.30 -441.70 -2.34 -11.67 16 17 C 0.53 7.11 7.16 87.66 0.63 7.74 16 18 O -0.56 -11.48 15.54 -3.01 -0.05 -11.52 16 19 C -0.10 -0.73 2.65 -11.38 -0.03 -0.76 16 20 C -0.13 -1.22 5.24 29.90 0.16 -1.06 16 21 C 0.54 7.42 7.74 87.73 0.68 8.10 16 22 O -0.53 -12.00 17.87 -2.87 -0.05 -12.05 16 23 N -0.67 -7.95 5.09 -428.59 -2.18 -10.13 16 24 C 0.54 6.96 7.74 87.72 0.68 7.64 16 25 O -0.53 -10.97 17.88 -2.87 -0.05 -11.02 16 26 C -0.12 -1.07 4.71 29.89 0.14 -0.93 16 27 C 0.00 -0.04 7.45 83.58 0.62 0.59 16 28 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 30 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 31 H 0.08 2.16 7.30 -2.39 -0.02 2.15 16 32 H 0.09 1.84 7.42 -2.39 -0.02 1.82 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.86 7.45 -2.39 -0.02 1.84 16 35 H 0.42 4.74 8.31 -92.71 -0.77 3.96 16 36 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.13 1.14 7.74 -2.38 -0.02 1.12 16 39 H 0.42 4.70 8.79 -92.71 -0.81 3.89 16 40 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.13 1.15 7.99 -2.39 -0.02 1.13 16 42 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.10 1.23 7.91 -2.39 -0.02 1.21 16 Total: -1.00 -80.65 370.93 -4.54 -85.19 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -1.21 Total: 29.03 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.14 Total: 27.82 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -11.29 Total: -118.73 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -0.20 Total: -67.98 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -80.65 -4.54 -85.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732111393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.749 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds