Wall clock time and date at job start Tue Mar 31 2020 21:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35249 * 126.69330 * 2 1 4 4 C 1.42051 * 103.95686 * 179.97438 * 3 2 1 5 5 N 1.39348 * 126.89657 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00384 * 0.02562 * 5 4 3 7 7 O 1.21356 * 119.99574 * 359.97438 * 6 5 4 8 8 C 1.49379 * 119.99939 * 180.02562 * 6 5 4 9 9 O 1.21355 * 120.00163 * 353.52516 * 8 6 5 10 10 N 1.34770 * 119.99558 * 173.53194 * 8 6 5 11 11 C 1.47152 * 120.98358 * 1.13296 * 10 8 6 12 12 C 1.52883 * 108.60844 * 230.50251 * 11 10 8 13 13 O 1.42964 * 109.30009 * 307.93663 * 12 11 10 14 14 C 1.42957 * 114.16315 * 62.44808 * 13 12 11 15 15 H 1.08998 * 109.51564 * 57.34619 * 14 13 12 16 16 C 1.53002 * 109.55343 * 177.47019 * 14 13 12 17 17 N 1.46497 * 109.47245 * 299.77514 * 16 14 13 18 18 C 1.36935 * 120.00442 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00408 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99622 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 89.99553 * 22 20 18 24 24 H 1.48496 * 109.47217 * 209.99763 * 22 20 18 25 25 H 1.48503 * 109.47044 * 329.99614 * 22 20 18 26 26 C 1.47151 * 120.98202 * 181.41828 * 10 8 6 27 27 N 1.30754 * 106.19959 * 0.02562 * 4 3 2 28 28 O 1.20904 * 111.47405 * 359.97438 * 27 4 3 29 29 H 1.09000 * 109.46549 * 89.99908 * 1 2 3 30 30 H 1.08995 * 109.47312 * 210.00004 * 1 2 3 31 31 H 1.08995 * 109.47090 * 330.00098 * 1 2 3 32 32 H 1.08004 * 128.01701 * 359.71707 * 3 2 1 33 33 H 0.97000 * 120.00336 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.68565 * 350.28522 * 11 10 8 35 35 H 1.09008 * 109.68162 * 110.84166 * 11 10 8 36 36 H 1.09005 * 109.57834 * 187.92287 * 12 11 10 37 37 H 1.09000 * 109.36639 * 67.82366 * 12 11 10 38 38 H 1.09002 * 109.47067 * 59.76955 * 16 14 13 39 39 H 1.08990 * 109.47440 * 179.76857 * 16 14 13 40 40 H 0.97005 * 119.99513 * 359.97438 * 17 16 14 41 41 H 0.96996 * 119.99179 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.68707 * 249.16205 * 26 10 8 43 43 H 1.09001 * 109.68013 * 9.71861 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6253 0.5355 0.0006 5 7 4.8276 1.2399 0.0004 6 6 4.8190 2.5877 0.0000 7 8 3.7642 3.1878 -0.0006 8 6 6.1079 3.3428 -0.0009 9 8 7.1594 2.7485 0.1173 10 7 6.1030 4.6840 -0.1328 11 6 4.8395 5.4288 -0.2525 12 6 4.9329 6.3562 -1.4643 13 8 6.1254 7.1391 -1.3694 14 6 7.3318 6.3724 -1.3889 15 1 7.3689 5.7749 -2.2998 16 6 8.5374 7.3135 -1.3457 17 7 8.5084 8.1980 -2.5132 18 6 9.4945 9.1316 -2.6895 19 1 10.2935 9.2162 -1.9677 20 6 9.4668 9.9701 -3.7955 21 7 8.4929 9.8674 -4.6749 22 14 10.8117 11.2442 -4.0356 23 1 11.9210 10.6503 -4.8242 24 1 10.2596 12.4157 -4.7622 25 1 11.3234 11.6793 -2.7112 26 6 7.3611 5.4464 -0.1675 27 7 3.4764 -0.7636 0.0003 28 8 2.3082 -1.0752 0.0002 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0303 2.1263 -0.0042 33 1 5.6707 0.7604 0.0005 34 1 4.0134 4.7309 -0.3886 35 1 4.6758 6.0212 0.6478 36 1 4.0652 7.0157 -1.4873 37 1 4.9611 5.7587 -2.3755 38 1 8.4987 7.9120 -0.4355 39 1 9.4563 6.7276 -1.3565 40 1 7.7911 8.1218 -3.1617 41 1 8.4738 10.4531 -5.4479 42 1 7.4557 6.0405 0.7414 43 1 8.2042 4.7600 -0.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733751506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:47 Heat of formation + Delta-G solvation = 2.445605 kcal Electronic energy + Delta-G solvation = -28963.601597 eV Core-core repulsion = 24628.683428 eV Total energy + Delta-G solvation = -4334.918169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.34599 -41.58227 -39.65913 -38.43128 -36.58437 -35.00658 -34.46703 -34.08278 -32.49107 -32.25009 -30.23458 -28.59757 -28.28970 -26.63536 -25.13661 -23.68929 -23.54443 -22.38609 -21.46661 -20.97812 -20.26931 -18.16144 -18.11599 -18.01828 -17.36100 -17.14080 -16.70393 -16.44881 -16.36550 -15.82041 -15.40684 -14.94041 -14.62917 -14.43285 -14.24669 -14.05164 -14.01544 -13.75402 -13.45846 -13.15994 -13.06238 -12.80995 -12.66408 -12.43227 -12.29482 -11.72245 -11.70482 -11.41393 -11.03462 -10.91815 -10.79614 -10.65354 -10.14204 -9.97127 -9.88986 -9.73861 -9.56061 -9.39062 -8.87520 -8.75990 -6.90346 -5.73530 -3.02472 0.55301 1.10138 1.47291 1.88763 2.61620 2.72756 2.80996 3.45537 3.50315 3.52342 3.59176 3.87824 3.94130 4.35296 4.53042 4.55465 4.73466 4.75518 4.89845 4.90937 5.01412 5.08710 5.11665 5.20238 5.23352 5.38039 5.50445 5.58904 5.68146 5.72667 5.80076 5.86173 5.90280 5.99317 6.23903 6.28073 6.51317 6.64817 6.81024 7.07155 7.40876 7.43970 7.71153 7.82093 8.44492 9.56279 10.12978 10.48883 11.49198 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029081 B = 0.002003 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.604757 B =13973.212419 C =14396.889324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 C -0.226 4.226 4 C 0.242 3.758 5 N -0.603 5.603 6 C 0.527 3.473 7 O -0.483 6.483 8 C 0.514 3.486 9 O -0.515 6.515 10 N -0.571 5.571 11 C 0.020 3.980 12 C 0.047 3.953 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.064 0.936 16 C 0.164 3.836 17 N -0.725 5.725 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.081 3.919 27 N -0.381 5.381 28 O 0.103 5.897 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.432 0.568 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.388 0.612 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.813 -20.633 11.807 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.249 4.249 4 C -0.007 4.007 5 N -0.256 5.256 6 C 0.310 3.690 7 O -0.357 6.357 8 C 0.295 3.705 9 O -0.391 6.391 10 N -0.304 5.304 11 C -0.101 4.101 12 C -0.031 4.031 13 O -0.275 6.275 14 C 0.015 3.985 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.041 4.041 27 N -0.095 5.095 28 O 0.040 5.960 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.210 0.790 33 H 0.272 0.728 34 H 0.170 0.830 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.994 -21.187 11.918 29.660 hybrid contribution 0.676 1.019 -0.403 1.287 sum -16.317 -20.168 11.515 28.383 Atomic orbital electron populations 1.20384 0.83446 1.04927 1.04454 1.24496 0.96624 0.85631 1.01610 1.22727 0.88959 1.02318 1.10915 1.20441 0.87966 0.89063 1.03227 1.42093 1.07404 1.05795 1.70263 1.20456 0.90641 0.81674 0.76245 1.90346 1.32998 1.65751 1.46572 1.19346 0.88177 0.83203 0.79806 1.90814 1.31730 1.67797 1.48780 1.48013 1.09662 1.04589 1.68136 1.23835 0.87462 0.98231 1.00596 1.22889 0.89692 0.94561 0.95994 1.88176 1.12687 1.32458 1.94141 1.22793 0.87093 0.92989 0.95604 0.91779 1.20623 0.91604 0.91483 0.92760 1.42199 1.30545 1.39873 1.24385 1.19223 1.02410 1.09892 1.05594 0.91113 1.24757 0.98558 1.00094 0.97598 1.69681 1.33022 1.41551 1.13722 0.86167 0.81153 0.81120 0.77598 1.21754 1.21779 1.20750 1.22614 0.85745 0.95091 1.00692 1.74102 0.97693 1.12911 1.24769 1.84821 1.10323 1.32422 1.68411 0.89061 0.89605 0.88679 0.79014 0.72820 0.83018 0.90086 0.87471 0.92998 0.95259 0.94616 0.77799 0.93547 0.89376 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.45 36.00 0.38 0.18 16 2 C -0.02 -0.14 7.48 -35.37 -0.26 -0.40 16 3 C -0.23 -1.97 9.79 -39.19 -0.38 -2.35 16 4 C 0.24 2.51 8.17 -154.94 -1.27 1.24 16 5 N -0.60 -5.98 5.41 -11.86 -0.06 -6.04 16 6 C 0.53 5.60 7.77 -11.62 -0.09 5.51 16 7 O -0.48 -5.11 10.32 5.49 0.06 -5.05 16 8 C 0.51 6.28 7.77 -11.62 -0.09 6.19 16 9 O -0.51 -7.22 15.96 5.49 0.09 -7.13 16 10 N -0.57 -7.08 3.03 -173.06 -0.52 -7.60 16 11 C 0.02 0.22 6.35 -3.75 -0.02 0.19 16 12 C 0.05 0.60 6.97 37.10 0.26 0.86 16 13 O -0.36 -6.19 10.15 -35.23 -0.36 -6.55 16 14 C 0.07 1.23 2.86 -26.57 -0.08 1.16 16 15 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 16 C 0.16 3.29 5.96 -4.04 -0.02 3.26 16 17 N -0.73 -18.79 5.50 -59.91 -0.33 -19.12 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.08 1.09 5.93 -3.53 -0.02 1.07 16 27 N -0.38 -4.12 12.10 31.18 0.38 -3.74 16 28 O 0.10 0.94 11.19 17.04 0.19 1.13 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.19 1.58 6.22 -52.48 -0.33 1.25 16 33 H 0.43 3.86 8.31 -40.82 -0.34 3.52 16 34 H 0.15 1.55 3.98 -56.33 -0.22 1.32 16 35 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 10.71 7.55 -40.82 -0.31 10.41 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.11 1.41 7.09 -51.93 -0.37 1.05 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -34.32 363.26 -6.58 -40.90 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.34 Total: 8.59 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.85 Total: 9.42 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.18 Total: -64.38 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.02 Total: -17.60 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.32 -6.58 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733751506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.346 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds