Wall clock time and date at job start Tue Mar 31 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35249 * 126.69330 * 2 1 4 4 C 1.42051 * 103.95686 * 179.97438 * 3 2 1 5 5 N 1.39348 * 126.89657 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00384 * 0.02562 * 5 4 3 7 7 O 1.21356 * 119.99574 * 359.97438 * 6 5 4 8 8 C 1.49379 * 119.99939 * 180.02562 * 6 5 4 9 9 O 1.21355 * 120.00163 * 353.52516 * 8 6 5 10 10 N 1.34770 * 119.99558 * 173.53194 * 8 6 5 11 11 C 1.47152 * 120.98358 * 1.13296 * 10 8 6 12 12 C 1.52883 * 108.60844 * 230.50251 * 11 10 8 13 13 O 1.42964 * 109.30009 * 307.93663 * 12 11 10 14 14 C 1.42957 * 114.16315 * 62.44808 * 13 12 11 15 15 H 1.08998 * 109.51564 * 57.34619 * 14 13 12 16 16 C 1.53002 * 109.55343 * 177.47019 * 14 13 12 17 17 N 1.46497 * 109.47245 * 299.77514 * 16 14 13 18 18 C 1.36935 * 120.00442 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00408 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99622 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 89.99553 * 22 20 18 24 24 H 1.48496 * 109.47217 * 209.99763 * 22 20 18 25 25 H 1.48503 * 109.47044 * 329.99614 * 22 20 18 26 26 C 1.47151 * 120.98202 * 181.41828 * 10 8 6 27 27 N 1.30754 * 106.19959 * 0.02562 * 4 3 2 28 28 O 1.20904 * 111.47405 * 359.97438 * 27 4 3 29 29 H 1.09000 * 109.46549 * 89.99908 * 1 2 3 30 30 H 1.08995 * 109.47312 * 210.00004 * 1 2 3 31 31 H 1.08995 * 109.47090 * 330.00098 * 1 2 3 32 32 H 1.08004 * 128.01701 * 359.71707 * 3 2 1 33 33 H 0.97000 * 120.00336 * 180.02562 * 5 4 3 34 34 H 1.08995 * 109.68565 * 350.28522 * 11 10 8 35 35 H 1.09008 * 109.68162 * 110.84166 * 11 10 8 36 36 H 1.09005 * 109.57834 * 187.92287 * 12 11 10 37 37 H 1.09000 * 109.36639 * 67.82366 * 12 11 10 38 38 H 1.09002 * 109.47067 * 59.76955 * 16 14 13 39 39 H 1.08990 * 109.47440 * 179.76857 * 16 14 13 40 40 H 0.97005 * 119.99513 * 359.97438 * 17 16 14 41 41 H 0.96996 * 119.99179 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.68707 * 249.16205 * 26 10 8 43 43 H 1.09001 * 109.68013 * 9.71861 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6253 0.5355 0.0006 5 7 4.8276 1.2399 0.0004 6 6 4.8190 2.5877 0.0000 7 8 3.7642 3.1878 -0.0006 8 6 6.1079 3.3428 -0.0009 9 8 7.1594 2.7485 0.1173 10 7 6.1030 4.6840 -0.1328 11 6 4.8395 5.4288 -0.2525 12 6 4.9329 6.3562 -1.4643 13 8 6.1254 7.1391 -1.3694 14 6 7.3318 6.3724 -1.3889 15 1 7.3689 5.7749 -2.2998 16 6 8.5374 7.3135 -1.3457 17 7 8.5084 8.1980 -2.5132 18 6 9.4945 9.1316 -2.6895 19 1 10.2935 9.2162 -1.9677 20 6 9.4668 9.9701 -3.7955 21 7 8.4929 9.8674 -4.6749 22 14 10.8117 11.2442 -4.0356 23 1 11.9210 10.6503 -4.8242 24 1 10.2596 12.4157 -4.7622 25 1 11.3234 11.6793 -2.7112 26 6 7.3611 5.4464 -0.1675 27 7 3.4764 -0.7636 0.0003 28 8 2.3082 -1.0752 0.0002 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0303 2.1263 -0.0042 33 1 5.6707 0.7604 0.0005 34 1 4.0134 4.7309 -0.3886 35 1 4.6758 6.0212 0.6478 36 1 4.0652 7.0157 -1.4873 37 1 4.9611 5.7587 -2.3755 38 1 8.4987 7.9120 -0.4355 39 1 9.4563 6.7276 -1.3565 40 1 7.7911 8.1218 -3.1617 41 1 8.4738 10.4531 -5.4479 42 1 7.4557 6.0405 0.7414 43 1 8.2042 4.7600 -0.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733751506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:46 Heat of formation + Delta-G solvation = -23.082404 kcal Electronic energy + Delta-G solvation = -28964.708575 eV Core-core repulsion = 24628.683428 eV Total energy + Delta-G solvation = -4336.025146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.04211 -42.50440 -40.68402 -39.52799 -37.46321 -36.56445 -35.75566 -34.61097 -33.93673 -33.21884 -31.92786 -29.70212 -28.71677 -28.02395 -26.30721 -25.07352 -24.49234 -23.71298 -22.43443 -22.09883 -21.24117 -19.28148 -18.95794 -18.86697 -18.77304 -18.16183 -17.64658 -17.50880 -17.40070 -16.90266 -16.68526 -16.22236 -15.97695 -15.70425 -15.38609 -15.03655 -14.86567 -14.54738 -14.40677 -14.39825 -14.09939 -13.96612 -13.72366 -13.30257 -13.20251 -13.08379 -12.81040 -12.67884 -12.42069 -12.29856 -12.28941 -12.06333 -11.91322 -11.73823 -11.29208 -10.95661 -10.52537 -10.45958 -10.14384 -9.85287 -9.00299 -7.93668 -5.23073 -0.30349 0.46966 0.59701 1.12779 1.48215 1.50541 1.58977 1.81739 1.85059 2.16484 2.56705 2.72408 2.74667 3.22911 3.40216 3.47972 3.65378 3.83696 3.90915 3.98361 4.02702 4.12090 4.26618 4.33671 4.38988 4.42081 4.54145 4.68228 4.76199 4.77948 4.83322 4.90762 4.94208 4.99173 5.07770 5.13281 5.28015 5.48140 5.49568 5.84625 6.19372 6.23037 6.28190 6.47121 7.15956 7.34011 8.08332 8.32390 9.30069 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029081 B = 0.002003 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.604757 B =13973.212419 C =14396.889324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.002 4.002 3 C -0.245 4.245 4 C 0.225 3.775 5 N -0.598 5.598 6 C 0.534 3.466 7 O -0.482 6.482 8 C 0.516 3.484 9 O -0.535 6.535 10 N -0.573 5.573 11 C 0.029 3.971 12 C 0.041 3.959 13 O -0.387 6.387 14 C 0.085 3.915 15 H 0.052 0.948 16 C 0.160 3.840 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.080 0.920 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.091 3.909 27 N -0.404 5.404 28 O 0.098 5.902 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.197 0.803 33 H 0.435 0.565 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.048 0.952 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.100 0.900 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.926 -21.171 12.989 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.267 4.267 4 C -0.023 4.023 5 N -0.250 5.250 6 C 0.316 3.684 7 O -0.355 6.355 8 C 0.298 3.702 9 O -0.412 6.412 10 N -0.306 5.306 11 C -0.091 4.091 12 C -0.036 4.036 13 O -0.305 6.305 14 C 0.026 3.974 15 H 0.070 0.930 16 C 0.033 3.967 17 N -0.383 5.383 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.193 1.193 26 C -0.032 4.032 27 N -0.119 5.119 28 O 0.036 5.964 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.214 0.786 33 H 0.275 0.725 34 H 0.182 0.818 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.110 -21.762 13.145 31.215 hybrid contribution 0.915 1.097 -0.731 1.605 sum -17.195 -20.665 12.414 29.611 Atomic orbital electron populations 1.20659 0.80189 1.06486 1.05873 1.25223 0.98115 0.84386 0.98831 1.22857 0.88512 1.03023 1.12353 1.20707 0.88487 0.89333 1.03780 1.41983 1.07702 1.05505 1.69832 1.20020 0.89899 0.81835 0.76599 1.90329 1.32602 1.65792 1.46806 1.19544 0.88520 0.83026 0.79090 1.90805 1.32635 1.68158 1.49601 1.48048 1.09680 1.04780 1.68095 1.23874 0.87093 0.98022 1.00149 1.23134 0.88615 0.95025 0.96783 1.88117 1.13877 1.34149 1.94404 1.22517 0.86040 0.92240 0.96632 0.93021 1.20791 0.93903 0.91398 0.90638 1.42402 1.29660 1.40487 1.25784 1.19675 1.02780 1.09865 1.05419 0.90242 1.25633 1.01105 1.02629 0.97711 1.69847 1.35146 1.42736 1.14328 0.85081 0.78258 0.78192 0.77853 1.21343 1.22242 1.19280 1.22398 0.86531 0.94737 0.99495 1.74094 0.98691 1.13266 1.25866 1.84789 1.10136 1.33183 1.68297 0.87488 0.88039 0.87090 0.78600 0.72517 0.81838 0.88958 0.85554 0.93315 0.94935 0.93420 0.79316 0.94050 0.88174 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.45 71.24 0.74 0.56 16 2 C 0.00 -0.02 7.48 25.00 0.19 0.16 16 3 C -0.24 -3.92 9.79 22.53 0.22 -3.70 16 4 C 0.23 4.52 8.17 134.16 1.10 5.62 16 5 N -0.60 -11.53 5.41 -310.80 -1.68 -13.21 16 6 C 0.53 10.78 7.77 87.25 0.68 11.46 16 7 O -0.48 -9.41 10.32 -3.27 -0.03 -9.44 16 8 C 0.52 12.10 7.77 87.25 0.68 12.78 16 9 O -0.53 -14.63 15.96 -3.26 -0.05 -14.68 16 10 N -0.57 -13.49 3.03 -819.81 -2.48 -15.97 16 11 C 0.03 0.59 6.35 86.22 0.55 1.14 16 12 C 0.04 1.02 6.97 71.94 0.50 1.52 16 13 O -0.39 -13.31 10.15 -148.98 -1.51 -14.82 16 14 C 0.08 2.80 2.86 30.70 0.09 2.89 16 15 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.16 6.38 5.96 86.38 0.51 6.90 16 17 N -0.74 -38.78 5.50 -343.46 -1.89 -40.67 16 18 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 21 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 22 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.09 2.36 5.93 86.36 0.51 2.87 16 27 N -0.40 -8.56 12.10 -56.34 -0.68 -9.24 16 28 O 0.10 1.68 11.19 71.17 0.80 2.48 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.20 2.90 6.22 -2.91 -0.02 2.89 16 33 H 0.44 7.70 8.31 -92.71 -0.77 6.93 16 34 H 0.17 3.00 3.98 -72.02 -0.29 2.72 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.38 21.25 7.55 -92.70 -0.70 20.55 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.11 2.77 7.09 -2.39 -0.02 2.76 16 Total: -1.00 -73.92 363.26 1.19 -72.73 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.66 Total: 29.52 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 7.07 Total: 24.94 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -6.45 Total: -139.44 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.80 Total: -36.47 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.92 1.19 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733751506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.650 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds