Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48507 * 109.47160 * 270.00035 * 3 2 1 5 5 H 1.48497 * 109.47401 * 30.00125 * 3 2 1 6 6 H 1.48507 * 109.47011 * 150.00466 * 3 2 1 7 7 C 1.38949 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00193 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99730 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00140 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00087 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47431 * 180.02562 * 12 10 9 14 14 C 1.48283 * 111.00118 * 78.76310 * 13 12 10 15 15 C 1.56013 * 105.06509 * 122.55075 * 14 13 12 16 16 H 1.09004 * 116.21796 * 159.74484 * 15 14 13 17 17 C 1.57064 * 99.68057 * 32.87298 * 15 14 13 18 18 C 1.49701 * 110.99887 * 196.36667 * 13 12 10 19 19 H 1.09003 * 116.16915 * 76.14649 * 18 13 12 20 20 C 1.56016 * 104.08647 * 306.98140 * 18 13 12 21 21 N 1.49281 * 104.12649 * 288.79425 * 15 14 13 22 22 C 1.34781 * 126.92852 * 246.92928 * 21 15 14 23 23 O 1.21282 * 120.00106 * 359.97438 * 22 21 15 24 24 C 1.50696 * 119.99946 * 179.97438 * 22 21 15 25 25 H 1.08991 * 110.50941 * 40.69844 * 24 22 21 26 26 C 1.54087 * 110.56440 * 277.95403 * 24 22 21 27 27 O 1.46043 * 103.84853 * 241.46874 * 26 24 22 28 28 C 1.33769 * 109.51037 * 359.88138 * 27 26 24 29 29 O 1.21511 * 123.07498 * 180.09899 * 28 27 26 30 30 N 1.34010 * 113.85712 * 0.08226 * 28 27 26 31 31 H 0.96996 * 119.99605 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00325 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47539 * 59.99011 * 12 10 9 34 34 H 1.09004 * 109.46573 * 299.99420 * 12 10 9 35 35 H 1.08999 * 110.32210 * 241.44332 * 14 13 12 36 36 H 1.08990 * 110.32271 * 3.54611 * 14 13 12 37 37 H 1.09007 * 113.08345 * 191.34111 * 17 15 14 38 38 H 1.08997 * 111.63222 * 63.93743 * 17 15 14 39 39 H 1.09000 * 110.31116 * 46.86483 * 20 18 13 40 40 H 1.09000 * 110.31488 * 169.04531 * 20 18 13 41 41 H 1.09004 * 110.52449 * 0.06185 * 26 24 22 42 42 H 1.09007 * 110.51961 * 122.80044 * 26 24 22 43 43 H 0.96996 * 125.56401 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 2.7477 -6.2081 1.3578 15 6 2.3999 -7.6920 1.6914 16 1 2.9935 -8.1610 2.4762 17 6 2.4936 -8.3151 0.2527 18 6 1.5280 -7.2586 -0.3947 19 1 1.3136 -7.3816 -1.4564 20 6 0.3081 -7.3618 0.5724 21 7 0.9222 -7.6813 1.9026 22 6 0.2678 -7.9062 3.0592 23 8 0.8907 -8.1490 4.0711 24 6 -1.2379 -7.8559 3.0951 25 1 -1.6571 -8.3293 2.2073 26 6 -1.7282 -6.4000 3.2147 27 8 -2.4548 -6.3788 4.4814 28 6 -2.4208 -7.5955 5.0364 29 8 -2.9520 -7.8552 6.0979 30 7 -1.7475 -8.5018 4.3145 31 1 -0.4849 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6173 -4.9205 -0.8912 34 1 0.6169 -4.9208 0.8887 35 1 3.8280 -6.0632 1.3586 36 1 2.2758 -5.5366 2.0750 37 1 2.0956 -9.3284 0.1990 38 1 3.5055 -8.2518 -0.1474 39 1 -0.2230 -6.4109 0.6144 40 1 -0.3638 -8.1575 0.2504 41 1 -0.8822 -5.7133 3.2470 42 1 -2.3922 -6.1512 2.3868 43 1 -1.6177 -9.4321 4.5564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753420221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -77.584712 kcal Electronic energy + Delta-G solvation = -30298.191107 eV Core-core repulsion = 25959.802563 eV Total energy + Delta-G solvation = -4338.388544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18943 -41.24540 -38.97623 -37.93771 -37.37612 -35.02691 -34.33285 -33.74368 -31.77985 -31.17512 -30.08318 -29.81945 -26.74195 -25.80963 -24.74645 -24.09138 -22.73122 -21.78000 -20.82127 -19.80197 -18.92748 -18.55410 -18.24640 -17.86433 -17.23371 -16.98493 -16.75118 -15.92770 -15.49910 -15.32766 -15.16945 -14.66732 -14.60224 -14.55797 -14.17563 -13.94233 -13.77270 -13.58846 -13.30886 -13.02843 -12.78955 -12.50524 -12.27560 -12.21621 -11.84712 -11.61428 -11.57706 -11.38348 -11.24298 -11.18925 -11.01718 -10.97597 -10.69328 -10.42989 -10.26607 -9.69718 -9.55270 -9.17605 -8.58829 -8.07801 -8.01330 -6.46935 -3.87737 1.95879 2.02799 2.37189 2.51730 3.12157 3.14647 3.24174 3.29327 3.56794 3.60147 3.70247 3.82384 4.05235 4.13073 4.14413 4.25070 4.47731 4.57092 4.67803 4.72689 4.85234 4.89744 4.99599 5.08307 5.18428 5.19457 5.38922 5.45272 5.51961 5.56284 5.62143 5.73484 5.82151 6.10684 6.16573 6.34765 6.77388 6.83417 6.93454 7.01021 7.50647 7.58260 7.74355 8.00390 8.55659 9.13388 9.47971 9.99676 10.70734 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003381 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.714654 B = 8280.768187 C =10124.900112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.574 6.574 12 C 0.035 3.965 13 N -0.487 5.487 14 C 0.040 3.960 15 C 0.110 3.890 16 H 0.128 0.872 17 C -0.130 4.130 18 C 0.054 3.946 19 H 0.137 0.863 20 C 0.052 3.948 21 N -0.618 5.618 22 C 0.520 3.480 23 O -0.520 6.520 24 C 0.080 3.920 25 H 0.126 0.874 26 C 0.055 3.945 27 O -0.319 6.319 28 C 0.652 3.348 29 O -0.517 6.517 30 N -0.711 5.711 31 H 0.272 0.728 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -19.244 -2.087 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.457 6.457 12 C -0.097 4.097 13 N -0.211 5.211 14 C -0.088 4.088 15 C 0.007 3.993 16 H 0.146 0.854 17 C -0.168 4.168 18 C -0.055 4.055 19 H 0.155 0.845 20 C -0.072 4.072 21 N -0.354 5.354 22 C 0.305 3.695 23 O -0.395 6.395 24 C -0.030 4.030 25 H 0.143 0.857 26 C -0.021 4.021 27 O -0.228 6.228 28 C 0.404 3.596 29 O -0.401 6.401 30 N -0.384 5.384 31 H 0.082 0.918 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -3.404 -18.784 -1.181 19.127 hybrid contribution -0.813 0.327 0.402 0.964 sum -4.217 -18.457 -0.779 18.949 Atomic orbital electron populations 1.69595 1.05921 1.28219 1.50577 1.25238 0.95625 0.99686 0.97244 0.85877 0.79282 0.80851 0.78417 1.20376 1.20908 1.19419 1.19681 0.93343 0.82166 1.47688 0.87953 1.41850 1.09070 1.04592 1.64676 1.19681 0.88465 0.84372 0.84799 1.90534 1.13616 1.86887 1.54680 1.22157 0.94218 0.91995 1.01284 1.64587 1.30923 1.01482 1.24065 1.23669 1.02494 0.93357 0.89299 1.24257 0.79982 0.97459 0.97601 0.85394 1.23912 1.01355 0.97679 0.93838 1.24790 0.91089 0.90699 0.98899 0.84500 1.23914 0.98225 1.01895 0.83117 1.49834 1.08250 1.69243 1.08085 1.20177 0.88954 0.77720 0.82606 1.90789 1.68320 1.47930 1.32440 1.22267 0.93155 0.95941 0.91660 0.85697 1.24331 0.98020 0.94220 0.85499 1.87391 1.70149 1.29693 1.35614 1.18433 0.78313 0.79375 0.83442 1.91094 1.50277 1.79019 1.19717 1.45666 1.56428 1.13971 1.22344 0.91841 0.77642 0.89186 0.93176 0.88579 0.91994 0.89752 0.88145 0.89551 0.90110 0.87054 0.85805 0.71678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 13.05 55.50 0.72 -22.91 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.37 5.29 -10.96 -0.06 -13.43 16 10 C 0.44 9.55 7.67 -10.99 -0.08 9.47 16 11 O -0.57 -14.69 15.58 5.55 0.09 -14.61 16 12 C 0.04 0.51 4.03 -4.98 -0.02 0.49 16 13 N -0.49 -6.34 4.80 -218.19 -1.05 -7.39 16 14 C 0.04 0.53 5.59 -1.45 -0.01 0.52 16 15 C 0.11 1.07 5.23 -62.57 -0.33 0.74 16 16 H 0.13 1.27 8.05 -51.93 -0.42 0.85 16 17 C -0.13 -0.95 6.82 -22.31 -0.15 -1.11 16 18 C 0.05 0.43 5.15 -62.32 -0.32 0.11 16 19 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 20 C 0.05 0.33 5.62 -0.50 0.00 0.33 16 21 N -0.62 -5.42 2.99 -155.10 -0.46 -5.89 16 22 C 0.52 5.31 7.01 -10.99 -0.08 5.24 16 23 O -0.52 -7.56 16.92 5.56 0.09 -7.46 16 24 C 0.08 0.59 3.59 -68.19 -0.24 0.34 16 25 H 0.13 0.44 7.72 -51.93 -0.40 0.04 16 26 C 0.05 0.44 7.89 37.72 0.30 0.73 16 27 O -0.32 -3.96 11.10 -37.83 -0.42 -4.38 16 28 C 0.65 8.63 9.16 53.71 0.49 9.12 16 29 O -0.52 -8.80 18.04 -19.12 -0.34 -9.14 16 30 N -0.71 -6.70 5.64 -59.36 -0.33 -7.04 16 31 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.39 8.73 7.90 -40.82 -0.32 8.40 16 33 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 34 H 0.05 0.64 6.17 -51.93 -0.32 0.32 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.55 5.53 -51.93 -0.29 0.26 16 40 H 0.08 0.28 8.03 -51.93 -0.42 -0.14 16 41 H 0.11 0.97 7.72 -51.93 -0.40 0.57 16 42 H 0.12 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.44 3.43 8.96 -40.82 -0.37 3.06 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -37.04 358.88 -7.42 -44.46 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.36 Total: 8.49 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: -0.69 Total: 18.33 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -1.18 Total: -56.64 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.58 Total: -35.59 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.04 -7.42 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.120 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds