Wall clock time and date at job start Tue Mar 31 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48507 * 109.47160 * 270.00035 * 3 2 1 5 5 H 1.48497 * 109.47401 * 30.00125 * 3 2 1 6 6 H 1.48507 * 109.47011 * 150.00466 * 3 2 1 7 7 C 1.38949 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00193 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99730 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00140 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00087 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47431 * 180.02562 * 12 10 9 14 14 C 1.48283 * 111.00118 * 78.76310 * 13 12 10 15 15 C 1.56013 * 105.06509 * 122.55075 * 14 13 12 16 16 H 1.09004 * 116.21796 * 159.74484 * 15 14 13 17 17 C 1.57064 * 99.68057 * 32.87298 * 15 14 13 18 18 C 1.49701 * 110.99887 * 196.36667 * 13 12 10 19 19 H 1.09003 * 116.16915 * 76.14649 * 18 13 12 20 20 C 1.56016 * 104.08647 * 306.98140 * 18 13 12 21 21 N 1.49281 * 104.12649 * 288.79425 * 15 14 13 22 22 C 1.34781 * 126.92852 * 246.92928 * 21 15 14 23 23 O 1.21282 * 120.00106 * 359.97438 * 22 21 15 24 24 C 1.50696 * 119.99946 * 179.97438 * 22 21 15 25 25 H 1.08991 * 110.50941 * 40.69844 * 24 22 21 26 26 C 1.54087 * 110.56440 * 277.95403 * 24 22 21 27 27 O 1.46043 * 103.84853 * 241.46874 * 26 24 22 28 28 C 1.33769 * 109.51037 * 359.88138 * 27 26 24 29 29 O 1.21511 * 123.07498 * 180.09899 * 28 27 26 30 30 N 1.34010 * 113.85712 * 0.08226 * 28 27 26 31 31 H 0.96996 * 119.99605 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00325 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47539 * 59.99011 * 12 10 9 34 34 H 1.09004 * 109.46573 * 299.99420 * 12 10 9 35 35 H 1.08999 * 110.32210 * 241.44332 * 14 13 12 36 36 H 1.08990 * 110.32271 * 3.54611 * 14 13 12 37 37 H 1.09007 * 113.08345 * 191.34111 * 17 15 14 38 38 H 1.08997 * 111.63222 * 63.93743 * 17 15 14 39 39 H 1.09000 * 110.31116 * 46.86483 * 20 18 13 40 40 H 1.09000 * 110.31488 * 169.04531 * 20 18 13 41 41 H 1.09004 * 110.52449 * 0.06185 * 26 24 22 42 42 H 1.09007 * 110.51961 * 122.80044 * 26 24 22 43 43 H 0.96996 * 125.56401 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 2.7477 -6.2081 1.3578 15 6 2.3999 -7.6920 1.6914 16 1 2.9935 -8.1610 2.4762 17 6 2.4936 -8.3151 0.2527 18 6 1.5280 -7.2586 -0.3947 19 1 1.3136 -7.3816 -1.4564 20 6 0.3081 -7.3618 0.5724 21 7 0.9222 -7.6813 1.9026 22 6 0.2678 -7.9062 3.0592 23 8 0.8907 -8.1490 4.0711 24 6 -1.2379 -7.8559 3.0951 25 1 -1.6571 -8.3293 2.2073 26 6 -1.7282 -6.4000 3.2147 27 8 -2.4548 -6.3788 4.4814 28 6 -2.4208 -7.5955 5.0364 29 8 -2.9520 -7.8552 6.0979 30 7 -1.7475 -8.5018 4.3145 31 1 -0.4849 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6173 -4.9205 -0.8912 34 1 0.6169 -4.9208 0.8887 35 1 3.8280 -6.0632 1.3586 36 1 2.2758 -5.5366 2.0750 37 1 2.0956 -9.3284 0.1990 38 1 3.5055 -8.2518 -0.1474 39 1 -0.2230 -6.4109 0.6144 40 1 -0.3638 -8.1575 0.2504 41 1 -0.8822 -5.7133 3.2470 42 1 -2.3922 -6.1512 2.3868 43 1 -1.6177 -9.4321 4.5564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753420221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:24 Heat of formation + Delta-G solvation = -110.934436 kcal Electronic energy + Delta-G solvation = -30299.637260 eV Core-core repulsion = 25959.802563 eV Total energy + Delta-G solvation = -4339.834696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.00397 -42.07547 -40.08090 -39.46055 -38.40006 -35.97929 -35.84033 -34.96225 -33.27254 -32.50382 -30.83048 -30.57376 -28.12343 -26.50755 -26.07697 -25.16610 -23.62042 -22.61315 -21.57333 -21.18232 -20.11870 -19.69318 -19.33715 -18.93154 -18.09847 -18.00774 -17.71809 -17.11275 -16.68474 -16.37868 -16.25617 -16.08544 -15.65595 -15.62363 -15.37143 -15.09825 -14.88606 -14.57590 -14.18911 -13.94316 -13.64897 -13.56287 -13.48331 -13.43983 -13.06330 -12.92594 -12.56766 -12.40220 -12.33619 -12.18629 -12.12992 -12.08489 -12.06273 -12.00921 -11.58929 -11.46760 -10.48535 -10.32103 -9.96325 -9.87456 -9.12494 -8.44567 -5.91787 1.19623 1.24021 1.38033 1.42382 1.53566 1.54981 1.70110 2.11759 2.29168 2.43883 2.71052 2.94685 3.03594 3.22805 3.35751 3.43314 3.58496 3.66429 3.71195 3.89002 3.96430 4.19347 4.24806 4.30656 4.34919 4.38600 4.56607 4.56940 4.60444 4.73172 4.80352 4.97352 5.00449 5.09893 5.16928 5.43445 5.59154 5.81746 5.90715 5.98517 6.11399 6.29787 6.65321 6.78710 6.89646 7.17741 7.62545 8.19775 8.72458 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.003381 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.714654 B = 8280.768187 C =10124.900112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.331 4.331 8 H 0.074 0.926 9 N -0.576 5.576 10 C 0.437 3.563 11 O -0.621 6.621 12 C 0.052 3.948 13 N -0.513 5.513 14 C 0.043 3.957 15 C 0.110 3.890 16 H 0.118 0.882 17 C -0.114 4.114 18 C 0.058 3.942 19 H 0.168 0.832 20 C 0.050 3.950 21 N -0.612 5.612 22 C 0.517 3.483 23 O -0.575 6.575 24 C 0.090 3.910 25 H 0.184 0.816 26 C 0.048 3.952 27 O -0.341 6.341 28 C 0.648 3.352 29 O -0.569 6.569 30 N -0.698 5.698 31 H 0.276 0.724 32 H 0.397 0.603 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.098 0.902 42 H 0.171 0.829 43 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -20.938 -4.622 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.209 4.209 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.461 4.461 8 H 0.092 0.908 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.506 6.506 12 C -0.079 4.079 13 N -0.238 5.238 14 C -0.086 4.086 15 C 0.006 3.994 16 H 0.136 0.864 17 C -0.152 4.152 18 C -0.049 4.049 19 H 0.185 0.815 20 C -0.071 4.071 21 N -0.346 5.346 22 C 0.304 3.696 23 O -0.454 6.454 24 C -0.019 4.019 25 H 0.200 0.800 26 C -0.027 4.027 27 O -0.251 6.251 28 C 0.401 3.599 29 O -0.456 6.456 30 N -0.370 5.370 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.116 0.884 42 H 0.189 0.811 43 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -5.369 -20.497 -3.794 21.526 hybrid contribution -0.062 0.847 1.121 1.406 sum -5.431 -19.650 -2.673 20.561 Atomic orbital electron populations 1.69638 1.06538 1.29104 1.50590 1.25885 0.96483 1.01981 0.96540 0.85052 0.77887 0.77538 0.78643 1.19548 1.19735 1.20223 1.19573 0.92499 0.84253 1.49739 0.90832 1.41911 1.09271 1.04595 1.65630 1.21059 0.88389 0.86211 0.81879 1.90505 1.16178 1.87981 1.55961 1.21993 0.93691 0.88406 1.03853 1.64435 1.32171 1.03569 1.23589 1.23467 1.00576 0.95304 0.89255 1.24116 0.80960 0.95121 0.99199 0.86398 1.23881 1.01342 0.98888 0.91100 1.25068 0.91542 0.87437 1.00841 0.81507 1.24174 0.97925 1.04243 0.80801 1.49860 1.07750 1.68092 1.08937 1.20700 0.90117 0.76782 0.82041 1.90777 1.69654 1.50550 1.34389 1.22569 0.90922 0.95877 0.92518 0.79959 1.24766 0.98481 0.94396 0.85017 1.87350 1.70643 1.29471 1.37599 1.18593 0.78280 0.79917 0.83124 1.91041 1.52613 1.80005 1.21984 1.45627 1.55005 1.13818 1.22575 0.91407 0.76907 0.85652 0.91037 0.91574 0.95119 0.86718 0.88862 0.88916 0.84979 0.88376 0.81111 0.70839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.66 13.05 21.66 0.28 -47.38 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 0.98 42.32 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 8 H 0.07 4.40 7.16 -2.91 -0.02 4.37 16 9 N -0.58 -27.59 5.29 -306.98 -1.62 -29.21 16 10 C 0.44 19.06 7.67 87.66 0.67 19.73 16 11 O -0.62 -32.97 15.58 -3.07 -0.05 -33.02 16 12 C 0.05 1.38 4.03 85.56 0.34 1.73 16 13 N -0.51 -12.41 4.80 -844.21 -4.05 -16.46 16 14 C 0.04 1.15 5.59 87.08 0.49 1.64 16 15 C 0.11 1.99 5.23 46.92 0.25 2.24 16 16 H 0.12 2.38 8.05 -2.39 -0.02 2.36 16 17 C -0.11 -1.28 6.82 33.46 0.23 -1.05 16 18 C 0.06 0.65 5.15 46.85 0.24 0.89 16 19 H 0.17 0.98 8.14 -2.39 -0.02 0.96 16 20 C 0.05 0.34 5.62 86.75 0.49 0.83 16 21 N -0.61 -8.75 2.99 -763.00 -2.28 -11.03 16 22 C 0.52 9.32 7.01 87.66 0.61 9.94 16 23 O -0.57 -16.58 16.92 -3.03 -0.05 -16.63 16 24 C 0.09 0.98 3.59 44.50 0.16 1.14 16 25 H 0.18 -0.03 7.72 -2.39 -0.02 -0.05 16 26 C 0.05 0.61 7.89 72.35 0.57 1.18 16 27 O -0.34 -8.12 11.10 -47.29 -0.52 -8.64 16 28 C 0.65 16.84 9.16 129.91 1.19 18.03 16 29 O -0.57 -19.84 18.04 19.65 0.35 -19.49 16 30 N -0.70 -11.79 5.64 -573.41 -3.24 -15.03 16 31 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 32 H 0.40 17.61 7.90 -92.71 -0.73 16.88 16 33 H 0.13 2.51 8.00 -2.39 -0.02 2.49 16 34 H 0.07 1.63 6.17 -2.38 -0.01 1.62 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.03 0.98 7.39 -2.39 -0.02 0.96 16 37 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 0.59 5.53 -2.39 -0.01 0.58 16 40 H 0.13 -0.26 8.03 -2.39 -0.02 -0.28 16 41 H 0.10 1.53 7.72 -2.39 -0.02 1.51 16 42 H 0.17 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.45 6.22 8.96 -92.71 -0.83 5.39 16 Total: -1.00 -88.89 358.88 -3.10 -91.99 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.47 Total: 21.68 kcal Atomic # 6 Polarization: 32.35 SS G_CDS: 6.52 Total: 38.88 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -10.91 Total: -119.12 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -0.27 Total: -77.78 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -88.89 -3.10 -91.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.941 kcal (2) G-P(sol) polarization free energy of solvation -88.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds