Wall clock time and date at job start Tue Mar 31 2020 20:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48501 * 109.46811 * 270.00278 * 3 2 1 5 5 H 1.48502 * 109.47183 * 29.99901 * 3 2 1 6 6 H 1.48492 * 109.46961 * 150.00128 * 3 2 1 7 7 C 1.38946 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99690 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00247 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99771 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00166 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.52266 * 111.67147 * 79.24587 * 13 12 10 15 15 C 1.56009 * 104.29279 * 122.36126 * 14 13 12 16 16 H 1.08999 * 116.21647 * 159.50950 * 15 14 13 17 17 C 1.57067 * 100.48150 * 32.88269 * 15 14 13 18 18 C 1.49714 * 111.00232 * 196.31766 * 13 12 10 19 19 H 1.08991 * 116.16291 * 75.28074 * 18 13 12 20 20 C 1.56019 * 104.08001 * 306.12073 * 18 13 12 21 21 N 1.47860 * 105.11780 * 287.95238 * 20 18 13 22 22 C 1.34768 * 126.92761 * 181.93768 * 21 20 18 23 23 O 1.21288 * 119.99892 * 179.97438 * 22 21 20 24 24 C 1.50703 * 120.00353 * 0.02562 * 22 21 20 25 25 H 1.09001 * 110.50123 * 317.25658 * 24 22 21 26 26 C 1.54084 * 110.56811 * 79.99757 * 24 22 21 27 27 O 1.45700 * 104.00822 * 118.57289 * 26 24 22 28 28 C 1.33768 * 109.47920 * 0.02562 * 27 26 24 29 29 O 1.21506 * 123.07544 * 179.97438 * 28 27 26 30 30 N 1.34011 * 113.85446 * 359.97438 * 28 27 26 31 31 H 0.97005 * 119.99759 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00129 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47494 * 60.00333 * 12 10 9 34 34 H 1.09002 * 109.47222 * 300.00148 * 12 10 9 35 35 H 1.09004 * 110.17889 * 3.97283 * 14 13 12 36 36 H 1.09006 * 111.21118 * 241.26624 * 14 13 12 37 37 H 1.09003 * 112.35689 * 64.74219 * 17 15 14 38 38 H 1.08999 * 112.35756 * 192.15151 * 17 15 14 39 39 H 1.09003 * 110.31129 * 169.04089 * 20 18 13 40 40 H 1.08996 * 110.31369 * 46.86577 * 20 18 13 41 41 H 1.08999 * 110.52230 * 237.21156 * 26 24 22 42 42 H 1.09005 * 110.51776 * 359.80475 * 26 24 22 43 43 H 0.96998 * 125.55241 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 -0.0001 13 7 6.0504 -3.7555 0.0007 14 6 5.9878 -4.3748 -1.3888 15 6 7.4581 -4.8037 -1.6859 16 1 7.5919 -5.5630 -2.4564 17 6 7.9438 -5.1796 -0.2403 18 6 7.4942 -3.8139 0.3924 19 1 7.7110 -3.6731 1.4512 20 6 8.1949 -2.8277 -0.5928 21 7 8.1772 -3.5135 -1.9026 22 6 8.7041 -3.0645 -3.0589 23 8 8.6172 -3.7352 -4.0658 24 6 9.4022 -1.7296 -3.1008 25 1 8.8404 -0.9870 -2.5341 26 6 10.8385 -1.8526 -2.5567 27 8 11.6772 -1.4720 -3.6857 28 6 10.9034 -1.1690 -4.7340 29 8 11.3498 -0.8179 -5.8081 30 7 9.5909 -1.2882 -4.4911 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 -0.0011 33 1 5.9248 -1.8555 0.8889 34 1 5.9234 -1.8578 -0.8911 35 1 5.6552 -3.6341 -2.1161 36 1 5.3296 -5.2436 -1.4041 37 1 7.4075 -6.0364 0.1675 38 1 9.0245 -5.3108 -0.1870 39 1 9.2215 -2.6424 -0.2765 40 1 7.6405 -1.8909 -0.6487 41 1 10.9902 -1.1698 -1.7206 42 1 11.0455 -2.8788 -2.2530 43 1 8.8811 -1.1115 -5.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753420222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:29 Heat of formation + Delta-G solvation = -70.720343 kcal Electronic energy + Delta-G solvation = -30115.327609 eV Core-core repulsion = 25777.236727 eV Total energy + Delta-G solvation = -4338.090882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32890 -41.28878 -39.03695 -38.13804 -37.50746 -35.13551 -34.39843 -33.82338 -31.93847 -31.57073 -30.09311 -29.96972 -26.89353 -25.88921 -24.85176 -23.98239 -22.84689 -21.84617 -20.88546 -19.79934 -19.22869 -18.66600 -18.52660 -18.01580 -17.50073 -17.02325 -16.73562 -16.08297 -15.62892 -15.35480 -15.25786 -14.91531 -14.78493 -14.66281 -14.23117 -14.11942 -13.81300 -13.54780 -13.20362 -12.99158 -12.92427 -12.65870 -12.54221 -12.40903 -12.04614 -11.95766 -11.63167 -11.47470 -11.38599 -11.34331 -11.12819 -11.10385 -10.78249 -10.67802 -10.04440 -9.78179 -9.63738 -9.24599 -8.71441 -8.25402 -8.19243 -6.37211 -3.89094 1.85946 1.96354 2.25002 2.43096 2.93714 2.98958 3.01244 3.08558 3.42741 3.46972 3.62755 3.64780 3.96637 4.03074 4.04425 4.11962 4.38882 4.41355 4.59363 4.61171 4.62675 4.77372 4.80043 4.93639 5.12976 5.14333 5.31340 5.33507 5.44334 5.47043 5.48901 5.66554 5.73243 5.83417 6.02560 6.27952 6.53879 6.71901 6.79922 6.94191 7.49506 7.50965 7.64547 8.07346 8.53189 8.88990 9.35263 9.75932 10.75965 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003226 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.972718 B = 8676.757596 C =10186.130073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.452 3.548 11 O -0.555 6.555 12 C 0.033 3.967 13 N -0.487 5.487 14 C 0.040 3.960 15 C 0.109 3.891 16 H 0.128 0.872 17 C -0.129 4.129 18 C 0.054 3.946 19 H 0.138 0.862 20 C 0.050 3.950 21 N -0.616 5.616 22 C 0.521 3.479 23 O -0.517 6.517 24 C 0.078 3.922 25 H 0.127 0.873 26 C 0.057 3.943 27 O -0.322 6.322 28 C 0.652 3.348 29 O -0.515 6.515 30 N -0.710 5.710 31 H 0.274 0.726 32 H 0.369 0.631 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.501 -3.032 1.549 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.237 3.763 11 O -0.436 6.436 12 C -0.099 4.099 13 N -0.211 5.211 14 C -0.088 4.088 15 C 0.006 3.994 16 H 0.146 0.854 17 C -0.167 4.167 18 C -0.055 4.055 19 H 0.156 0.844 20 C -0.074 4.074 21 N -0.352 5.352 22 C 0.306 3.694 23 O -0.392 6.392 24 C -0.032 4.032 25 H 0.144 0.856 26 C -0.019 4.019 27 O -0.232 6.232 28 C 0.404 3.596 29 O -0.399 6.399 30 N -0.382 5.382 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 22.143 -4.055 0.831 22.526 hybrid contribution 0.400 2.157 -0.639 2.285 sum 22.543 -1.898 0.192 22.623 Atomic orbital electron populations 1.69622 1.05642 1.27522 1.49269 1.25039 0.95481 0.97940 0.97691 0.86681 0.79747 0.84166 0.78797 1.19724 1.20116 1.19571 1.19412 0.79171 0.96620 1.48163 0.86285 1.42202 1.07538 1.06022 1.67468 1.19582 0.87874 0.84610 0.84254 1.90575 1.69207 1.30849 1.52923 1.22146 0.96231 0.90160 1.01392 1.65620 1.14563 1.17127 1.23740 1.24336 0.94334 1.01165 0.88943 1.24233 0.92032 0.85454 0.97653 0.85385 1.23918 1.01310 0.97763 0.93741 1.24779 0.87967 0.94017 0.98729 0.84424 1.23540 1.02129 0.97917 0.83812 1.49311 1.56022 1.21456 1.08373 1.20147 0.79305 0.87285 0.82639 1.90797 1.58020 1.57544 1.32820 1.22282 0.98578 0.96411 0.85952 0.85594 1.24209 0.84535 1.04430 0.88696 1.87305 1.33156 1.80731 1.22003 1.18392 0.80652 0.76721 0.83821 1.91106 1.76285 1.51373 1.21133 1.45685 1.07910 1.71129 1.13506 0.91567 0.79902 0.89043 0.93037 0.91819 0.88207 0.87919 0.89803 0.90515 0.89852 0.86102 0.87246 0.71350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.96 55.50 0.77 -24.36 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.50 27.74 -169.99 -4.71 13.78 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 7 C -0.31 -8.30 10.16 -14.94 -0.15 -8.45 16 8 H 0.12 3.74 7.39 -52.48 -0.39 3.35 16 9 N -0.59 -13.19 5.09 -10.97 -0.06 -13.24 16 10 C 0.45 9.40 7.70 -10.99 -0.08 9.32 16 11 O -0.55 -14.05 15.65 5.55 0.09 -13.96 16 12 C 0.03 0.45 4.13 -4.98 -0.02 0.42 16 13 N -0.49 -6.02 4.87 -214.61 -1.04 -7.06 16 14 C 0.04 0.49 5.91 0.85 0.01 0.50 16 15 C 0.11 0.98 5.17 -62.57 -0.32 0.65 16 16 H 0.13 1.18 8.06 -51.93 -0.42 0.76 16 17 C -0.13 -0.86 6.83 -22.31 -0.15 -1.01 16 18 C 0.05 0.39 5.14 -62.31 -0.32 0.07 16 19 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 20 C 0.05 0.28 5.47 -1.68 -0.01 0.27 16 21 N -0.62 -4.93 2.93 -156.81 -0.46 -5.39 16 22 C 0.52 4.92 7.02 -10.99 -0.08 4.85 16 23 O -0.52 -7.14 16.91 5.55 0.09 -7.04 16 24 C 0.08 0.52 3.57 -68.19 -0.24 0.27 16 25 H 0.13 0.49 7.89 -51.93 -0.41 0.08 16 26 C 0.06 0.29 7.87 37.72 0.30 0.59 16 27 O -0.32 -3.19 11.09 -37.82 -0.42 -3.61 16 28 C 0.65 7.80 9.16 53.71 0.49 8.29 16 29 O -0.52 -8.23 18.04 -19.11 -0.34 -8.58 16 30 N -0.71 -6.50 5.63 -59.36 -0.33 -6.83 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.37 7.08 5.76 -40.82 -0.24 6.85 16 33 H 0.09 1.01 8.00 -51.93 -0.42 0.60 16 34 H 0.05 0.61 6.22 -51.93 -0.32 0.29 16 35 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.47 5.55 -51.93 -0.29 0.19 16 41 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.11 0.46 7.72 -51.93 -0.40 0.05 16 43 H 0.44 3.74 8.96 -40.82 -0.37 3.38 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -38.44 356.48 -7.07 -45.51 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.34 Total: 8.65 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -0.68 Total: 16.78 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -1.12 Total: -56.89 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.58 Total: -33.19 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.71 Total: 13.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.44 -7.07 -45.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -38.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds