Wall clock time and date at job start Tue Mar 31 2020 20:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48501 * 109.46811 * 270.00278 * 3 2 1 5 5 H 1.48502 * 109.47183 * 29.99901 * 3 2 1 6 6 H 1.48492 * 109.46961 * 150.00128 * 3 2 1 7 7 C 1.38946 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99690 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00247 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99771 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00166 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.52266 * 111.67147 * 79.24587 * 13 12 10 15 15 C 1.56009 * 104.29279 * 122.36126 * 14 13 12 16 16 H 1.08999 * 116.21647 * 159.50950 * 15 14 13 17 17 C 1.57067 * 100.48150 * 32.88269 * 15 14 13 18 18 C 1.49714 * 111.00232 * 196.31766 * 13 12 10 19 19 H 1.08991 * 116.16291 * 75.28074 * 18 13 12 20 20 C 1.56019 * 104.08001 * 306.12073 * 18 13 12 21 21 N 1.47860 * 105.11780 * 287.95238 * 20 18 13 22 22 C 1.34768 * 126.92761 * 181.93768 * 21 20 18 23 23 O 1.21288 * 119.99892 * 179.97438 * 22 21 20 24 24 C 1.50703 * 120.00353 * 0.02562 * 22 21 20 25 25 H 1.09001 * 110.50123 * 317.25658 * 24 22 21 26 26 C 1.54084 * 110.56811 * 79.99757 * 24 22 21 27 27 O 1.45700 * 104.00822 * 118.57289 * 26 24 22 28 28 C 1.33768 * 109.47920 * 0.02562 * 27 26 24 29 29 O 1.21506 * 123.07544 * 179.97438 * 28 27 26 30 30 N 1.34011 * 113.85446 * 359.97438 * 28 27 26 31 31 H 0.97005 * 119.99759 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00129 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47494 * 60.00333 * 12 10 9 34 34 H 1.09002 * 109.47222 * 300.00148 * 12 10 9 35 35 H 1.09004 * 110.17889 * 3.97283 * 14 13 12 36 36 H 1.09006 * 111.21118 * 241.26624 * 14 13 12 37 37 H 1.09003 * 112.35689 * 64.74219 * 17 15 14 38 38 H 1.08999 * 112.35756 * 192.15151 * 17 15 14 39 39 H 1.09003 * 110.31129 * 169.04089 * 20 18 13 40 40 H 1.08996 * 110.31369 * 46.86577 * 20 18 13 41 41 H 1.08999 * 110.52230 * 237.21156 * 26 24 22 42 42 H 1.09005 * 110.51776 * 359.80475 * 26 24 22 43 43 H 0.96998 * 125.55241 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 -0.0001 13 7 6.0504 -3.7555 0.0007 14 6 5.9878 -4.3748 -1.3888 15 6 7.4581 -4.8037 -1.6859 16 1 7.5919 -5.5630 -2.4564 17 6 7.9438 -5.1796 -0.2403 18 6 7.4942 -3.8139 0.3924 19 1 7.7110 -3.6731 1.4512 20 6 8.1949 -2.8277 -0.5928 21 7 8.1772 -3.5135 -1.9026 22 6 8.7041 -3.0645 -3.0589 23 8 8.6172 -3.7352 -4.0658 24 6 9.4022 -1.7296 -3.1008 25 1 8.8404 -0.9870 -2.5341 26 6 10.8385 -1.8526 -2.5567 27 8 11.6772 -1.4720 -3.6857 28 6 10.9034 -1.1690 -4.7340 29 8 11.3498 -0.8179 -5.8081 30 7 9.5909 -1.2882 -4.4911 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 -0.0011 33 1 5.9248 -1.8555 0.8889 34 1 5.9234 -1.8578 -0.8911 35 1 5.6552 -3.6341 -2.1161 36 1 5.3296 -5.2436 -1.4041 37 1 7.4075 -6.0364 0.1675 38 1 9.0245 -5.3108 -0.1870 39 1 9.2215 -2.6424 -0.2765 40 1 7.6405 -1.8909 -0.6487 41 1 10.9902 -1.1698 -1.7206 42 1 11.0455 -2.8788 -2.2530 43 1 8.8811 -1.1115 -5.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753420222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:28 Heat of formation + Delta-G solvation = -106.836037 kcal Electronic energy + Delta-G solvation = -30116.893703 eV Core-core repulsion = 25777.236727 eV Total energy + Delta-G solvation = -4339.656976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.00231 -42.01764 -40.16742 -39.50208 -38.38776 -36.02336 -35.82325 -34.97805 -33.73173 -32.57443 -30.76989 -30.57271 -28.23275 -26.47088 -25.93168 -25.13480 -23.59760 -22.59704 -21.55965 -21.29361 -20.51683 -19.80164 -19.30974 -18.84558 -18.23539 -17.87592 -17.71312 -17.01018 -16.85445 -16.58974 -16.26413 -16.02597 -15.68613 -15.36665 -15.31202 -14.97163 -14.86211 -14.58118 -14.42125 -14.09428 -13.89131 -13.63678 -13.62366 -13.42038 -13.09604 -12.96215 -12.58861 -12.39389 -12.30591 -12.12877 -12.09074 -12.07928 -11.96851 -11.94949 -11.57631 -11.47767 -10.49719 -10.39999 -10.21940 -9.86320 -9.14919 -8.39289 -6.00315 1.17620 1.29828 1.29922 1.37349 1.46335 1.55024 1.73502 2.01802 2.25083 2.47904 2.53773 2.98573 3.06259 3.16838 3.20039 3.40584 3.57560 3.64706 3.71817 3.95853 3.98035 4.15812 4.19743 4.31178 4.37957 4.40541 4.47533 4.54595 4.59956 4.72967 4.82603 4.96462 5.00480 5.09822 5.17755 5.54460 5.55857 5.66867 5.91607 6.02125 6.03979 6.33042 6.62814 6.78736 6.89430 6.92332 7.44085 8.03608 8.78799 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.003226 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.972718 B = 8676.757596 C =10186.130073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.019 4.019 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.221 1.221 7 C -0.326 4.326 8 H 0.050 0.950 9 N -0.594 5.594 10 C 0.448 3.552 11 O -0.611 6.611 12 C 0.049 3.951 13 N -0.517 5.517 14 C 0.040 3.960 15 C 0.109 3.891 16 H 0.116 0.884 17 C -0.116 4.116 18 C 0.059 3.941 19 H 0.170 0.830 20 C 0.047 3.953 21 N -0.609 5.609 22 C 0.517 3.483 23 O -0.574 6.574 24 C 0.082 3.918 25 H 0.168 0.832 26 C 0.054 3.946 27 O -0.335 6.335 28 C 0.650 3.350 29 O -0.571 6.571 30 N -0.706 5.706 31 H 0.278 0.722 32 H 0.390 0.610 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.173 0.827 42 H 0.122 0.878 43 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.938 -0.420 4.177 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.217 4.217 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.144 1.144 7 C -0.456 4.456 8 H 0.068 0.932 9 N -0.237 5.237 10 C 0.236 3.764 11 O -0.494 6.494 12 C -0.083 4.083 13 N -0.242 5.242 14 C -0.088 4.088 15 C 0.005 3.995 16 H 0.134 0.866 17 C -0.154 4.154 18 C -0.048 4.048 19 H 0.187 0.813 20 C -0.075 4.075 21 N -0.343 5.343 22 C 0.305 3.695 23 O -0.453 6.453 24 C -0.027 4.027 25 H 0.186 0.814 26 C -0.020 4.020 27 O -0.245 6.245 28 C 0.403 3.597 29 O -0.459 6.459 30 N -0.377 5.377 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.153 0.847 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.190 0.810 42 H 0.140 0.860 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 26.609 -1.460 3.541 26.883 hybrid contribution -1.113 1.087 -1.381 2.080 sum 25.496 -0.374 2.160 25.590 Atomic orbital electron populations 1.69826 1.08357 1.29179 1.50701 1.26173 0.96460 1.02920 0.96186 0.85353 0.79872 0.76425 0.79758 1.18559 1.20388 1.14360 1.18964 0.81782 0.94675 1.50152 0.93157 1.42024 1.05579 1.07687 1.68385 1.21162 0.91312 0.83128 0.80838 1.90557 1.71500 1.32969 1.54392 1.22044 0.89822 0.91788 1.04616 1.65455 1.18941 1.16556 1.23211 1.24143 0.96253 0.99361 0.89044 1.24064 0.90050 0.86152 0.99213 0.86605 1.23896 1.02864 0.97542 0.91118 1.25047 0.84322 0.94676 1.00741 0.81306 1.23810 1.05227 0.97021 0.81452 1.49327 1.54747 1.21026 1.09247 1.20707 0.78906 0.87885 0.82042 1.90786 1.60332 1.59283 1.34868 1.22610 0.99994 0.95287 0.84795 0.81443 1.24773 0.82300 1.06760 0.88132 1.87270 1.34057 1.80436 1.22722 1.18517 0.81304 0.76220 0.83639 1.91051 1.77389 1.53913 1.23497 1.45738 1.07000 1.70042 1.14957 0.91291 0.77479 0.84697 0.90262 0.94595 0.91434 0.88835 0.86764 0.85299 0.88840 0.80963 0.86044 0.71375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.06 13.96 21.66 0.30 -55.75 16 2 C -0.02 -1.05 5.50 84.92 0.47 -0.58 16 3 Si 0.97 36.67 27.74 68.60 1.90 38.58 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.22 -6.58 6.52 99.48 0.65 -5.93 16 7 C -0.33 -18.56 10.16 84.04 0.85 -17.70 16 8 H 0.05 3.47 7.39 -2.91 -0.02 3.45 16 9 N -0.59 -26.03 5.09 -306.99 -1.56 -27.60 16 10 C 0.45 18.49 7.70 87.66 0.67 19.17 16 11 O -0.61 -32.49 15.65 -3.07 -0.05 -32.54 16 12 C 0.05 1.14 4.13 85.56 0.35 1.49 16 13 N -0.52 -11.48 4.87 -832.90 -4.05 -15.54 16 14 C 0.04 1.00 5.91 86.28 0.51 1.51 16 15 C 0.11 1.80 5.17 46.92 0.24 2.04 16 16 H 0.12 2.19 8.06 -2.39 -0.02 2.17 16 17 C -0.12 -1.12 6.83 33.46 0.23 -0.89 16 18 C 0.06 0.53 5.14 46.85 0.24 0.77 16 19 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 20 C 0.05 0.20 5.47 87.16 0.48 0.68 16 21 N -0.61 -7.38 2.93 -768.41 -2.25 -9.64 16 22 C 0.52 8.26 7.02 87.66 0.62 8.88 16 23 O -0.57 -15.58 16.91 -3.05 -0.05 -15.63 16 24 C 0.08 0.71 3.57 44.50 0.16 0.87 16 25 H 0.17 0.13 7.89 -2.39 -0.02 0.11 16 26 C 0.05 0.25 7.87 72.35 0.57 0.82 16 27 O -0.34 -5.68 11.09 -47.28 -0.52 -6.20 16 28 C 0.65 14.78 9.16 129.91 1.19 15.97 16 29 O -0.57 -18.51 18.04 19.66 0.35 -18.16 16 30 N -0.71 -11.54 5.63 -573.42 -3.23 -14.77 16 31 H 0.28 15.15 8.31 -92.70 -0.77 14.38 16 32 H 0.39 13.55 5.76 -92.71 -0.53 13.01 16 33 H 0.14 2.07 8.00 -2.39 -0.02 2.06 16 34 H 0.08 1.47 6.22 -2.39 -0.01 1.46 16 35 H 0.04 1.06 7.51 -2.38 -0.02 1.04 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.09 0.31 5.55 -2.39 -0.01 0.29 16 41 H 0.17 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.12 0.31 7.72 -2.38 -0.02 0.29 16 43 H 0.44 7.09 8.96 -92.71 -0.83 6.26 16 Total: -1.00 -98.85 356.48 -2.92 -101.77 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.33 Total: 22.45 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: 6.58 Total: 33.03 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -10.80 Total: -123.29 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -0.27 Total: -72.53 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 1.90 Total: 38.58 kcal Total: -98.85 -2.92 -101.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753420222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.067 kcal (2) G-P(sol) polarization free energy of solvation -98.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds