Wall clock time and date at job start Tue Mar 31 2020 20:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48501 * 109.46936 * 240.00058 * 3 2 1 5 5 H 1.48505 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47263 * 120.00035 * 3 2 1 7 7 C 1.38952 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00419 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99628 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00442 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47341 * 179.97438 * 12 10 9 14 14 C 1.48542 * 110.99572 * 307.39974 * 13 12 10 15 15 C 1.54937 * 103.22045 * 200.27842 * 14 13 12 16 16 C 1.54593 * 102.92627 * 37.41027 * 15 14 13 17 17 O 1.42906 * 110.38872 * 96.99948 * 16 15 14 18 18 C 1.52997 * 110.31110 * 219.12472 * 16 15 14 19 19 N 1.46497 * 109.47295 * 300.71591 * 18 16 15 20 20 C 1.34777 * 119.99979 * 179.97438 * 19 18 16 21 21 O 1.21606 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.47425 * 119.99783 * 180.02562 * 20 19 18 23 23 C 1.36096 * 126.44334 * 180.02562 * 22 20 19 24 24 O 1.34261 * 106.94281 * 179.97438 * 23 22 20 25 25 C 1.34050 * 108.22996 * 0.02562 * 24 23 22 26 26 N 1.29933 * 109.24333 * 0.26514 * 25 24 23 27 27 C 1.47890 * 111.00154 * 190.00199 * 13 12 10 28 28 H 0.96997 * 119.99917 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00451 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47219 * 60.00459 * 12 10 9 31 31 H 1.08994 * 109.47074 * 300.00018 * 12 10 9 32 32 H 1.08996 * 110.66744 * 318.71069 * 14 13 12 33 33 H 1.09000 * 110.66526 * 81.67836 * 14 13 12 34 34 H 1.09010 * 110.72507 * 279.05089 * 15 14 13 35 35 H 1.09001 * 110.72383 * 155.77475 * 15 14 13 36 36 H 0.96700 * 113.99656 * 62.84997 * 17 16 15 37 37 H 1.08998 * 109.46917 * 180.71682 * 18 16 15 38 38 H 1.08996 * 109.46998 * 60.71854 * 18 16 15 39 39 H 0.96999 * 120.00141 * 0.02562 * 19 18 16 40 40 H 1.07993 * 126.52820 * 0.02562 * 23 22 20 41 41 H 1.08002 * 125.37508 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.91874 * 26.48837 * 27 13 12 43 43 H 1.08999 * 109.91790 * 265.19184 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 3.1845 -5.8363 -1.1033 15 6 3.7284 -7.2760 -1.2815 16 6 2.4739 -8.1503 -1.0538 17 8 1.8835 -8.5094 -2.3047 18 6 2.8387 -9.4061 -0.2596 19 7 3.8464 -10.1736 -0.9955 20 6 4.3216 -11.3264 -0.4839 21 8 3.9136 -11.7296 0.5884 22 6 5.3361 -12.0985 -1.2242 23 6 5.9029 -13.2724 -0.8331 24 8 6.7692 -13.6283 -1.7952 25 6 6.7360 -12.6939 -2.7558 26 7 5.8863 -11.7686 -2.4241 27 6 1.5094 -7.2658 -0.2420 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6175 -4.9205 -0.8914 31 1 0.6168 -4.9209 0.8886 32 1 2.6954 -5.4941 -2.0153 33 1 3.9841 -5.1529 -0.8173 34 1 4.4919 -7.4952 -0.5350 35 1 4.1201 -7.4184 -2.2886 36 1 2.4544 -9.0495 -2.8682 37 1 1.9478 -10.0179 -0.1180 38 1 3.2396 -9.1178 0.7120 39 1 4.1721 -9.8519 -1.8506 40 1 5.6949 -13.8148 0.0773 41 1 7.3262 -12.7059 -3.6603 42 1 0.5942 -7.0965 -0.8094 43 1 1.2767 -7.7458 0.7086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754745851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:18 Heat of formation + Delta-G solvation = -77.231621 kcal Electronic energy + Delta-G solvation = -28625.341847 eV Core-core repulsion = 24286.968614 eV Total energy + Delta-G solvation = -4338.373232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.92611 -40.37542 -39.32721 -38.07081 -35.89398 -35.37818 -34.52744 -33.89191 -31.53965 -31.13595 -30.80316 -29.33333 -27.35834 -25.64398 -24.20640 -23.65847 -23.12495 -21.61641 -20.80750 -20.41322 -19.26531 -19.08429 -17.90394 -17.30671 -17.24292 -16.81322 -16.24244 -15.95055 -15.67863 -15.50477 -15.24460 -15.04962 -14.52130 -14.41954 -14.15971 -13.99747 -13.81678 -13.58898 -13.29245 -13.01606 -12.68737 -12.28797 -11.90001 -11.85974 -11.66164 -11.54288 -11.39218 -11.19309 -11.15189 -10.97830 -10.84868 -10.54968 -10.44824 -10.22546 -10.05445 -9.74327 -9.48387 -9.40714 -8.39920 -8.03507 -7.91845 -6.42436 -3.83414 0.63080 1.54307 2.16318 2.69679 2.90553 3.19549 3.25556 3.29685 3.51591 3.76944 3.88671 4.15121 4.25317 4.33078 4.34644 4.41919 4.56627 4.71893 4.98753 5.06978 5.10042 5.24349 5.26553 5.42754 5.46732 5.57593 5.59295 5.70102 5.77003 5.79065 5.93386 5.96682 6.03132 6.23523 6.26655 6.62718 6.81721 7.11349 7.15107 7.24414 7.40647 7.54359 7.75702 8.04635 8.60400 9.16702 9.52580 10.04132 10.75078 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.001882 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.449253 B =14877.668201 C =15310.325582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.036 3.964 13 N -0.492 5.492 14 C 0.042 3.958 15 C -0.153 4.153 16 C 0.112 3.888 17 O -0.550 6.550 18 C 0.101 3.899 19 N -0.710 5.710 20 C 0.603 3.397 21 O -0.533 6.533 22 C -0.076 4.076 23 C 0.019 3.981 24 O -0.199 6.199 25 C 0.182 3.818 26 N -0.467 5.467 27 C 0.048 3.952 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.372 0.628 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.407 0.593 40 H 0.231 0.769 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -26.264 -6.115 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.228 3.772 11 O -0.467 6.467 12 C -0.096 4.096 13 N -0.217 5.217 14 C -0.085 4.085 15 C -0.191 4.191 16 C 0.070 3.930 17 O -0.356 6.356 18 C -0.023 4.023 19 N -0.362 5.362 20 C 0.388 3.612 21 O -0.410 6.410 22 C -0.196 4.196 23 C -0.055 4.055 24 O -0.084 6.084 25 C -0.047 4.047 26 N -0.197 5.197 27 C -0.080 4.080 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.242 0.758 40 H 0.248 0.752 41 H 0.272 0.728 42 H 0.081 0.919 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.181 -25.458 -4.942 27.193 hybrid contribution 0.072 0.155 -1.139 1.152 sum 8.254 -25.303 -6.082 27.301 Atomic orbital electron populations 1.69607 1.05939 1.28312 1.50313 1.25279 0.95648 0.99764 0.97252 0.85906 0.78750 0.80419 0.79061 1.19929 1.20977 1.19866 1.19648 0.93335 0.82179 1.47787 0.87925 1.41839 1.09233 1.04549 1.64025 1.19676 0.88331 0.84647 0.84575 1.90431 1.13719 1.86737 1.55806 1.22122 0.94561 0.91094 1.01828 1.64727 1.13129 0.99862 1.43966 1.23438 0.97490 0.95549 0.92010 1.23307 0.96961 0.96699 1.02140 1.22327 0.93954 0.92454 0.84274 1.86634 1.45744 1.73984 1.29199 1.22193 0.91679 0.92138 0.96257 1.45713 1.42671 1.22966 1.24856 1.16699 0.79951 0.80406 0.84113 1.90854 1.59481 1.69541 1.21117 1.21789 1.04545 0.98056 0.95170 1.25356 0.89982 0.96475 0.93714 1.84466 1.50651 1.46326 1.26971 1.28171 0.98722 0.83085 0.94743 1.70756 1.09862 1.27095 1.11976 1.22831 0.95847 0.90691 0.98678 0.91783 0.77402 0.93068 0.89013 0.94199 0.86129 0.89835 0.90705 0.78019 0.90178 0.89340 0.75758 0.75249 0.72819 0.91921 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 10 C 0.44 10.40 7.49 -10.99 -0.08 10.32 16 11 O -0.58 -15.30 13.09 5.54 0.07 -15.23 16 12 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 13 N -0.49 -8.30 5.26 -231.89 -1.22 -9.52 16 14 C 0.04 0.71 5.31 -1.89 -0.01 0.70 16 15 C -0.15 -1.89 5.64 -24.87 -0.14 -2.03 16 16 C 0.11 1.27 1.05 -89.27 -0.09 1.18 16 17 O -0.55 -6.12 12.95 -35.23 -0.46 -6.58 16 18 C 0.10 1.06 4.50 -4.04 -0.02 1.05 16 19 N -0.71 -6.81 5.11 -61.39 -0.31 -7.12 16 20 C 0.60 6.62 7.81 -12.52 -0.10 6.52 16 21 O -0.53 -7.31 16.89 5.27 0.09 -7.22 16 22 C -0.08 -0.68 6.99 -83.02 -0.58 -1.26 16 23 C 0.02 0.13 11.95 29.96 0.36 0.48 16 24 O -0.20 -1.14 10.73 6.50 0.07 -1.07 16 25 C 0.18 0.86 13.19 51.96 0.69 1.55 16 26 N -0.47 -3.69 11.06 -11.48 -0.13 -3.82 16 27 C 0.05 0.65 6.18 -2.76 -0.02 0.63 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 30 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.04 0.70 8.02 -51.93 -0.42 0.29 16 33 H 0.12 2.42 5.96 -51.93 -0.31 2.11 16 34 H 0.08 1.04 7.86 -51.92 -0.41 0.64 16 35 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.37 2.86 8.14 45.56 0.37 3.23 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 3.33 7.06 -40.82 -0.29 3.04 16 40 H 0.23 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.26 -0.06 8.06 -52.49 -0.42 -0.49 16 42 H 0.06 0.86 7.39 -51.93 -0.38 0.47 16 43 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -35.03 367.01 -5.58 -40.61 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.61 Total: 14.66 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.27 Total: 11.78 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.99 Total: -58.49 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.22 Total: -30.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.03 -5.58 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754745851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.623 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds