Wall clock time and date at job start Tue Mar 31 2020 20:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 119.99783 * 2 1 4 4 H 1.48501 * 109.46936 * 240.00058 * 3 2 1 5 5 H 1.48505 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47263 * 120.00035 * 3 2 1 7 7 C 1.38952 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00419 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99628 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00442 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47341 * 179.97438 * 12 10 9 14 14 C 1.48542 * 110.99572 * 307.39974 * 13 12 10 15 15 C 1.54937 * 103.22045 * 200.27842 * 14 13 12 16 16 C 1.54593 * 102.92627 * 37.41027 * 15 14 13 17 17 O 1.42906 * 110.38872 * 96.99948 * 16 15 14 18 18 C 1.52997 * 110.31110 * 219.12472 * 16 15 14 19 19 N 1.46497 * 109.47295 * 300.71591 * 18 16 15 20 20 C 1.34777 * 119.99979 * 179.97438 * 19 18 16 21 21 O 1.21606 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.47425 * 119.99783 * 180.02562 * 20 19 18 23 23 C 1.36096 * 126.44334 * 180.02562 * 22 20 19 24 24 O 1.34261 * 106.94281 * 179.97438 * 23 22 20 25 25 C 1.34050 * 108.22996 * 0.02562 * 24 23 22 26 26 N 1.29933 * 109.24333 * 0.26514 * 25 24 23 27 27 C 1.47890 * 111.00154 * 190.00199 * 13 12 10 28 28 H 0.96997 * 119.99917 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00451 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47219 * 60.00459 * 12 10 9 31 31 H 1.08994 * 109.47074 * 300.00018 * 12 10 9 32 32 H 1.08996 * 110.66744 * 318.71069 * 14 13 12 33 33 H 1.09000 * 110.66526 * 81.67836 * 14 13 12 34 34 H 1.09010 * 110.72507 * 279.05089 * 15 14 13 35 35 H 1.09001 * 110.72383 * 155.77475 * 15 14 13 36 36 H 0.96700 * 113.99656 * 62.84997 * 17 16 15 37 37 H 1.08998 * 109.46917 * 180.71682 * 18 16 15 38 38 H 1.08996 * 109.46998 * 60.71854 * 18 16 15 39 39 H 0.96999 * 120.00141 * 0.02562 * 19 18 16 40 40 H 1.07993 * 126.52820 * 0.02562 * 23 22 20 41 41 H 1.08002 * 125.37508 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.91874 * 26.48837 * 27 13 12 43 43 H 1.08999 * 109.91790 * 265.19184 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 3.1845 -5.8363 -1.1033 15 6 3.7284 -7.2760 -1.2815 16 6 2.4739 -8.1503 -1.0538 17 8 1.8835 -8.5094 -2.3047 18 6 2.8387 -9.4061 -0.2596 19 7 3.8464 -10.1736 -0.9955 20 6 4.3216 -11.3264 -0.4839 21 8 3.9136 -11.7296 0.5884 22 6 5.3361 -12.0985 -1.2242 23 6 5.9029 -13.2724 -0.8331 24 8 6.7692 -13.6283 -1.7952 25 6 6.7360 -12.6939 -2.7558 26 7 5.8863 -11.7686 -2.4241 27 6 1.5094 -7.2658 -0.2420 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6175 -4.9205 -0.8914 31 1 0.6168 -4.9209 0.8886 32 1 2.6954 -5.4941 -2.0153 33 1 3.9841 -5.1529 -0.8173 34 1 4.4919 -7.4952 -0.5350 35 1 4.1201 -7.4184 -2.2886 36 1 2.4544 -9.0495 -2.8682 37 1 1.9478 -10.0179 -0.1180 38 1 3.2396 -9.1178 0.7120 39 1 4.1721 -9.8519 -1.8506 40 1 5.6949 -13.8148 0.0773 41 1 7.3262 -12.7059 -3.6603 42 1 0.5942 -7.0965 -0.8094 43 1 1.2767 -7.7458 0.7086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754745851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:17 Heat of formation + Delta-G solvation = -111.340115 kcal Electronic energy + Delta-G solvation = -28626.820902 eV Core-core repulsion = 24286.968614 eV Total energy + Delta-G solvation = -4339.852288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.38610 -41.39539 -40.50178 -39.62122 -37.14561 -35.93497 -35.86060 -35.33803 -33.36478 -32.44183 -31.45095 -30.39125 -28.72189 -26.98691 -25.70768 -24.46704 -23.58743 -22.81878 -21.62864 -21.38456 -21.08939 -19.90374 -19.72735 -18.19045 -17.72722 -17.71045 -17.48476 -17.16957 -16.75167 -16.48366 -16.31084 -16.23338 -15.92740 -15.71596 -15.60299 -14.95985 -14.85152 -14.63285 -14.52462 -14.39492 -13.76971 -13.74723 -13.45636 -13.15880 -13.01320 -12.74161 -12.45592 -12.42973 -12.36678 -12.34419 -12.12236 -11.94291 -11.89598 -11.49401 -11.42426 -11.04385 -10.40587 -10.18573 -10.08970 -10.01808 -9.41235 -8.47141 -5.96009 0.08989 1.05500 1.39237 1.41298 1.52353 1.69819 2.02145 2.02429 2.19635 2.27590 2.68366 3.06979 3.16352 3.20120 3.27200 3.40523 3.58210 3.70412 3.82562 3.89150 4.20764 4.25118 4.31139 4.43493 4.50248 4.54322 4.60155 4.60430 4.67180 4.69656 4.77405 4.93777 5.02583 5.17385 5.17965 5.22069 5.40412 5.78961 5.87674 6.05910 6.19240 6.54120 6.59089 6.65041 6.98297 7.11482 7.53729 8.09256 8.70005 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.001882 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.449253 B =14877.668201 C =15310.325582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.571 5.571 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.046 3.954 13 N -0.506 5.506 14 C 0.041 3.959 15 C -0.140 4.140 16 C 0.127 3.873 17 O -0.558 6.558 18 C 0.111 3.889 19 N -0.702 5.702 20 C 0.601 3.399 21 O -0.568 6.568 22 C -0.107 4.107 23 C 0.030 3.970 24 O -0.198 6.198 25 C 0.199 3.801 26 N -0.497 5.497 27 C 0.045 3.955 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.389 0.611 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.249 0.751 41 H 0.301 0.699 42 H 0.065 0.935 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 -27.781 -7.088 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.099 0.901 9 N -0.208 5.208 10 C 0.227 3.773 11 O -0.499 6.499 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.086 4.086 15 C -0.178 4.178 16 C 0.085 3.915 17 O -0.365 6.365 18 C -0.013 4.013 19 N -0.354 5.354 20 C 0.387 3.613 21 O -0.448 6.448 22 C -0.225 4.225 23 C -0.045 4.045 24 O -0.084 6.084 25 C -0.029 4.029 26 N -0.226 5.226 27 C -0.083 4.083 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.252 0.748 40 H 0.265 0.735 41 H 0.316 0.684 42 H 0.083 0.917 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.610 -26.985 -5.945 28.942 hybrid contribution -0.004 0.537 -0.901 1.048 sum 8.606 -26.448 -6.846 28.643 Atomic orbital electron populations 1.69674 1.06857 1.29385 1.50167 1.26072 0.96571 1.02495 0.96260 0.84969 0.77731 0.76559 0.78954 1.19655 1.19525 1.19702 1.19630 0.92730 0.83880 1.49995 0.90144 1.41912 1.09321 1.04681 1.64918 1.20636 0.88295 0.85913 0.82484 1.90431 1.15437 1.87556 1.56526 1.22019 0.94315 0.88658 1.03507 1.64702 1.13397 1.00751 1.44290 1.23245 0.96540 0.97568 0.91259 1.23224 0.97320 0.93805 1.03497 1.22029 0.92673 0.92263 0.84492 1.86604 1.46364 1.74436 1.29145 1.22001 0.91937 0.91696 0.95691 1.45612 1.42223 1.22588 1.24948 1.16999 0.79991 0.80469 0.83801 1.90825 1.60881 1.70448 1.22652 1.21628 1.05512 0.99102 0.96265 1.25719 0.89029 0.95660 0.94101 1.84510 1.50304 1.46520 1.27019 1.29214 0.97269 0.81483 0.94978 1.70719 1.11349 1.28630 1.11931 1.22922 0.95968 0.89265 1.00107 0.91285 0.77032 0.91519 0.86938 0.95510 0.89933 0.89888 0.88491 0.76107 0.90022 0.90303 0.74847 0.73472 0.68436 0.91715 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.69 5.29 -306.99 -1.62 -31.31 16 10 C 0.44 21.18 7.49 87.66 0.66 21.84 16 11 O -0.61 -33.51 13.09 -3.09 -0.04 -33.55 16 12 C 0.05 1.67 5.52 85.55 0.47 2.15 16 13 N -0.51 -16.91 5.26 -887.58 -4.67 -21.57 16 14 C 0.04 1.41 5.31 86.65 0.46 1.87 16 15 C -0.14 -3.34 5.64 31.80 0.18 -3.16 16 16 C 0.13 2.71 1.05 -9.92 -0.01 2.70 16 17 O -0.56 -11.19 12.95 -148.98 -1.93 -13.12 16 18 C 0.11 2.20 4.50 86.38 0.39 2.58 16 19 N -0.70 -12.66 5.11 -466.39 -2.38 -15.05 16 20 C 0.60 12.81 7.81 86.66 0.68 13.49 16 21 O -0.57 -15.49 16.89 -4.05 -0.07 -15.56 16 22 C -0.11 -1.80 6.99 40.41 0.28 -1.51 16 23 C 0.03 0.35 11.95 67.32 0.80 1.15 16 24 O -0.20 -1.80 10.73 0.34 0.00 -1.80 16 25 C 0.20 1.33 13.19 130.52 1.72 3.05 16 26 N -0.50 -6.92 11.06 -305.14 -3.37 -10.30 16 27 C 0.05 1.15 6.18 86.45 0.53 1.68 16 28 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.40 19.63 7.90 -92.70 -0.73 18.90 16 30 H 0.07 2.22 7.81 -2.38 -0.02 2.20 16 31 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 32 H 0.03 0.96 8.02 -2.39 -0.02 0.94 16 33 H 0.08 3.47 5.96 -2.39 -0.01 3.45 16 34 H 0.08 2.01 7.86 -2.38 -0.02 2.00 16 35 H 0.10 1.87 8.08 -2.39 -0.02 1.85 16 36 H 0.39 5.00 8.14 -74.06 -0.60 4.40 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.41 6.14 7.06 -92.71 -0.65 5.48 16 40 H 0.25 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.30 -1.38 8.06 -2.91 -0.02 -1.40 16 42 H 0.06 1.64 7.39 -2.39 -0.02 1.63 16 43 H 0.11 2.38 7.68 -2.39 -0.02 2.36 16 Total: -1.00 -77.80 367.01 -5.22 -83.02 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: -0.89 Total: 36.44 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 7.45 Total: 27.37 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -11.77 Total: -127.99 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.03 Total: -64.02 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -77.80 -5.22 -83.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754745851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.319 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds