Wall clock time and date at job start Tue Mar 31 2020 20:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48504 * 109.47095 * 270.00334 * 3 2 1 5 5 H 1.48496 * 109.47309 * 30.00336 * 3 2 1 6 6 H 1.48504 * 109.47188 * 150.00497 * 3 2 1 7 7 C 1.38945 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00642 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00296 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99868 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00290 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47326 * 186.12786 * 12 10 9 14 14 C 1.47441 * 110.99964 * 176.64981 * 13 12 10 15 15 C 1.54323 * 107.37092 * 236.66280 * 14 13 12 16 16 C 1.55394 * 102.89709 * 337.89293 * 15 14 13 17 17 O 1.42897 * 110.90710 * 277.37790 * 16 15 14 18 18 C 1.53005 * 111.02391 * 153.63418 * 16 15 14 19 19 N 1.46500 * 109.46709 * 67.60475 * 18 16 15 20 20 C 1.34780 * 119.99955 * 180.02562 * 19 18 16 21 21 O 1.21612 * 119.99946 * 359.97438 * 20 19 18 22 22 C 1.47418 * 120.00419 * 180.02562 * 20 19 18 23 23 C 1.36090 * 126.45131 * 179.70961 * 22 20 19 24 24 O 1.34259 * 106.94784 * 179.84110 * 23 22 20 25 25 C 1.34048 * 108.22884 * 0.43017 * 24 23 22 26 26 N 1.29934 * 109.24149 * 359.72867 * 25 24 23 27 27 C 1.47848 * 110.99887 * 55.81028 * 13 12 10 28 28 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99654 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.46931 * 66.12977 * 12 10 9 31 31 H 1.08998 * 109.47135 * 306.13259 * 12 10 9 32 32 H 1.08995 * 109.89219 * 356.15145 * 14 13 12 33 33 H 1.09003 * 109.88837 * 117.17961 * 14 13 12 34 34 H 1.08991 * 110.70625 * 96.18421 * 15 14 13 35 35 H 1.09007 * 110.70355 * 219.41414 * 15 14 13 36 36 H 0.96698 * 114.00224 * 292.32140 * 17 16 15 37 37 H 1.08995 * 109.47359 * 187.60541 * 18 16 15 38 38 H 1.09003 * 109.47145 * 307.61277 * 18 16 15 39 39 H 0.97001 * 120.00393 * 0.02562 * 19 18 16 40 40 H 1.07992 * 126.52438 * 0.02562 * 23 22 20 41 41 H 1.07997 * 125.37961 * 179.69386 * 25 24 23 42 42 H 1.09003 * 110.37310 * 265.19026 * 27 13 12 43 43 H 1.08998 * 110.37431 * 27.42166 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0505 -3.7474 -0.1489 14 6 7.5222 -3.7786 -0.2332 15 6 7.8932 -4.4873 -1.5529 16 6 6.6193 -5.3186 -1.8702 17 8 6.6208 -6.5505 -1.1461 18 6 6.4884 -5.5702 -3.3738 19 7 7.5648 -6.4604 -3.8154 20 6 7.6512 -6.8223 -5.1108 21 8 6.8353 -6.4103 -5.9130 22 6 8.7341 -7.7185 -5.5552 23 6 8.9415 -8.1697 -6.8223 24 8 10.0314 -8.9528 -6.7854 25 6 10.4784 -8.9901 -5.5222 26 7 9.7108 -8.2552 -4.7745 27 6 5.4959 -4.3793 -1.3651 28 1 -0.4851 0.8400 0.0004 29 1 3.8648 -0.3632 -0.0007 30 1 5.9241 -1.9545 0.9388 31 1 5.9241 -1.7644 -0.8310 32 1 7.9152 -2.7620 -0.2350 33 1 7.9304 -4.3323 0.6124 34 1 8.0838 -3.7589 -2.3410 35 1 8.7560 -5.1383 -1.4115 36 1 7.3070 -7.1712 -1.4272 37 1 5.5245 -6.0345 -3.5819 38 1 6.5583 -4.6227 -3.9081 39 1 8.2154 -6.7894 -3.1755 40 1 8.3449 -7.9390 -7.6924 41 1 11.3400 -9.5439 -5.1799 42 1 4.6024 -4.9537 -1.1204 43 1 5.2660 -3.6223 -2.1149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754745852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:21 Heat of formation + Delta-G solvation = -107.600739 kcal Electronic energy + Delta-G solvation = -28847.652266 eV Core-core repulsion = 24507.962130 eV Total energy + Delta-G solvation = -4339.690136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.40159 -41.39689 -40.56924 -39.66926 -37.17707 -35.96403 -35.91115 -35.33292 -33.77473 -32.48596 -31.46824 -30.43975 -28.79768 -27.14547 -25.64800 -24.53942 -23.59652 -22.36685 -21.64683 -21.61775 -21.25867 -20.21358 -19.81284 -18.32927 -17.76511 -17.73039 -17.43974 -17.05609 -16.84601 -16.49631 -16.33973 -16.30336 -15.99997 -15.72645 -15.22191 -14.97339 -14.84204 -14.64758 -14.53068 -14.43155 -14.23569 -13.78203 -13.63977 -13.47103 -13.06042 -12.77762 -12.53439 -12.43080 -12.42036 -12.11564 -11.96632 -11.93642 -11.90926 -11.51131 -11.43285 -11.04492 -10.46117 -10.34573 -10.24250 -10.12673 -9.20839 -8.41382 -6.02351 0.06370 1.04074 1.29560 1.35100 1.44227 1.65104 1.94550 1.97326 2.15942 2.22803 2.65148 3.01933 3.04271 3.08512 3.14829 3.45480 3.57834 3.66471 3.79666 3.87081 4.12236 4.16652 4.27316 4.34775 4.49032 4.51139 4.53201 4.62912 4.64236 4.71383 4.80621 4.85552 5.03528 5.10049 5.17204 5.23987 5.52577 5.88441 5.95544 6.11636 6.15939 6.52239 6.59541 6.72243 6.88289 6.95086 7.39095 7.96741 8.76359 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002118 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.666831 B =13217.512228 C =13744.204502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.327 4.327 8 H 0.053 0.947 9 N -0.591 5.591 10 C 0.446 3.554 11 O -0.607 6.607 12 C 0.048 3.952 13 N -0.527 5.527 14 C 0.045 3.955 15 C -0.153 4.153 16 C 0.122 3.878 17 O -0.549 6.549 18 C 0.108 3.892 19 N -0.697 5.697 20 C 0.600 3.400 21 O -0.571 6.571 22 C -0.105 4.105 23 C 0.030 3.970 24 O -0.198 6.198 25 C 0.201 3.799 26 N -0.495 5.495 27 C 0.072 3.928 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.384 0.616 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.416 0.584 40 H 0.247 0.753 41 H 0.303 0.697 42 H 0.059 0.941 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.491 -12.509 -11.385 35.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.233 5.233 10 C 0.234 3.766 11 O -0.491 6.491 12 C -0.083 4.083 13 N -0.252 5.252 14 C -0.082 4.082 15 C -0.192 4.192 16 C 0.080 3.920 17 O -0.356 6.356 18 C -0.016 4.016 19 N -0.349 5.349 20 C 0.387 3.613 21 O -0.451 6.451 22 C -0.223 4.223 23 C -0.045 4.045 24 O -0.083 6.083 25 C -0.028 4.028 26 N -0.224 5.224 27 C -0.057 4.057 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.233 0.767 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.254 0.746 40 H 0.263 0.737 41 H 0.318 0.682 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 29.726 -12.697 -10.507 33.989 hybrid contribution 0.026 0.858 -1.173 1.453 sum 29.752 -11.839 -11.680 34.085 Atomic orbital electron populations 1.69810 1.08172 1.29240 1.50356 1.26147 0.96507 1.02810 0.96114 0.85351 0.79543 0.76606 0.79928 1.18153 1.20012 1.15292 1.18983 0.81481 0.94865 1.50271 0.92845 1.42026 1.05800 1.07524 1.67920 1.20942 0.90937 0.83390 0.81358 1.90563 1.71332 1.32578 1.54606 1.22163 0.90111 0.91280 1.04774 1.63216 1.07801 1.15875 1.38277 1.22920 0.85528 1.01598 0.98136 1.23490 0.97285 1.00134 0.98258 1.22429 0.96184 0.85455 0.87947 1.86718 1.59247 1.27333 1.62283 1.21814 0.90632 0.94988 0.94197 1.45501 1.31106 1.49204 1.09123 1.17069 0.82751 0.79202 0.82319 1.90846 1.42842 1.57098 1.54308 1.21531 1.00434 1.07467 0.92904 1.25687 0.87607 0.90958 1.00241 1.84514 1.35701 1.53720 1.34364 1.29257 1.00308 0.97559 0.75630 1.70707 1.04995 1.12170 1.34497 1.22742 0.96886 0.95603 0.90448 0.91163 0.77477 0.85954 0.89889 0.90077 0.89713 0.89085 0.87440 0.76652 0.92106 0.89911 0.74557 0.73693 0.68222 0.92283 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.66 0.30 -57.05 16 2 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 3 Si 0.97 39.25 27.74 68.60 1.90 41.15 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 7 C -0.33 -19.51 10.16 84.04 0.85 -18.66 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -28.37 5.09 -306.98 -1.56 -29.93 16 10 C 0.45 20.69 7.34 87.66 0.64 21.33 16 11 O -0.61 -34.67 13.89 -3.09 -0.04 -34.71 16 12 C 0.05 1.50 5.07 85.56 0.43 1.94 16 13 N -0.53 -16.60 5.07 -890.09 -4.51 -21.11 16 14 C 0.04 0.92 6.89 86.65 0.60 1.52 16 15 C -0.15 -2.53 5.94 31.87 0.19 -2.34 16 16 C 0.12 2.87 0.97 -9.32 -0.01 2.86 16 17 O -0.55 -13.56 13.19 -148.98 -1.97 -15.52 16 18 C 0.11 2.50 4.88 86.38 0.42 2.92 16 19 N -0.70 -13.03 5.19 -466.36 -2.42 -15.45 16 20 C 0.60 13.35 7.81 86.66 0.68 14.03 16 21 O -0.57 -16.83 16.89 -4.07 -0.07 -16.90 16 22 C -0.11 -1.76 6.99 40.41 0.28 -1.47 16 23 C 0.03 0.36 11.95 67.32 0.80 1.16 16 24 O -0.20 -1.70 10.73 0.37 0.00 -1.69 16 25 C 0.20 1.12 13.19 130.52 1.72 2.85 16 26 N -0.49 -6.34 11.06 -305.15 -3.37 -9.71 16 27 C 0.07 2.41 4.48 86.77 0.39 2.80 16 28 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.39 15.38 5.76 -92.71 -0.53 14.85 16 30 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 31 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.08 1.28 7.58 -2.39 -0.02 1.26 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.38 5.91 7.69 -74.06 -0.57 5.34 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 39 H 0.42 5.79 7.00 -92.71 -0.65 5.14 16 40 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.30 -1.84 8.06 -2.91 -0.02 -1.86 16 42 H 0.06 2.61 6.94 -2.39 -0.02 2.59 16 43 H 0.05 1.77 7.63 -2.39 -0.02 1.75 16 Total: -1.00 -91.74 365.90 -4.98 -96.72 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.72 Total: 35.78 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 7.47 Total: 28.42 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -11.57 Total: -133.25 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -2.07 Total: -68.82 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.15 kcal Total: -91.74 -4.98 -96.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754745852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.881 kcal (2) G-P(sol) polarization free energy of solvation -91.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds