Wall clock time and date at job start Tue Mar 31 2020 20:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00004 * 2 1 4 4 H 1.48507 * 109.47286 * 240.00045 * 3 2 1 5 5 H 1.48501 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47181 * 119.99850 * 3 2 1 7 7 C 1.38952 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99676 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00270 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99772 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00156 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47246 * 180.02562 * 12 10 9 14 14 C 1.48534 * 111.00038 * 307.40060 * 13 12 10 15 15 C 1.54937 * 103.22626 * 200.28016 * 14 13 12 16 16 C 1.54588 * 102.92071 * 37.41272 * 15 14 13 17 17 O 1.42895 * 110.39459 * 97.00684 * 16 15 14 18 18 C 1.53006 * 110.30782 * 219.12509 * 16 15 14 19 19 N 1.46500 * 109.47234 * 300.72006 * 18 16 15 20 20 C 1.34773 * 119.99839 * 179.97438 * 19 18 16 21 21 O 1.21689 * 120.00268 * 0.02562 * 20 19 18 22 22 C 1.46722 * 119.99844 * 179.97438 * 20 19 18 23 23 C 1.36348 * 126.64471 * 179.71047 * 22 20 19 24 24 N 1.33682 * 107.45244 * 180.26792 * 23 22 20 25 25 C 1.30613 * 108.99915 * 0.02562 * 24 23 22 26 26 O 1.33662 * 109.15512 * 0.02562 * 25 24 23 27 27 C 1.47896 * 110.99890 * 190.00344 * 13 12 10 28 28 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99630 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47071 * 60.00402 * 12 10 9 31 31 H 1.08994 * 109.47195 * 300.00498 * 12 10 9 32 32 H 1.09002 * 110.66461 * 318.71528 * 14 13 12 33 33 H 1.08997 * 110.66805 * 81.67397 * 14 13 12 34 34 H 1.09001 * 110.71769 * 279.05511 * 15 14 13 35 35 H 1.08996 * 110.72153 * 155.77018 * 15 14 13 36 36 H 0.96699 * 114.00642 * 62.83788 * 17 16 15 37 37 H 1.09001 * 109.47098 * 180.71276 * 18 16 15 38 38 H 1.09001 * 109.46614 * 60.71976 * 18 16 15 39 39 H 0.97000 * 119.99657 * 359.97438 * 19 18 16 40 40 H 1.08000 * 126.26957 * 0.27329 * 23 22 20 41 41 H 1.08002 * 125.42721 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.92115 * 26.49134 * 27 13 12 43 43 H 1.09006 * 109.91453 * 265.19656 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1983 -5.9795 -0.0017 14 6 3.1836 -5.8368 -1.1041 15 6 3.7273 -7.2767 -1.2822 16 6 2.4729 -8.1507 -1.0532 17 8 1.8817 -8.5105 -2.3034 18 6 2.8383 -9.4062 -0.2588 19 7 3.8455 -10.1741 -0.9951 20 6 4.3211 -11.3266 -0.4833 21 8 3.9135 -11.7297 0.5901 22 6 5.3294 -12.0959 -1.2209 23 6 5.9044 -13.2689 -0.8303 24 7 6.7701 -13.6281 -1.7836 25 6 6.7513 -12.7327 -2.7343 26 8 5.8745 -11.7749 -2.4175 27 6 1.5090 -7.2660 -0.2410 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6181 -4.9209 0.8896 32 1 2.6938 -5.4950 -2.0159 33 1 3.9833 -5.1533 -0.8192 34 1 4.4913 -7.4954 -0.5361 35 1 4.1182 -7.4195 -2.2895 36 1 2.4520 -9.0507 -2.8673 37 1 1.9475 -10.0180 -0.1162 38 1 3.2399 -9.1175 0.7125 39 1 4.1701 -9.8530 -1.8509 40 1 5.6981 -13.8089 0.0820 41 1 7.3497 -12.7611 -3.6329 42 1 0.5934 -7.0969 -0.8078 43 1 1.2770 -7.7454 0.7100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754755951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:47 Heat of formation + Delta-G solvation = -74.126983 kcal Electronic energy + Delta-G solvation = -28678.102739 eV Core-core repulsion = 24339.864134 eV Total energy + Delta-G solvation = -4338.238605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.94681 -40.49959 -39.43119 -38.13235 -36.01532 -35.54097 -34.65992 -33.92794 -31.71469 -31.29881 -30.82086 -29.36152 -27.37250 -25.64121 -24.24785 -23.75265 -23.14769 -21.74338 -20.98554 -20.52391 -19.30794 -19.20036 -17.94450 -17.57689 -17.36422 -17.00933 -16.35039 -15.97908 -15.75316 -15.33726 -15.29448 -14.82364 -14.59553 -14.52265 -14.18487 -14.02222 -13.92252 -13.64112 -13.34923 -13.09212 -12.76926 -12.34918 -12.05308 -11.91810 -11.76482 -11.57283 -11.43484 -11.25174 -11.22811 -11.04453 -10.92409 -10.70532 -10.47274 -10.25411 -10.15093 -9.81537 -9.51787 -9.50254 -8.44693 -8.07620 -7.95874 -6.45160 -3.86283 0.29885 1.89279 1.92247 2.60594 2.62610 3.17373 3.23728 3.27629 3.61283 3.67985 3.85171 4.10207 4.15722 4.27802 4.33183 4.40486 4.46608 4.62116 4.95017 5.01435 5.03734 5.16406 5.21390 5.33968 5.41857 5.51288 5.60488 5.63940 5.66539 5.71915 5.80139 5.90049 5.92055 6.17064 6.22239 6.56299 6.73279 7.02261 7.06913 7.18504 7.30483 7.50292 7.51658 8.01626 8.57225 9.13804 9.49471 10.00775 10.72273 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.001891 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.797906 B =14800.342928 C =15230.451654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.035 3.965 13 N -0.492 5.492 14 C 0.042 3.958 15 C -0.154 4.154 16 C 0.111 3.889 17 O -0.549 6.549 18 C 0.100 3.900 19 N -0.716 5.716 20 C 0.610 3.390 21 O -0.510 6.510 22 C -0.111 4.111 23 C 0.055 3.945 24 N -0.495 5.495 25 C 0.203 3.797 26 O -0.192 6.192 27 C 0.048 3.952 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.371 0.629 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.403 0.597 40 H 0.198 0.802 41 H 0.258 0.742 42 H 0.063 0.937 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -23.560 -6.900 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.096 4.096 13 N -0.217 5.217 14 C -0.085 4.085 15 C -0.192 4.192 16 C 0.069 3.931 17 O -0.354 6.354 18 C -0.023 4.023 19 N -0.367 5.367 20 C 0.395 3.605 21 O -0.387 6.387 22 C -0.166 4.166 23 C -0.088 4.088 24 N -0.223 5.223 25 C -0.021 4.021 26 O -0.078 6.078 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.238 0.762 40 H 0.215 0.785 41 H 0.273 0.727 42 H 0.081 0.919 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.329 -23.755 -5.407 25.441 hybrid contribution -0.419 1.225 -1.547 2.017 sum 6.910 -22.530 -6.955 24.570 Atomic orbital electron populations 1.69603 1.05950 1.28351 1.50205 1.25278 0.95646 0.99778 0.97195 0.85906 0.78761 0.80404 0.79071 1.19924 1.20958 1.19850 1.19648 0.93338 0.82168 1.47876 0.87916 1.41838 1.09241 1.04556 1.63933 1.19664 0.88325 0.84638 0.84661 1.90428 1.13716 1.86727 1.55886 1.22125 0.94540 0.91080 1.01865 1.64732 1.13172 0.99869 1.43887 1.23437 0.97556 0.95449 0.92055 1.23320 0.96964 0.96874 1.02054 1.22345 0.94042 0.92393 0.84282 1.86656 1.45639 1.73912 1.29207 1.22254 0.91590 0.92155 0.96305 1.45826 1.43119 1.23078 1.24694 1.16287 0.79677 0.80329 0.84230 1.90937 1.58387 1.69125 1.20204 1.23192 1.04575 1.00929 0.87912 1.23657 0.92380 0.93270 0.99476 1.70481 1.21001 1.28267 1.02532 1.28488 0.91191 0.82217 1.00251 1.84500 1.44984 1.45781 1.32530 1.22839 0.95840 0.90687 0.98700 0.91754 0.77396 0.93050 0.88981 0.94167 0.86075 0.89769 0.90769 0.78168 0.89872 0.89041 0.76195 0.78495 0.72654 0.91853 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.18 7.49 -10.99 -0.08 10.10 16 11 O -0.58 -15.04 13.09 5.55 0.07 -14.96 16 12 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 13 N -0.49 -7.95 5.26 -231.89 -1.22 -9.17 16 14 C 0.04 0.67 5.31 -1.90 -0.01 0.66 16 15 C -0.15 -1.73 5.64 -24.87 -0.14 -1.87 16 16 C 0.11 1.15 1.05 -89.26 -0.09 1.05 16 17 O -0.55 -5.47 12.95 -35.23 -0.46 -5.93 16 18 C 0.10 0.93 4.50 -4.04 -0.02 0.91 16 19 N -0.72 -5.70 5.11 -61.60 -0.31 -6.01 16 20 C 0.61 6.00 7.79 -12.84 -0.10 5.90 16 21 O -0.51 -6.60 16.89 5.20 0.09 -6.51 16 22 C -0.11 -0.93 7.18 -36.84 -0.26 -1.20 16 23 C 0.05 0.46 11.66 -17.43 -0.20 0.26 16 24 N -0.49 -3.96 11.26 -14.67 -0.17 -4.13 16 25 C 0.20 1.01 13.21 52.24 0.69 1.70 16 26 O -0.19 -1.25 10.57 4.43 0.05 -1.20 16 27 C 0.05 0.60 6.18 -2.76 -0.02 0.59 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 30 H 0.05 0.85 7.81 -51.93 -0.41 0.44 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 33 H 0.12 2.34 5.96 -51.93 -0.31 2.03 16 34 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 35 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.37 2.29 8.13 45.56 0.37 2.66 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.40 2.38 7.13 -40.82 -0.29 2.09 16 40 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.26 -0.08 8.06 -52.49 -0.42 -0.50 16 42 H 0.06 0.82 7.39 -51.93 -0.38 0.44 16 43 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -34.53 367.01 -5.89 -40.42 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.61 Total: 12.91 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.51 Total: 10.82 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -1.03 Total: -56.85 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.25 Total: -28.61 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.53 -5.89 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754755951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.706 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds