Wall clock time and date at job start Tue Mar 31 2020 20:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47006 * 269.99638 * 3 2 1 5 5 H 1.48497 * 109.47224 * 30.00217 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00044 * 3 2 1 7 7 C 1.38813 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99299 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10378 * 359.97438 * 9 7 2 11 11 C 1.56236 * 106.50918 * 171.34021 * 10 9 7 12 12 C 1.52136 * 100.80786 * 336.55593 * 11 10 9 13 13 N 1.46503 * 111.48732 * 285.89106 * 12 11 10 14 14 C 1.34779 * 120.00565 * 281.20581 * 13 12 11 15 15 O 1.21283 * 119.99543 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00199 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47149 * 179.97438 * 16 14 13 18 18 F 1.39907 * 109.47037 * 299.99791 * 17 16 14 19 19 F 1.39901 * 109.47270 * 59.99748 * 17 16 14 20 20 C 1.52999 * 109.47490 * 180.02562 * 17 16 14 21 21 F 1.39892 * 109.47608 * 179.97438 * 20 17 16 22 22 F 1.39900 * 109.46796 * 300.00184 * 20 17 16 23 23 C 1.51222 * 122.11537 * 151.20980 * 12 11 10 24 24 C 1.55697 * 104.70598 * 218.66653 * 23 12 11 25 25 C 1.56562 * 105.79741 * 7.32208 * 24 23 12 26 26 C 1.42702 * 127.10273 * 180.02562 * 9 7 2 27 27 H 1.09002 * 108.17856 * 103.46380 * 26 9 7 28 28 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.04764 * 290.60448 * 10 9 7 30 30 H 1.09000 * 110.04495 * 52.02606 * 10 9 7 31 31 H 1.08995 * 111.14752 * 218.66801 * 11 10 9 32 32 H 1.08994 * 111.14752 * 94.43816 * 11 10 9 33 33 H 0.97009 * 119.99763 * 101.20326 * 13 12 11 34 34 H 1.09002 * 109.47076 * 299.99702 * 16 14 13 35 35 H 1.09005 * 109.47036 * 59.99504 * 16 14 13 36 36 H 1.09005 * 109.46897 * 59.99516 * 20 17 16 37 37 H 1.09002 * 110.40964 * 337.50835 * 23 12 11 38 38 H 1.09002 * 110.41125 * 99.82731 * 23 12 11 39 39 H 1.09009 * 110.15308 * 126.42747 * 24 23 12 40 40 H 1.09005 * 110.15798 * 248.18533 * 24 23 12 41 41 H 1.09003 * 110.92573 * 266.07150 * 25 24 23 42 42 H 1.08998 * 111.01151 * 142.35588 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4134 -4.0971 -0.2250 12 6 0.8805 -4.5063 -0.9126 13 7 0.9234 -4.0357 -2.2993 14 6 0.2465 -4.6993 -3.2575 15 8 -0.3977 -5.6863 -2.9717 16 6 0.2911 -4.2155 -4.6840 17 6 -0.5545 -5.1396 -5.5625 18 9 -0.0456 -6.4411 -5.4954 19 9 -1.8778 -5.1323 -5.1088 20 6 -0.5087 -4.6489 -7.0110 21 9 -1.2814 -5.4941 -7.8144 22 9 -1.0172 -3.3473 -7.0786 23 6 1.4463 -5.9037 -0.7951 24 6 2.9860 -5.6991 -0.6878 25 6 3.2027 -4.1538 -0.5603 26 6 1.8807 -3.7026 0.0016 27 1 1.7901 -4.1093 1.0088 28 1 -0.4850 0.8401 0.0004 29 1 -0.5713 -2.2613 0.9590 30 1 -0.6046 -1.9937 -0.8067 31 1 -1.2728 -4.2587 -0.8757 32 1 -0.5369 -4.6196 0.7235 33 1 1.4389 -3.2464 -2.5280 34 1 -0.1050 -3.2013 -4.7362 35 1 1.3221 -4.2216 -5.0376 36 1 0.5225 -4.6549 -7.3642 37 1 1.0647 -6.3943 0.1004 38 1 1.2014 -6.4888 -1.6816 39 1 3.3718 -6.2078 0.1957 40 1 3.4784 -6.0763 -1.5842 41 1 3.3860 -3.7045 -1.5364 42 1 4.0163 -3.9288 0.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755702477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:08 Heat of formation + Delta-G solvation = -195.123066 kcal Electronic energy + Delta-G solvation = -31683.463491 eV Core-core repulsion = 26778.201400 eV Total energy + Delta-G solvation = -4905.262091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.99797 -48.73522 -47.64281 -47.10456 -40.55996 -38.26619 -34.48554 -33.31938 -32.76400 -31.72061 -29.97243 -27.86718 -26.98971 -25.72664 -24.12858 -22.85196 -20.99203 -20.52813 -19.68604 -18.93022 -18.67270 -18.45786 -17.91532 -16.90322 -16.61013 -16.50528 -16.33257 -15.69017 -15.20208 -14.64827 -14.62624 -14.51908 -14.36008 -14.01807 -13.93068 -13.89656 -13.68597 -13.59445 -13.50609 -13.07801 -12.70615 -12.41173 -12.39976 -12.31582 -11.93340 -11.48425 -11.40547 -11.08435 -11.08125 -10.96693 -10.83138 -10.58781 -10.35914 -10.11872 -10.00873 -9.76858 -9.69306 -9.23954 -8.75892 -8.58335 -6.95575 -5.83047 -3.18516 2.37909 2.79586 3.22242 3.31247 3.37866 3.39853 3.43548 3.52230 3.69021 3.85781 4.37529 4.44604 4.53494 4.56702 4.87755 5.04362 5.17466 5.20598 5.23651 5.40540 5.53580 5.67370 5.76069 5.88941 5.93985 6.10743 6.18515 6.26297 6.32656 6.40477 6.44373 6.57534 6.74533 6.84530 7.08144 7.44275 7.51823 7.69316 7.86233 8.10913 8.48421 9.04600 9.71083 10.39813 11.28919 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.004046 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.134700 B = 6918.987059 C = 8188.168251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.585 5.585 10 C 0.177 3.823 11 C -0.139 4.139 12 C 0.133 3.867 13 N -0.684 5.684 14 C 0.517 3.483 15 O -0.530 6.530 16 C -0.196 4.196 17 C 0.274 3.726 18 F -0.169 7.169 19 F -0.169 7.169 20 C 0.235 3.765 21 F -0.184 7.184 22 F -0.179 7.179 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.114 4.114 26 C 0.159 3.841 27 H 0.023 0.977 28 H 0.254 0.746 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.406 0.594 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -9.763 -11.382 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.053 3.947 11 C -0.178 4.178 12 C 0.045 3.955 13 N -0.334 5.334 14 C 0.301 3.699 15 O -0.408 6.408 16 C -0.237 4.237 17 C 0.236 3.764 18 F -0.150 7.150 19 F -0.149 7.149 20 C 0.180 3.820 21 F -0.165 7.165 22 F -0.160 7.160 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.152 4.152 26 C 0.048 3.952 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.025 -10.208 -11.129 15.401 hybrid contribution 0.440 1.349 -0.095 1.422 sum 3.464 -8.859 -11.224 14.713 Atomic orbital electron populations 1.69917 1.04924 1.25288 1.56279 1.24800 0.95610 0.97665 1.01895 0.86166 0.78674 0.83608 0.77554 1.21595 1.21675 1.20696 1.19010 0.90285 0.82217 1.44689 0.90268 1.43692 1.01717 0.99254 1.86190 1.22030 0.83164 0.88553 1.00909 1.22799 0.96226 0.99590 0.99222 1.21547 0.98558 0.94333 0.81074 1.45607 1.49996 1.30581 1.07226 1.19665 0.80164 0.84172 0.85948 1.90753 1.41558 1.25916 1.82543 1.22838 1.03336 1.02194 0.95313 1.21519 0.79909 0.82005 0.92955 1.93113 1.86705 1.38370 1.96824 1.93139 1.35211 1.96436 1.90133 1.22858 0.95488 0.74399 0.89269 1.93068 1.78183 1.70697 1.74564 1.93081 1.89498 1.36821 1.96611 1.21902 0.94696 0.96064 1.02720 1.22870 0.95824 0.95829 1.00950 1.21889 0.97802 0.94515 1.01030 1.20852 0.91657 0.87345 0.95322 0.95968 0.93582 0.94608 0.91611 0.91650 0.91490 0.75761 0.84809 0.85455 0.83991 0.91182 0.90525 0.91963 0.92304 0.91690 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.42 10.55 55.49 0.59 -24.84 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.92 10.29 -15.06 -0.15 -6.07 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -13.47 3.06 -162.62 -0.50 -13.96 16 10 C 0.18 4.07 5.35 -0.75 0.00 4.07 16 11 C -0.14 -2.68 6.32 -25.44 -0.16 -2.84 16 12 C 0.13 2.30 0.43 -130.68 -0.06 2.25 16 13 N -0.68 -10.96 4.34 -46.55 -0.20 -11.17 16 14 C 0.52 7.98 7.04 -10.99 -0.08 7.91 16 15 O -0.53 -9.90 13.04 5.55 0.07 -9.83 16 16 C -0.20 -2.14 5.17 -27.89 -0.14 -2.28 16 17 C 0.27 3.31 1.40 -26.73 -0.04 3.27 16 18 F -0.17 -2.28 16.12 2.25 0.04 -2.24 16 19 F -0.17 -2.65 16.11 2.25 0.04 -2.62 16 20 C 0.23 2.11 4.83 37.16 0.18 2.29 16 21 F -0.18 -2.05 17.30 2.25 0.04 -2.01 16 22 F -0.18 -1.85 16.80 2.25 0.04 -1.82 16 23 C -0.12 -1.77 5.96 -26.19 -0.16 -1.93 16 24 C -0.12 -1.57 6.96 -23.38 -0.16 -1.73 16 25 C -0.11 -1.78 6.47 -26.03 -0.17 -1.95 16 26 C 0.16 3.01 2.62 -68.67 -0.18 2.82 16 27 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.04 0.91 7.98 -51.93 -0.41 0.50 16 30 H 0.07 1.68 7.04 -51.93 -0.37 1.31 16 31 H 0.06 1.30 7.89 -51.93 -0.41 0.89 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.41 6.45 7.96 -40.82 -0.32 6.12 16 34 H 0.13 1.34 7.80 -51.93 -0.41 0.94 16 35 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.26 6.20 -51.93 -0.32 0.93 16 39 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.99 7.51 -51.93 -0.39 0.60 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -31.22 350.03 -6.41 -37.63 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.55 Total: 4.18 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.22 Total: 5.64 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.11 Total: -49.97 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.15 Total: -8.68 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.22 -6.41 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755702477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.495 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds