Wall clock time and date at job start Tue Mar 31 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47006 * 269.99638 * 3 2 1 5 5 H 1.48497 * 109.47224 * 30.00217 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00044 * 3 2 1 7 7 C 1.38813 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99299 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10378 * 359.97438 * 9 7 2 11 11 C 1.56236 * 106.50918 * 171.34021 * 10 9 7 12 12 C 1.52136 * 100.80786 * 336.55593 * 11 10 9 13 13 N 1.46503 * 111.48732 * 285.89106 * 12 11 10 14 14 C 1.34779 * 120.00565 * 281.20581 * 13 12 11 15 15 O 1.21283 * 119.99543 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00199 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47149 * 179.97438 * 16 14 13 18 18 F 1.39907 * 109.47037 * 299.99791 * 17 16 14 19 19 F 1.39901 * 109.47270 * 59.99748 * 17 16 14 20 20 C 1.52999 * 109.47490 * 180.02562 * 17 16 14 21 21 F 1.39892 * 109.47608 * 179.97438 * 20 17 16 22 22 F 1.39900 * 109.46796 * 300.00184 * 20 17 16 23 23 C 1.51222 * 122.11537 * 151.20980 * 12 11 10 24 24 C 1.55697 * 104.70598 * 218.66653 * 23 12 11 25 25 C 1.56562 * 105.79741 * 7.32208 * 24 23 12 26 26 C 1.42702 * 127.10273 * 180.02562 * 9 7 2 27 27 H 1.09002 * 108.17856 * 103.46380 * 26 9 7 28 28 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.04764 * 290.60448 * 10 9 7 30 30 H 1.09000 * 110.04495 * 52.02606 * 10 9 7 31 31 H 1.08995 * 111.14752 * 218.66801 * 11 10 9 32 32 H 1.08994 * 111.14752 * 94.43816 * 11 10 9 33 33 H 0.97009 * 119.99763 * 101.20326 * 13 12 11 34 34 H 1.09002 * 109.47076 * 299.99702 * 16 14 13 35 35 H 1.09005 * 109.47036 * 59.99504 * 16 14 13 36 36 H 1.09005 * 109.46897 * 59.99516 * 20 17 16 37 37 H 1.09002 * 110.40964 * 337.50835 * 23 12 11 38 38 H 1.09002 * 110.41125 * 99.82731 * 23 12 11 39 39 H 1.09009 * 110.15308 * 126.42747 * 24 23 12 40 40 H 1.09005 * 110.15798 * 248.18533 * 24 23 12 41 41 H 1.09003 * 110.92573 * 266.07150 * 25 24 23 42 42 H 1.08998 * 111.01151 * 142.35588 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4134 -4.0971 -0.2250 12 6 0.8805 -4.5063 -0.9126 13 7 0.9234 -4.0357 -2.2993 14 6 0.2465 -4.6993 -3.2575 15 8 -0.3977 -5.6863 -2.9717 16 6 0.2911 -4.2155 -4.6840 17 6 -0.5545 -5.1396 -5.5625 18 9 -0.0456 -6.4411 -5.4954 19 9 -1.8778 -5.1323 -5.1088 20 6 -0.5087 -4.6489 -7.0110 21 9 -1.2814 -5.4941 -7.8144 22 9 -1.0172 -3.3473 -7.0786 23 6 1.4463 -5.9037 -0.7951 24 6 2.9860 -5.6991 -0.6878 25 6 3.2027 -4.1538 -0.5603 26 6 1.8807 -3.7026 0.0016 27 1 1.7901 -4.1093 1.0088 28 1 -0.4850 0.8401 0.0004 29 1 -0.5713 -2.2613 0.9590 30 1 -0.6046 -1.9937 -0.8067 31 1 -1.2728 -4.2587 -0.8757 32 1 -0.5369 -4.6196 0.7235 33 1 1.4389 -3.2464 -2.5280 34 1 -0.1050 -3.2013 -4.7362 35 1 1.3221 -4.2216 -5.0376 36 1 0.5225 -4.6549 -7.3642 37 1 1.0647 -6.3943 0.1004 38 1 1.2014 -6.4888 -1.6816 39 1 3.3718 -6.2078 0.1957 40 1 3.4784 -6.0763 -1.5842 41 1 3.3860 -3.7045 -1.5364 42 1 4.0163 -3.9288 0.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755702477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:07 Heat of formation + Delta-G solvation = -214.233840 kcal Electronic energy + Delta-G solvation = -31684.292196 eV Core-core repulsion = 26778.201400 eV Total energy + Delta-G solvation = -4906.090796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.85223 -49.61966 -48.49829 -48.05072 -41.95881 -39.61618 -36.14296 -34.56516 -33.89546 -33.38683 -31.56512 -28.82046 -28.49974 -27.13893 -25.93622 -23.79546 -22.32559 -21.93212 -21.22726 -20.21388 -19.52010 -19.44853 -18.76160 -18.34585 -17.75426 -17.64684 -17.48074 -17.10698 -16.43889 -16.33165 -15.72029 -15.70739 -15.54756 -15.33552 -15.14375 -14.92656 -14.84612 -14.64042 -14.55427 -14.16326 -14.07150 -13.91907 -13.49852 -13.38905 -13.19366 -13.06025 -12.90694 -12.84350 -12.59925 -12.22149 -12.08695 -12.02319 -11.88194 -11.81250 -11.55485 -11.35779 -11.07935 -10.74396 -10.62038 -9.94755 -8.86891 -7.82456 -5.18686 1.50107 1.51970 1.55084 1.59861 1.62370 2.17258 2.52023 2.55953 2.80404 2.94665 3.01889 3.09948 3.38147 3.67912 3.72954 3.76789 3.85242 3.90995 4.10997 4.28035 4.29916 4.35170 4.40650 4.42358 4.58567 4.63282 4.80871 4.94141 4.99135 5.06803 5.13908 5.24025 5.29617 5.50244 5.55977 5.61026 5.67632 5.78776 6.18817 6.60446 7.05610 7.25385 7.78177 8.50347 9.29272 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.004046 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.134700 B = 6918.987059 C = 8188.168251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.231 4.231 8 H 0.090 0.910 9 N -0.596 5.596 10 C 0.190 3.810 11 C -0.130 4.130 12 C 0.140 3.860 13 N -0.684 5.684 14 C 0.511 3.489 15 O -0.566 6.566 16 C -0.189 4.189 17 C 0.259 3.741 18 F -0.179 7.179 19 F -0.199 7.199 20 C 0.241 3.759 21 F -0.198 7.198 22 F -0.187 7.187 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.108 4.108 26 C 0.148 3.852 27 H 0.013 0.987 28 H 0.245 0.755 29 H -0.002 1.002 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.144 0.856 35 H 0.177 0.823 36 H 0.204 0.796 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -10.468 -12.881 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.209 1.209 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.360 4.360 8 H 0.108 0.892 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.169 4.169 12 C 0.052 3.948 13 N -0.335 5.335 14 C 0.298 3.702 15 O -0.445 6.445 16 C -0.228 4.228 17 C 0.221 3.779 18 F -0.160 7.160 19 F -0.180 7.180 20 C 0.187 3.813 21 F -0.179 7.179 22 F -0.169 7.169 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.146 4.146 26 C 0.039 3.961 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.162 0.838 35 H 0.195 0.805 36 H 0.220 0.780 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.887 -10.939 -12.641 17.724 hybrid contribution -0.479 1.523 0.442 1.657 sum 5.408 -9.416 -12.200 16.332 Atomic orbital electron populations 1.70133 1.06423 1.25191 1.58287 1.25543 0.96257 1.00747 1.02726 0.85168 0.77580 0.79566 0.77527 1.20936 1.23172 1.19497 1.19395 0.90911 0.82998 1.42671 0.89192 1.43789 1.01733 1.00414 1.86023 1.21686 0.83509 0.90565 0.97669 1.22653 0.97309 0.96991 0.99944 1.21447 0.96254 0.95460 0.81638 1.45605 1.50335 1.30718 1.06818 1.20380 0.78909 0.83418 0.87533 1.90739 1.42763 1.27566 1.83480 1.22908 1.06194 1.01877 0.91857 1.22106 0.78599 0.81832 0.95337 1.93085 1.86648 1.39222 1.97048 1.93075 1.37563 1.96548 1.90796 1.23287 0.97814 0.73271 0.86928 1.93039 1.78983 1.71254 1.74657 1.93067 1.89929 1.37401 1.96462 1.21884 0.96209 0.94238 1.02614 1.22801 0.94111 0.94190 1.02907 1.21894 0.95682 0.95898 1.01136 1.21038 0.94446 0.85235 0.95398 0.96987 0.94571 0.98326 0.94716 0.92641 0.90532 0.75542 0.83838 0.80508 0.77973 0.90811 0.91182 0.90166 0.90187 0.91085 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.56 10.55 21.65 0.23 -54.33 16 2 C -0.06 -3.14 5.49 84.86 0.47 -2.68 16 3 Si 0.97 42.84 29.55 68.60 2.03 44.87 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.23 -11.63 10.29 84.03 0.86 -10.76 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.60 -27.62 3.06 -668.41 -2.04 -29.67 16 10 C 0.19 9.12 5.35 86.96 0.47 9.59 16 11 C -0.13 -5.11 6.32 31.43 0.20 -4.91 16 12 C 0.14 4.75 0.43 4.34 0.00 4.75 16 13 N -0.68 -21.10 4.34 -419.58 -1.82 -22.92 16 14 C 0.51 15.15 7.04 87.65 0.62 15.76 16 15 O -0.57 -20.91 13.04 -3.04 -0.04 -20.94 16 16 C -0.19 -3.62 5.17 29.84 0.15 -3.47 16 17 C 0.26 5.79 1.40 30.59 0.04 5.83 16 18 F -0.18 -4.52 16.12 44.97 0.73 -3.80 16 19 F -0.20 -6.28 16.11 44.97 0.72 -5.56 16 20 C 0.24 3.64 4.83 71.98 0.35 3.98 16 21 F -0.20 -4.06 17.30 44.97 0.78 -3.28 16 22 F -0.19 -3.46 16.80 44.97 0.76 -2.70 16 23 C -0.11 -3.18 5.96 30.94 0.18 -3.00 16 24 C -0.10 -2.38 6.96 32.77 0.23 -2.16 16 25 C -0.11 -3.05 6.47 31.05 0.20 -2.85 16 26 C 0.15 5.45 2.62 46.50 0.12 5.57 16 27 H 0.01 0.50 7.98 -2.39 -0.02 0.48 16 28 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.00 -0.08 7.98 -2.39 -0.02 -0.10 16 30 H 0.03 1.86 7.04 -2.39 -0.02 1.85 16 31 H 0.05 2.28 7.89 -2.39 -0.02 2.26 16 32 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.41 12.30 7.96 -92.70 -0.74 11.56 16 34 H 0.14 2.55 7.80 -2.39 -0.02 2.53 16 35 H 0.18 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.20 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 2.15 6.20 -2.39 -0.01 2.14 16 39 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.07 1.94 7.51 -2.39 -0.02 1.92 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -71.37 350.03 5.56 -65.81 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.33 Total: 16.86 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 3.89 Total: 15.66 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.64 Total: -106.92 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.04 Total: -20.94 kcal Atomic # 9 Polarization: -18.33 SS G_CDS: 2.98 Total: -15.34 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.37 5.56 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755702477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.420 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds