Wall clock time and date at job start Tue Mar 31 2020 20:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47366 * 125.58107 * 0.02562 * 9 7 2 11 11 C 1.54872 * 104.82404 * 204.68668 * 10 9 7 12 12 C 1.54919 * 101.76399 * 322.92891 * 11 10 9 13 13 N 1.46500 * 112.33112 * 273.78155 * 12 11 10 14 14 C 1.34771 * 120.00294 * 298.98607 * 13 12 11 15 15 O 1.21281 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99935 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47071 * 180.02562 * 16 14 13 18 18 F 1.39905 * 109.47185 * 299.99832 * 17 16 14 19 19 F 1.39896 * 109.47192 * 60.00119 * 17 16 14 20 20 C 1.53000 * 109.47104 * 180.02562 * 17 16 14 21 21 F 1.39896 * 109.47417 * 59.99745 * 20 17 16 22 22 F 1.39896 * 109.47144 * 179.97438 * 20 17 16 23 23 C 1.53579 * 109.08427 * 148.66945 * 12 11 10 24 24 C 1.54224 * 106.67544 * 246.92229 * 23 12 11 25 25 C 1.54759 * 104.15350 * 24.94436 * 24 23 12 26 26 C 1.46986 * 125.57872 * 179.71466 * 9 7 2 27 27 H 1.08999 * 111.81180 * 300.94129 * 26 9 7 28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.36987 * 323.52185 * 10 9 7 30 30 H 1.09002 * 110.36796 * 85.85158 * 10 9 7 31 31 H 1.08998 * 110.96695 * 81.05080 * 11 10 9 32 32 H 1.09001 * 110.96393 * 204.81021 * 11 10 9 33 33 H 0.97001 * 119.99191 * 118.99044 * 13 12 11 34 34 H 1.08994 * 109.47346 * 300.00466 * 16 14 13 35 35 H 1.09001 * 109.46955 * 60.00327 * 16 14 13 36 36 H 1.09001 * 109.46640 * 299.99800 * 20 17 16 37 37 H 1.09003 * 110.02202 * 6.23091 * 23 12 11 38 38 H 1.09003 * 110.02002 * 127.57780 * 23 12 11 39 39 H 1.09002 * 110.49183 * 143.60431 * 24 23 12 40 40 H 1.08993 * 110.49813 * 266.13928 * 24 23 12 41 41 H 1.09004 * 110.67206 * 80.62237 * 25 24 23 42 42 H 1.09006 * 110.66617 * 203.58705 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1411 -2.5313 -0.0005 11 6 -0.4037 -3.9235 0.6252 12 6 0.7721 -4.7539 0.0526 13 7 0.4662 -5.3172 -1.2647 14 6 -0.5623 -6.1763 -1.4079 15 8 -1.2349 -6.4828 -0.4464 16 6 -0.8766 -6.7562 -2.7630 17 6 -2.0808 -7.6932 -2.6499 18 9 -1.7838 -8.7286 -1.7571 19 9 -3.1871 -6.9765 -2.1814 20 6 -2.3995 -8.2824 -4.0254 21 9 -1.2931 -8.9993 -4.4934 22 9 -3.5002 -9.1397 -3.9219 23 6 1.1656 -5.8350 1.0701 24 6 2.5777 -5.4746 1.5748 25 6 2.6789 -3.9458 1.3564 26 6 1.9332 -3.7264 -0.0049 27 1 2.5710 -3.8780 -0.8757 28 1 -0.4850 0.8400 0.0004 29 1 -0.5991 -1.7502 0.6063 30 1 -0.5251 -2.4951 -1.0200 31 1 -0.3554 -3.8775 1.7131 32 1 -1.3619 -4.3249 0.2953 33 1 1.0040 -5.0719 -2.0338 34 1 -1.1083 -5.9496 -3.4585 35 1 -0.0145 -7.3143 -3.1281 36 1 -2.6308 -7.4760 -4.7213 37 1 0.4615 -5.8383 1.9021 38 1 1.1790 -6.8130 0.5890 39 1 2.6779 -5.7163 2.6329 40 1 3.3362 -5.9965 0.9916 41 1 2.1802 -3.4080 2.1628 42 1 3.7212 -3.6368 1.2766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755702479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:17 Heat of formation + Delta-G solvation = -206.419454 kcal Electronic energy + Delta-G solvation = -31230.989596 eV Core-core repulsion = 26325.237656 eV Total energy + Delta-G solvation = -4905.751939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.09889 -48.82954 -47.74142 -47.19991 -40.25983 -38.19408 -34.32246 -33.59863 -32.94344 -31.45448 -29.83240 -28.04335 -26.72872 -25.87338 -23.87845 -22.91125 -21.32423 -20.02534 -19.79599 -18.96104 -18.76373 -18.55437 -17.97417 -17.07569 -17.00138 -16.61091 -16.41845 -15.58107 -15.26227 -14.90294 -14.73518 -14.46927 -14.24238 -14.07582 -13.96284 -13.92289 -13.60290 -13.58128 -13.20550 -13.13410 -12.96050 -12.56011 -12.43999 -12.20766 -11.84049 -11.70565 -11.21865 -11.14793 -11.01299 -10.86852 -10.70903 -10.56258 -10.22633 -10.14253 -10.02509 -9.83275 -9.68247 -9.46401 -8.69958 -8.64937 -6.90109 -5.68544 -3.12181 2.26974 2.63021 3.06251 3.31402 3.36630 3.40668 3.41486 3.42752 3.59506 3.73284 4.33213 4.41847 4.43784 4.64926 4.88895 4.97183 5.00463 5.11457 5.28083 5.47863 5.59730 5.77406 5.81502 5.94804 6.02075 6.11132 6.18917 6.29753 6.37897 6.50181 6.56357 6.73257 6.74951 6.93921 7.05326 7.49007 7.59694 7.62478 7.83861 8.29165 8.32938 9.17222 9.78247 10.41990 11.33810 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003140 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.942592 B = 8916.424540 C = 9667.429390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.152 3.848 11 C -0.143 4.143 12 C 0.160 3.840 13 N -0.700 5.700 14 C 0.516 3.484 15 O -0.517 6.517 16 C -0.196 4.196 17 C 0.274 3.726 18 F -0.170 7.170 19 F -0.165 7.165 20 C 0.235 3.765 21 F -0.181 7.181 22 F -0.183 7.183 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.163 3.837 27 H 0.049 0.951 28 H 0.253 0.747 29 H 0.108 0.892 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -15.508 -8.203 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.182 4.182 12 C 0.074 3.926 13 N -0.350 5.350 14 C 0.300 3.700 15 O -0.393 6.393 16 C -0.237 4.237 17 C 0.235 3.765 18 F -0.151 7.151 19 F -0.146 7.146 20 C 0.180 3.820 21 F -0.163 7.163 22 F -0.164 7.164 23 C -0.150 4.150 24 C -0.162 4.162 25 C -0.169 4.169 26 C 0.054 3.946 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.594 -15.503 -7.478 17.286 hybrid contribution 0.654 0.790 -0.469 1.128 sum -0.940 -14.714 -7.947 16.749 Atomic orbital electron populations 1.69789 1.04884 1.24893 1.57255 1.24780 0.95663 0.97679 1.02318 0.86178 0.78411 0.83163 0.77869 1.21287 1.21618 1.21142 1.18986 0.90421 0.82301 1.43403 0.90550 1.44514 1.01800 0.99183 1.86414 1.21977 0.84325 0.93040 0.97864 1.23347 0.96776 0.97933 1.00145 1.21744 0.97133 0.92426 0.81329 1.45817 1.32077 1.45349 1.11743 1.19694 0.81218 0.79860 0.89238 1.90796 1.48918 1.59461 1.40084 1.22849 0.98740 1.01366 1.00719 1.21511 0.85715 0.82981 0.86265 1.93130 1.93297 1.58649 1.70025 1.93143 1.54150 1.77863 1.89457 1.22877 0.74487 0.88885 0.95761 1.93059 1.53421 1.80566 1.89213 1.93076 1.53330 1.73031 1.96935 1.22268 0.96863 0.97478 0.98346 1.22347 0.96303 0.97359 1.00240 1.23255 1.00370 0.93812 0.99466 1.22163 0.91499 0.85757 0.95177 0.93333 0.93664 0.87417 0.97377 0.91319 0.91278 0.76525 0.85083 0.85066 0.83821 0.91096 0.92346 0.92217 0.92337 0.90720 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.04 10.07 55.49 0.56 -25.48 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -5.84 10.04 -15.06 -0.15 -6.00 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.60 -14.13 3.04 -159.89 -0.49 -14.62 16 10 C 0.15 3.61 5.90 -2.58 -0.02 3.60 16 11 C -0.14 -2.86 5.71 -24.73 -0.14 -3.00 16 12 C 0.16 2.73 0.74 -129.36 -0.10 2.63 16 13 N -0.70 -9.95 5.22 -45.35 -0.24 -10.19 16 14 C 0.52 7.27 6.79 -10.99 -0.07 7.20 16 15 O -0.52 -9.30 12.65 5.56 0.07 -9.23 16 16 C -0.20 -1.78 5.18 -27.88 -0.14 -1.92 16 17 C 0.27 2.99 1.40 -26.73 -0.04 2.95 16 18 F -0.17 -2.39 16.10 2.25 0.04 -2.35 16 19 F -0.17 -2.23 16.13 2.25 0.04 -2.19 16 20 C 0.23 1.84 4.83 37.16 0.18 2.02 16 21 F -0.18 -1.52 16.80 2.25 0.04 -1.48 16 22 F -0.18 -1.88 17.30 2.25 0.04 -1.84 16 23 C -0.11 -1.75 5.30 -25.79 -0.14 -1.89 16 24 C -0.12 -1.80 6.84 -25.16 -0.17 -1.97 16 25 C -0.13 -2.25 6.30 -23.78 -0.15 -2.40 16 26 C 0.16 3.08 3.78 -64.49 -0.24 2.84 16 27 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.11 2.93 5.82 -51.93 -0.30 2.63 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 1.39 7.63 -51.93 -0.40 0.99 16 32 H 0.07 1.41 6.53 -51.93 -0.34 1.07 16 33 H 0.40 4.72 8.47 -40.82 -0.35 4.37 16 34 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.13 0.84 7.80 -51.93 -0.41 0.43 16 36 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.18 7.38 -51.93 -0.38 0.80 16 38 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -32.48 348.76 -6.47 -38.95 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.48 Total: 3.09 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.28 Total: 3.74 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.16 Total: -50.29 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.15 Total: -7.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.48 -6.47 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755702479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.465 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds