Wall clock time and date at job start Tue Mar 31 2020 20:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.47366 * 125.58107 * 0.02562 * 9 7 2 11 11 C 1.54872 * 104.82404 * 204.68668 * 10 9 7 12 12 C 1.54919 * 101.76399 * 322.92891 * 11 10 9 13 13 N 1.46500 * 112.33112 * 273.78155 * 12 11 10 14 14 C 1.34771 * 120.00294 * 298.98607 * 13 12 11 15 15 O 1.21281 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99935 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47071 * 180.02562 * 16 14 13 18 18 F 1.39905 * 109.47185 * 299.99832 * 17 16 14 19 19 F 1.39896 * 109.47192 * 60.00119 * 17 16 14 20 20 C 1.53000 * 109.47104 * 180.02562 * 17 16 14 21 21 F 1.39896 * 109.47417 * 59.99745 * 20 17 16 22 22 F 1.39896 * 109.47144 * 179.97438 * 20 17 16 23 23 C 1.53579 * 109.08427 * 148.66945 * 12 11 10 24 24 C 1.54224 * 106.67544 * 246.92229 * 23 12 11 25 25 C 1.54759 * 104.15350 * 24.94436 * 24 23 12 26 26 C 1.46986 * 125.57872 * 179.71466 * 9 7 2 27 27 H 1.08999 * 111.81180 * 300.94129 * 26 9 7 28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.36987 * 323.52185 * 10 9 7 30 30 H 1.09002 * 110.36796 * 85.85158 * 10 9 7 31 31 H 1.08998 * 110.96695 * 81.05080 * 11 10 9 32 32 H 1.09001 * 110.96393 * 204.81021 * 11 10 9 33 33 H 0.97001 * 119.99191 * 118.99044 * 13 12 11 34 34 H 1.08994 * 109.47346 * 300.00466 * 16 14 13 35 35 H 1.09001 * 109.46955 * 60.00327 * 16 14 13 36 36 H 1.09001 * 109.46640 * 299.99800 * 20 17 16 37 37 H 1.09003 * 110.02202 * 6.23091 * 23 12 11 38 38 H 1.09003 * 110.02002 * 127.57780 * 23 12 11 39 39 H 1.09002 * 110.49183 * 143.60431 * 24 23 12 40 40 H 1.08993 * 110.49813 * 266.13928 * 24 23 12 41 41 H 1.09004 * 110.67206 * 80.62237 * 25 24 23 42 42 H 1.09006 * 110.66617 * 203.58705 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 -0.1411 -2.5313 -0.0005 11 6 -0.4037 -3.9235 0.6252 12 6 0.7721 -4.7539 0.0526 13 7 0.4662 -5.3172 -1.2647 14 6 -0.5623 -6.1763 -1.4079 15 8 -1.2349 -6.4828 -0.4464 16 6 -0.8766 -6.7562 -2.7630 17 6 -2.0808 -7.6932 -2.6499 18 9 -1.7838 -8.7286 -1.7571 19 9 -3.1871 -6.9765 -2.1814 20 6 -2.3995 -8.2824 -4.0254 21 9 -1.2931 -8.9993 -4.4934 22 9 -3.5002 -9.1397 -3.9219 23 6 1.1656 -5.8350 1.0701 24 6 2.5777 -5.4746 1.5748 25 6 2.6789 -3.9458 1.3564 26 6 1.9332 -3.7264 -0.0049 27 1 2.5710 -3.8780 -0.8757 28 1 -0.4850 0.8400 0.0004 29 1 -0.5991 -1.7502 0.6063 30 1 -0.5251 -2.4951 -1.0200 31 1 -0.3554 -3.8775 1.7131 32 1 -1.3619 -4.3249 0.2953 33 1 1.0040 -5.0719 -2.0338 34 1 -1.1083 -5.9496 -3.4585 35 1 -0.0145 -7.3143 -3.1281 36 1 -2.6308 -7.4760 -4.7213 37 1 0.4615 -5.8383 1.9021 38 1 1.1790 -6.8130 0.5890 39 1 2.6779 -5.7163 2.6329 40 1 3.3362 -5.9965 0.9916 41 1 2.1802 -3.4080 2.1628 42 1 3.7212 -3.6368 1.2766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755702479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:16 Heat of formation + Delta-G solvation = -227.218450 kcal Electronic energy + Delta-G solvation = -31231.891508 eV Core-core repulsion = 26325.237656 eV Total energy + Delta-G solvation = -4906.653851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.84919 -49.61745 -48.49231 -48.04735 -41.58886 -39.54724 -36.04642 -34.81096 -33.84926 -33.25094 -31.44298 -28.93735 -28.37726 -27.21721 -25.71547 -23.77683 -22.62516 -21.59366 -21.12280 -20.26690 -19.51164 -19.42251 -18.89715 -18.72185 -17.75200 -17.74534 -17.36487 -16.90663 -16.75510 -16.33878 -15.76678 -15.55124 -15.31787 -15.18339 -15.12481 -14.92344 -14.66500 -14.60421 -14.55598 -14.47042 -13.93320 -13.87595 -13.62224 -13.37253 -13.16424 -13.08397 -12.90532 -12.78290 -12.62324 -12.30069 -12.06939 -11.90405 -11.87131 -11.69919 -11.59561 -11.47954 -11.25980 -10.82388 -10.69677 -9.98233 -8.84712 -7.72128 -5.16889 1.49568 1.51806 1.53454 1.57634 1.58095 2.10146 2.52456 2.54686 2.79901 2.93970 3.02273 3.37216 3.38353 3.63274 3.73770 3.74842 3.82660 3.95625 3.96428 4.30666 4.33629 4.35094 4.41085 4.47545 4.58941 4.66768 4.78900 4.89192 4.97787 5.08702 5.17041 5.22190 5.32051 5.49112 5.52361 5.65853 5.68104 5.85153 6.32636 6.52505 7.13526 7.21823 7.82302 8.45954 9.28883 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003140 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.942592 B = 8916.424540 C = 9667.429390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.225 4.225 8 H 0.086 0.914 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.131 4.131 12 C 0.170 3.830 13 N -0.696 5.696 14 C 0.509 3.491 15 O -0.561 6.561 16 C -0.185 4.185 17 C 0.255 3.745 18 F -0.195 7.195 19 F -0.186 7.186 20 C 0.242 3.758 21 F -0.182 7.182 22 F -0.200 7.200 23 C -0.105 4.105 24 C -0.110 4.110 25 C -0.125 4.125 26 C 0.156 3.844 27 H 0.067 0.933 28 H 0.244 0.756 29 H 0.068 0.932 30 H -0.013 1.013 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.415 0.585 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.199 0.801 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -16.793 -9.940 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.170 4.170 12 C 0.083 3.917 13 N -0.347 5.347 14 C 0.296 3.704 15 O -0.440 6.440 16 C -0.225 4.225 17 C 0.217 3.783 18 F -0.176 7.176 19 F -0.167 7.167 20 C 0.188 3.812 21 F -0.164 7.164 22 F -0.181 7.181 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.166 4.166 26 C 0.049 3.951 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.005 0.995 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.188 0.812 35 H 0.184 0.816 36 H 0.215 0.785 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.445 -16.827 -9.242 19.203 hybrid contribution 0.027 1.160 0.099 1.165 sum 0.472 -15.667 -9.142 18.146 Atomic orbital electron populations 1.70055 1.06283 1.24778 1.59010 1.25564 0.96408 1.00830 1.03164 0.85190 0.77050 0.79143 0.78172 1.20234 1.22650 1.20547 1.19372 0.91029 0.83309 1.41711 0.89634 1.44688 1.01854 1.00574 1.86374 1.21610 0.84652 0.93867 0.96032 1.23129 0.97978 0.96515 0.99427 1.21482 0.94647 0.92336 0.83192 1.45723 1.32680 1.45249 1.11077 1.20529 0.80080 0.78995 0.90819 1.90785 1.50169 1.60832 1.42172 1.22934 0.99241 1.02328 0.97987 1.22189 0.85830 0.82967 0.87282 1.93074 1.93459 1.59773 1.71299 1.93097 1.55326 1.78342 1.89938 1.23222 0.73737 0.89577 0.94642 1.93059 1.53558 1.80818 1.88916 1.93043 1.54290 1.73802 1.96946 1.22194 0.97479 0.97236 0.97473 1.22288 0.95870 0.94894 1.01706 1.23126 1.00128 0.95944 0.97354 1.22425 0.92360 0.83757 0.96582 0.91545 0.94646 0.91365 0.99474 0.92231 0.91994 0.74824 0.81244 0.81644 0.78471 0.92513 0.91461 0.90732 0.89703 0.93576 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.79 10.07 21.65 0.22 -55.57 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 44.30 29.55 68.60 2.03 46.33 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.23 -11.82 10.04 84.04 0.84 -10.98 16 8 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -29.19 3.04 -659.78 -2.01 -31.20 16 10 C 0.16 8.05 5.90 86.85 0.51 8.56 16 11 C -0.13 -5.39 5.71 31.89 0.18 -5.20 16 12 C 0.17 5.66 0.74 5.19 0.00 5.66 16 13 N -0.70 -18.38 5.22 -415.77 -2.17 -20.55 16 14 C 0.51 13.46 6.79 87.66 0.60 14.06 16 15 O -0.56 -20.02 12.65 -3.03 -0.04 -20.06 16 16 C -0.19 -2.75 5.18 29.85 0.15 -2.59 16 17 C 0.26 5.08 1.40 30.60 0.04 5.12 16 18 F -0.20 -5.34 16.10 44.97 0.72 -4.61 16 19 F -0.19 -4.89 16.13 44.97 0.73 -4.16 16 20 C 0.24 3.05 4.83 71.98 0.35 3.40 16 21 F -0.18 -2.45 16.80 44.97 0.76 -1.69 16 22 F -0.20 -3.79 17.30 44.97 0.78 -3.01 16 23 C -0.10 -3.14 5.30 31.20 0.17 -2.97 16 24 C -0.11 -2.85 6.84 31.61 0.22 -2.64 16 25 C -0.13 -4.17 6.30 32.51 0.20 -3.97 16 26 C 0.16 5.68 3.78 46.95 0.18 5.86 16 27 H 0.07 2.24 7.95 -2.39 -0.02 2.22 16 28 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.07 3.93 5.82 -2.39 -0.01 3.91 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.06 2.52 7.63 -2.39 -0.02 2.50 16 32 H 0.06 2.62 6.53 -2.39 -0.02 2.61 16 33 H 0.41 8.52 8.47 -92.71 -0.78 7.73 16 34 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.17 1.35 7.80 -2.39 -0.02 1.33 16 36 H 0.20 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 1.86 7.38 -2.39 -0.02 1.84 16 38 H 0.07 1.92 7.60 -2.39 -0.02 1.90 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.79 8.11 -2.38 -0.02 1.77 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -74.90 348.76 5.21 -69.69 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.29 Total: 13.75 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 3.91 Total: 11.09 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.96 Total: -107.32 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.04 Total: -20.06 kcal Atomic # 9 Polarization: -16.46 SS G_CDS: 2.98 Total: -13.48 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.90 5.21 -69.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755702479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.526 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds