Wall clock time and date at job start Tue Mar 31 2020 21:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00009 * 2 1 4 4 C 1.50698 * 109.47449 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99711 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99882 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00134 * 359.97438 * 6 4 3 8 8 C 1.46501 * 119.99502 * 179.97438 * 6 4 3 9 9 C 1.50701 * 109.47164 * 90.00424 * 8 6 4 10 10 O 1.21297 * 119.99912 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00505 * 180.02562 * 9 8 6 12 12 C 1.46505 * 119.99822 * 4.73018 * 11 9 8 13 13 C 1.50700 * 109.47457 * 270.00654 * 12 11 9 14 14 H 1.08002 * 119.99601 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00123 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00189 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99940 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47150 * 90.00022 * 17 15 13 19 19 H 1.48501 * 109.46988 * 209.99776 * 17 15 13 20 20 H 1.48493 * 109.47457 * 330.00099 * 17 15 13 21 21 C 1.40029 * 120.00429 * 184.73644 * 11 9 8 22 22 C 1.38849 * 120.04594 * 67.63838 * 21 11 9 23 23 C 1.38112 * 119.95571 * 179.72453 * 22 21 11 24 24 C 1.38469 * 120.04443 * 0.55038 * 23 22 21 25 25 F 1.35099 * 119.95758 * 179.70475 * 24 23 22 26 26 C 1.38476 * 120.09159 * 359.72205 * 24 23 22 27 27 C 1.38115 * 120.04287 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46868 * 299.99481 * 1 2 3 29 29 H 1.08992 * 109.47455 * 59.99635 * 1 2 3 30 30 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47043 * 59.99995 * 3 2 1 32 32 H 1.08999 * 109.46956 * 300.00532 * 3 2 1 33 33 H 1.08994 * 109.47318 * 270.00179 * 7 6 4 34 34 H 1.08998 * 109.47143 * 30.00573 * 7 6 4 35 35 H 1.09002 * 109.47005 * 150.00130 * 7 6 4 36 36 H 1.08997 * 109.47512 * 329.99601 * 8 6 4 37 37 H 1.09008 * 109.46893 * 209.99204 * 8 6 4 38 38 H 1.08996 * 109.46793 * 30.00439 * 12 11 9 39 39 H 1.09004 * 109.47073 * 150.00226 * 12 11 9 40 40 H 0.96995 * 120.00486 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.01859 * 359.97438 * 22 21 11 42 42 H 1.08005 * 119.97913 * 180.25059 * 23 22 21 43 43 H 1.08003 * 119.98106 * 179.97438 * 26 24 23 44 44 H 1.07998 * 120.02353 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 3.6463 3.6195 0.0003 8 6 5.7368 2.1813 -0.0003 9 6 6.2376 2.1422 -1.4211 10 8 5.4518 2.2044 -2.3430 11 7 7.5584 2.0372 -1.6675 12 6 8.4984 1.8567 -0.5584 13 6 8.9544 3.2045 -0.0619 14 1 8.5816 4.1055 -0.5264 15 6 9.8473 3.2875 0.9853 16 7 10.2457 4.4637 1.4183 17 14 10.4915 1.7292 1.7891 18 1 11.7284 1.2890 1.0951 19 1 10.7945 1.9980 3.2178 20 1 9.4637 0.6616 1.6935 21 6 8.0324 2.1007 -2.9836 22 6 7.9443 3.2882 -3.6978 23 6 8.4176 3.3503 -4.9938 24 6 8.9693 2.2262 -5.5849 25 9 9.4263 2.2873 -6.8548 26 6 9.0530 1.0394 -4.8764 27 6 8.5856 0.9745 -3.5784 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.4900 3.9479 -1.0272 34 1 2.6866 3.5646 0.5142 35 1 4.2935 4.3301 0.5144 36 1 6.0288 1.2653 0.5132 37 1 6.1693 3.0397 0.5138 38 1 8.0056 1.3189 0.2515 39 1 9.3606 1.2853 -0.9022 40 1 10.8742 4.5221 2.1548 41 1 7.5096 4.1638 -3.2386 42 1 8.3529 4.2749 -5.5482 43 1 9.4833 0.1636 -5.3394 44 1 8.6506 0.0486 -3.0263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559717455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:01 Heat of formation + Delta-G solvation = -109.945546 kcal Electronic energy + Delta-G solvation = -29623.253331 eV Core-core repulsion = 25263.541554 eV Total energy + Delta-G solvation = -4359.711776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.66930 -40.37865 -39.54319 -38.02994 -37.35408 -35.36915 -35.05797 -32.67036 -30.91802 -30.50239 -29.33858 -28.06496 -27.40380 -26.46479 -25.31038 -23.15281 -22.47182 -22.25835 -19.96804 -18.74695 -17.51227 -17.43563 -17.18824 -17.03510 -16.65199 -16.45164 -16.16967 -15.92169 -15.44391 -15.34604 -14.72375 -14.60912 -14.39770 -14.11595 -13.91393 -13.35373 -13.30829 -13.04955 -12.99835 -12.85877 -12.78078 -12.45882 -12.34194 -12.26098 -12.10646 -11.86985 -11.66859 -11.49718 -11.25269 -10.87833 -10.77520 -10.39295 -9.97367 -9.79153 -9.72109 -9.66221 -8.86741 -8.82669 -8.70100 -8.49237 -7.78541 -6.32740 -4.36377 1.37159 1.50305 2.57065 2.77195 3.07303 3.12999 3.20488 3.23238 3.55303 3.84597 3.88208 4.18218 4.49373 4.54291 4.83206 4.97183 4.99674 4.99922 5.05442 5.08121 5.12242 5.13253 5.17511 5.43537 5.48888 5.50067 5.55722 5.64040 5.72015 5.77120 5.85571 6.11632 6.31491 6.32678 6.36442 6.42732 6.50822 6.74103 6.80994 6.92586 7.27894 7.38066 7.39110 7.83318 8.21449 8.25489 8.64741 8.72492 9.25440 10.79121 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.004282 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.781430 B = 6537.914542 C = 9031.077469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.518 6.518 6 N -0.598 5.598 7 C 0.076 3.924 8 C 0.103 3.897 9 C 0.512 3.488 10 O -0.546 6.546 11 N -0.555 5.555 12 C 0.207 3.793 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.081 3.919 16 N -0.886 5.886 17 Si 0.867 3.133 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.166 3.834 22 C -0.074 4.074 23 C -0.143 4.143 24 C 0.081 3.919 25 F -0.146 7.146 26 C -0.144 4.144 27 C -0.098 4.098 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -2.282 -3.621 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.305 3.695 5 O -0.393 6.393 6 N -0.332 5.332 7 C -0.067 4.067 8 C -0.023 4.023 9 C 0.300 3.700 10 O -0.423 6.423 11 N -0.284 5.284 12 C 0.087 3.913 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.123 4.123 16 N -0.523 5.523 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C 0.075 3.925 22 C -0.094 4.094 23 C -0.163 4.163 24 C 0.062 3.938 25 F -0.125 7.125 26 C -0.164 4.164 27 C -0.118 4.118 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.765 -2.923 -3.946 13.677 hybrid contribution 0.553 -0.213 0.324 0.676 sum -12.211 -3.136 -3.622 13.117 Atomic orbital electron populations 1.22822 0.80591 1.03194 1.00021 1.88024 1.19596 1.25461 1.95392 1.22267 0.91787 0.86718 1.02422 1.20153 0.88612 0.84208 0.76486 1.90719 1.74441 1.26217 1.47911 1.47363 1.05785 1.06410 1.73644 1.21901 0.98384 0.83819 1.02550 1.21442 0.79241 1.07010 0.94597 1.21047 0.81539 0.75443 0.91977 1.90643 1.55061 1.50278 1.46333 1.45626 1.06716 1.70833 1.05193 1.20024 0.88579 0.98686 0.84014 1.21273 1.27806 0.91806 1.17586 0.90139 1.24821 0.95333 0.95994 0.96166 1.69868 1.32213 1.23315 1.26879 0.86978 0.80356 0.83895 0.79426 1.19742 1.20678 1.18612 1.17571 0.96902 0.92739 0.85332 1.21094 0.97618 0.97355 0.93298 1.20939 1.01449 0.97901 0.95971 1.17629 1.00905 0.95416 0.79827 1.91457 1.87054 1.97112 1.36858 1.20881 1.03428 0.97112 0.94967 1.21077 0.98651 0.98044 0.93985 0.93893 0.93850 0.89194 0.90274 0.90087 0.91932 0.91205 0.90118 0.86896 0.85311 0.94131 0.94689 0.92171 0.85030 0.84801 0.84801 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -5.03 10.24 -55.14 -0.56 -5.60 16 3 C 0.05 0.57 4.97 36.00 0.18 0.75 16 4 C 0.52 8.50 7.75 -10.99 -0.09 8.42 16 5 O -0.52 -10.81 16.08 -14.35 -0.23 -11.05 16 6 N -0.60 -9.01 2.36 -182.96 -0.43 -9.45 16 7 C 0.08 0.81 10.29 59.85 0.62 1.42 16 8 C 0.10 1.78 4.60 -5.19 -0.02 1.75 16 9 C 0.51 10.18 7.59 -10.99 -0.08 10.10 16 10 O -0.55 -11.84 16.18 5.54 0.09 -11.75 16 11 N -0.56 -11.18 2.51 -114.71 -0.29 -11.47 16 12 C 0.21 4.38 3.95 -5.19 -0.02 4.36 16 13 C -0.55 -13.42 9.71 -34.44 -0.33 -13.75 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -24.38 13.96 55.43 0.77 -23.61 16 17 Si 0.87 19.04 27.47 -169.99 -4.67 14.37 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 21 C 0.17 3.18 4.76 -83.66 -0.40 2.78 16 22 C -0.07 -1.33 9.53 -39.40 -0.38 -1.71 16 23 C -0.14 -2.26 10.02 -39.54 -0.40 -2.66 16 24 C 0.08 1.28 7.30 -39.41 -0.29 0.99 16 25 F -0.15 -2.22 17.26 2.25 0.04 -2.18 16 26 C -0.14 -2.20 10.02 -39.54 -0.40 -2.59 16 27 C -0.10 -1.66 9.69 -39.40 -0.38 -2.04 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.68 7.40 -51.93 -0.38 0.29 16 32 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 35 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.11 2.03 6.54 -51.93 -0.34 1.69 16 37 H 0.13 2.14 7.67 -51.92 -0.40 1.74 16 38 H 0.04 0.83 5.53 -51.93 -0.29 0.55 16 39 H 0.04 0.74 7.29 -51.93 -0.38 0.36 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 42 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -33.48 381.49 -6.43 -39.91 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.93 Total: 3.90 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -0.97 Total: 11.17 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.05 Total: -44.53 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.71 Total: -28.39 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.67 Total: 14.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.48 -6.43 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559717455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.032 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds