Wall clock time and date at job start Tue Mar 31 2020 21:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35790 * 117.00138 * 2 1 4 4 C 1.40339 * 120.90189 * 270.21859 * 3 2 1 5 5 O 1.35562 * 120.49364 * 0.02778 * 4 3 2 6 6 N 1.32407 * 119.02327 * 180.29605 * 4 3 2 7 7 C 1.32495 * 120.97783 * 359.72847 * 6 4 3 8 8 O 1.35541 * 118.99696 * 180.02562 * 7 6 4 9 9 N 1.31858 * 122.00741 * 0.02562 * 7 6 4 10 10 C 1.33530 * 120.87606 * 359.97438 * 9 7 6 11 11 C 1.48066 * 120.53689 * 180.02562 * 10 9 7 12 12 O 1.21530 * 119.99394 * 179.97438 * 11 10 9 13 13 N 1.34765 * 120.00405 * 0.02562 * 11 10 9 14 14 C 1.47426 * 125.65028 * 0.02562 * 13 11 10 15 15 C 1.54910 * 104.93229 * 155.79596 * 14 13 11 16 16 C 1.55443 * 101.44951 * 37.00444 * 15 14 13 17 17 H 1.09000 * 110.85764 * 82.96250 * 16 15 14 18 18 N 1.46499 * 110.70967 * 206.14588 * 16 15 14 19 19 C 1.46500 * 120.00082 * 55.00266 * 18 16 15 20 20 C 1.36936 * 120.00137 * 235.00292 * 18 16 15 21 21 H 1.08003 * 119.99966 * 23.44471 * 20 18 16 22 22 C 1.38805 * 120.00369 * 203.44030 * 20 18 16 23 23 N 1.31628 * 119.99680 * 14.52822 * 22 20 18 24 24 Si 1.86797 * 120.00645 * 194.52746 * 22 20 18 25 25 H 1.48498 * 109.47144 * 59.99985 * 24 22 20 26 26 H 1.48498 * 109.47421 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46946 * 300.00437 * 24 22 20 28 28 C 1.47023 * 125.64904 * 179.97438 * 13 11 10 29 29 H 1.08999 * 109.47289 * 300.00025 * 1 2 3 30 30 H 1.08995 * 109.47071 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 32 32 H 0.96702 * 113.99485 * 270.27116 * 5 4 3 33 33 H 0.96698 * 113.99747 * 270.02098 * 8 7 6 34 34 H 1.08998 * 110.36619 * 274.69106 * 14 13 11 35 35 H 1.09001 * 110.36330 * 36.89997 * 14 13 11 36 36 H 1.08993 * 111.00539 * 155.14102 * 15 14 13 37 37 H 1.08999 * 111.00348 * 278.99249 * 15 14 13 38 38 H 1.08994 * 109.47186 * 95.18776 * 19 18 16 39 39 H 1.09000 * 109.47329 * 215.19342 * 19 18 16 40 40 H 1.09010 * 109.46843 * 335.18567 * 19 18 16 41 41 H 0.97001 * 119.99718 * 179.97438 * 23 22 20 42 42 H 1.08996 * 109.88517 * 300.49718 * 28 13 11 43 43 H 1.08997 * 109.88215 * 61.66701 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3686 1.8541 -1.2042 5 8 2.0694 1.2782 -2.3943 6 7 2.9749 3.0304 -1.1608 7 6 3.2719 3.6023 -0.0031 8 8 3.8923 4.8074 -0.0055 9 7 2.9822 3.0349 1.1514 10 6 2.3710 1.8486 1.1976 11 6 2.0488 1.2185 2.4982 12 8 1.4919 0.1387 2.5287 13 7 2.3721 1.8427 3.6479 14 6 3.0448 3.1501 3.7561 15 6 2.6375 3.6946 5.1480 16 6 2.6283 2.3931 5.9978 17 1 3.6334 2.1450 6.3386 18 7 1.7148 2.5239 7.1356 19 6 0.3143 2.8915 6.9122 20 6 2.1699 2.3025 8.4081 21 1 3.2215 2.4065 8.6312 22 6 1.2797 1.9444 9.4111 23 7 0.0662 1.5402 9.1005 24 14 1.8039 2.0361 11.2017 25 1 2.1788 3.4333 11.5368 26 1 0.6794 1.6031 12.0695 27 1 2.9706 1.1442 11.4222 28 6 2.1115 1.3332 5.0022 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.7679 0.7064 -2.7411 33 1 4.8577 4.7527 -0.0083 34 1 4.1262 3.0262 3.6988 35 1 2.6984 3.8211 2.9700 36 1 3.3768 4.4027 5.5221 37 1 1.6465 4.1474 5.1157 38 1 -0.2950 1.9890 6.8643 39 1 -0.0316 3.5203 7.7326 40 1 0.2277 3.4388 5.9735 41 1 -0.5558 1.2897 9.8015 42 1 1.0410 1.1835 5.1423 43 1 2.6423 0.3933 5.1531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972722087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:51 Heat of formation + Delta-G solvation = -35.373399 kcal Electronic energy + Delta-G solvation = -30171.795335 eV Core-core repulsion = 25835.237212 eV Total energy + Delta-G solvation = -4336.558124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99405 -39.72918 -39.13762 -38.05988 -37.32947 -36.98877 -34.85290 -33.79974 -31.60972 -30.61154 -29.74035 -28.17090 -27.16385 -26.09294 -25.78145 -24.07062 -23.35649 -22.32357 -20.91189 -19.42623 -19.26130 -18.94163 -18.54255 -17.97722 -17.17921 -17.04834 -16.46775 -15.96808 -15.57771 -15.36420 -15.15152 -14.83629 -14.36566 -14.16774 -13.56139 -13.38764 -13.33535 -13.14704 -12.69493 -12.67036 -12.50832 -12.19291 -12.14830 -11.87436 -11.67344 -11.36924 -11.09947 -10.92765 -10.85827 -10.74709 -10.55465 -10.47993 -10.29931 -10.26643 -9.86625 -9.79151 -9.51595 -9.25808 -8.58500 -8.34832 -6.82265 -5.77784 -3.25925 -0.07060 0.13306 2.14125 2.53769 2.88851 3.01388 3.07708 3.36808 3.42615 3.43254 3.44655 3.89519 4.29625 4.37306 4.45472 4.81094 5.08488 5.11042 5.22080 5.25708 5.30763 5.41623 5.56725 5.59295 5.67614 5.89394 5.93762 5.99198 6.14944 6.34553 6.39985 6.51912 6.61169 6.73678 6.80019 6.86168 6.86708 7.05110 7.29879 7.33387 7.63960 7.68638 7.75999 8.12949 8.33797 9.16499 9.79212 10.28549 11.26269 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.002835 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.130343 B = 9873.681710 C =10832.935832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.300 6.300 3 C 0.029 3.971 4 C 0.370 3.630 5 O -0.462 6.462 6 N -0.525 5.525 7 C 0.509 3.491 8 O -0.449 6.449 9 N -0.484 5.484 10 C 0.153 3.847 11 C 0.570 3.430 12 O -0.511 6.511 13 N -0.584 5.584 14 C 0.102 3.898 15 C -0.156 4.156 16 C 0.172 3.828 17 H 0.080 0.920 18 N -0.584 5.584 19 C 0.158 3.842 20 C -0.264 4.264 21 H 0.070 0.930 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.086 3.914 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.414 0.586 33 H 0.415 0.585 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.003 0.997 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 2.087 -21.605 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.213 6.213 3 C -0.023 4.023 4 C 0.179 3.821 5 O -0.270 6.270 6 N -0.263 5.263 7 C 0.205 3.795 8 O -0.253 6.253 9 N -0.215 5.215 10 C 0.007 3.993 11 C 0.354 3.646 12 O -0.386 6.386 13 N -0.316 5.316 14 C -0.021 4.021 15 C -0.196 4.196 16 C 0.062 3.938 17 H 0.098 0.902 18 N -0.304 5.304 19 C 0.014 3.986 20 C -0.393 4.393 21 H 0.088 0.912 22 C -0.193 4.193 23 N -0.546 5.546 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.038 4.038 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.274 0.726 33 H 0.275 0.725 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.832 2.615 -21.418 22.352 hybrid contribution 0.580 -0.848 0.694 1.240 sum 6.412 1.767 -20.724 21.765 Atomic orbital electron populations 1.23050 0.76937 1.04229 1.00632 1.86009 1.21021 1.20762 1.93494 1.20524 1.01231 0.89245 0.91337 1.19616 0.90222 0.86661 0.85616 1.84729 1.44529 1.64658 1.33065 1.67301 1.15717 1.10935 1.32388 1.19829 0.92023 0.85521 0.82126 1.84783 1.25577 1.19973 1.94929 1.68402 1.14839 1.09084 1.29191 1.22160 0.93520 0.88600 0.95044 1.17092 0.81099 0.84817 0.81555 1.90860 1.42053 1.19870 1.85811 1.48437 1.56148 1.21386 1.05655 1.22674 0.96700 0.83799 0.98945 1.23457 1.02407 0.99782 0.93960 1.21452 0.94860 0.90612 0.86898 0.90205 1.43914 1.06715 1.78613 1.01170 1.20808 0.84588 0.97780 0.95474 1.19168 0.93876 1.41806 0.84463 0.91221 1.25062 0.96727 0.98822 0.98706 1.70069 1.06301 1.46548 1.31685 0.86309 0.77460 0.77937 0.84650 1.20995 1.21637 1.20850 1.23090 1.02536 0.99212 0.78986 0.92793 0.93504 0.87914 0.72574 0.72461 0.91649 0.88511 0.90319 0.90596 0.94914 0.93993 0.97807 0.93545 0.90498 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.54 101.05 1.07 1.56 16 2 O -0.30 -3.93 8.78 -46.80 -0.41 -4.34 16 3 C 0.03 0.37 5.81 -38.29 -0.22 0.14 16 4 C 0.37 4.03 7.86 -16.51 -0.13 3.90 16 5 O -0.46 -3.86 13.42 -30.78 -0.41 -4.27 16 6 N -0.53 -5.96 10.46 -14.65 -0.15 -6.11 16 7 C 0.51 5.66 8.69 -91.49 -0.80 4.86 16 8 O -0.45 -3.87 13.64 -18.32 -0.25 -4.12 16 9 N -0.48 -6.05 6.80 -11.31 -0.08 -6.13 16 10 C 0.15 2.14 6.75 -82.60 -0.56 1.59 16 11 C 0.57 9.55 7.84 -12.23 -0.10 9.45 16 12 O -0.51 -9.76 14.52 -16.06 -0.23 -9.99 16 13 N -0.58 -9.71 3.33 -171.55 -0.57 -10.28 16 14 C 0.10 1.43 5.96 -2.53 -0.02 1.42 16 15 C -0.16 -2.48 6.61 -24.43 -0.16 -2.65 16 16 C 0.17 3.34 3.45 -65.94 -0.23 3.12 16 17 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 18 N -0.58 -14.02 2.93 -171.21 -0.50 -14.52 16 19 C 0.16 3.78 7.75 59.85 0.46 4.24 16 20 C -0.26 -6.99 9.59 -15.06 -0.14 -7.13 16 21 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 22 C 0.01 0.17 5.07 -17.43 -0.09 0.08 16 23 N -0.90 -25.85 10.82 55.49 0.60 -25.25 16 24 Si 0.91 21.37 29.58 -169.99 -5.03 16.35 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.09 1.64 6.50 -3.06 -0.02 1.62 16 29 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.41 1.29 9.06 45.56 0.41 1.70 16 33 H 0.42 1.26 9.06 45.56 0.41 1.67 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.32 5.90 -51.93 -0.31 1.02 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 38 H 0.03 0.86 7.25 -51.93 -0.38 0.49 16 39 H 0.04 1.08 7.41 -51.93 -0.39 0.69 16 40 H 0.00 0.07 6.13 -51.92 -0.32 -0.24 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 1.67 7.06 -51.93 -0.37 1.30 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -34.04 358.40 -6.28 -40.32 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.71 Total: 0.75 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: -0.93 Total: 22.20 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.70 Total: -62.29 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -1.31 Total: -22.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -6.28 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972722087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds