Wall clock time and date at job start Tue Mar 31 2020 21:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35787 * 117.00155 * 2 1 4 4 C 1.40348 * 120.90524 * 270.26075 * 3 2 1 5 5 O 1.35562 * 120.48290 * 0.02562 * 4 3 2 6 6 N 1.32400 * 119.02604 * 180.26941 * 4 3 2 7 7 C 1.32488 * 120.98048 * 359.72996 * 6 4 3 8 8 O 1.35545 * 118.99653 * 179.97438 * 7 6 4 9 9 N 1.31858 * 122.00890 * 359.97438 * 7 6 4 10 10 C 1.33532 * 120.87325 * 359.97438 * 9 7 6 11 11 C 1.48064 * 120.53884 * 179.97438 * 10 9 7 12 12 O 1.21523 * 120.00302 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99879 * 0.02562 * 11 10 9 14 14 C 1.47424 * 125.65032 * 0.03620 * 13 11 10 15 15 C 1.54910 * 104.83272 * 204.09739 * 14 13 11 16 16 C 1.55160 * 101.58066 * 322.98680 * 15 14 13 17 17 H 1.08997 * 110.87259 * 277.07182 * 16 15 14 18 18 N 1.46499 * 110.71899 * 153.86642 * 16 15 14 19 19 C 1.46504 * 119.99903 * 305.02433 * 18 16 15 20 20 C 1.36933 * 120.00116 * 125.02768 * 18 16 15 21 21 H 1.08005 * 119.99447 * 334.73862 * 20 18 16 22 22 C 1.38815 * 120.00325 * 154.74051 * 20 18 16 23 23 N 1.31622 * 119.99508 * 4.29032 * 22 20 18 24 24 Si 1.86797 * 120.00036 * 184.28747 * 22 20 18 25 25 H 1.48506 * 109.47095 * 90.00165 * 24 22 20 26 26 H 1.48502 * 109.47024 * 209.99822 * 24 22 20 27 27 H 1.48499 * 109.47257 * 330.00226 * 24 22 20 28 28 C 1.47023 * 125.64861 * 179.97438 * 13 11 10 29 29 H 1.09006 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47304 * 300.00155 * 1 2 3 31 31 H 1.08998 * 109.47230 * 60.00928 * 1 2 3 32 32 H 0.96702 * 113.99856 * 270.24723 * 5 4 3 33 33 H 0.96701 * 113.99680 * 270.01956 * 8 7 6 34 34 H 1.09002 * 110.36502 * 322.93394 * 14 13 11 35 35 H 1.08999 * 110.36758 * 85.14707 * 14 13 11 36 36 H 1.09003 * 111.00188 * 204.91623 * 15 14 13 37 37 H 1.08999 * 111.00441 * 81.06123 * 15 14 13 38 38 H 1.09002 * 109.47421 * 264.50872 * 19 18 16 39 39 H 1.09002 * 109.47415 * 24.50892 * 19 18 16 40 40 H 1.09004 * 109.46808 * 144.51152 * 19 18 16 41 41 H 0.97005 * 119.99235 * 180.02562 * 23 22 20 42 42 H 1.09004 * 109.87966 * 59.54990 * 28 13 11 43 43 H 1.09001 * 109.87956 * 298.39493 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3678 1.8546 -1.2042 5 8 2.0678 1.2789 -2.3943 6 7 2.9736 3.0311 -1.1608 7 6 3.2709 3.6028 -0.0032 8 8 3.8918 4.8077 -0.0057 9 7 2.9812 3.0355 1.1513 10 6 2.3695 1.8494 1.1975 11 6 2.0481 1.2188 2.4981 12 8 1.4917 0.1389 2.5288 13 7 2.3728 1.8426 3.6479 14 6 3.0459 3.1497 3.7560 15 6 3.7282 3.1307 5.1466 16 6 2.6793 2.3671 5.9977 17 1 1.8942 3.0402 6.3421 18 7 3.3205 1.6980 7.1324 19 6 4.4330 0.7726 6.9038 20 6 2.8799 1.9375 8.4066 21 1 2.3799 2.8661 8.6394 22 6 3.0760 0.9869 9.3990 23 7 3.7590 -0.1072 9.1365 24 14 2.3705 1.2605 11.1069 25 1 1.0021 0.6878 11.1748 26 1 3.2365 0.5943 12.1126 27 1 2.3122 2.7170 11.3908 28 6 2.1132 1.3327 5.0022 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 2.7662 0.7075 -2.7419 33 1 4.8572 4.7526 -0.0085 34 1 3.7921 3.2584 2.9688 35 1 2.3165 3.9578 3.7004 36 1 3.8751 4.1429 5.5236 37 1 4.6726 2.5877 5.1111 38 1 4.0534 -0.2483 6.8607 39 1 4.9222 1.0183 5.9612 40 1 5.1510 0.8591 7.7193 41 1 3.8957 -0.7716 9.8299 42 1 2.6133 0.3739 5.1395 43 1 1.0401 1.2186 5.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972722088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:54 Heat of formation + Delta-G solvation = -33.152671 kcal Electronic energy + Delta-G solvation = -30161.713659 eV Core-core repulsion = 25825.251834 eV Total energy + Delta-G solvation = -4336.461826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99773 -39.73570 -39.14296 -38.06574 -37.33806 -36.98979 -34.85992 -33.80475 -31.62379 -30.61549 -29.72146 -28.15783 -27.17714 -26.09310 -25.78864 -24.07187 -23.34467 -22.30160 -20.90900 -19.43023 -19.24146 -18.96238 -18.53924 -17.97956 -17.25348 -17.02419 -16.43683 -15.86228 -15.75981 -15.32953 -15.21214 -14.82774 -14.42608 -14.06737 -13.50708 -13.43281 -13.35151 -13.11405 -12.74316 -12.60205 -12.49267 -12.20486 -12.18652 -11.86195 -11.64306 -11.36902 -11.12160 -10.93052 -10.84732 -10.78393 -10.53967 -10.37062 -10.30013 -10.25413 -9.88331 -9.80099 -9.52215 -9.25062 -8.55410 -8.35102 -6.81322 -5.78864 -3.26940 -0.07446 0.13148 2.14789 2.52091 2.88556 3.00871 3.07934 3.36098 3.42210 3.43265 3.44195 3.89352 4.29200 4.36852 4.44281 4.80723 5.07319 5.09953 5.20674 5.23446 5.30488 5.43515 5.53381 5.58609 5.69955 5.89037 5.94594 5.99355 6.14579 6.34006 6.40657 6.51723 6.61576 6.73409 6.83680 6.85851 6.88218 7.04675 7.33161 7.44735 7.63619 7.73136 7.82128 8.12385 8.36060 9.19395 9.79353 10.29146 11.25168 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.002833 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.862175 B = 9882.549770 C =10778.381281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.299 6.299 3 C 0.029 3.971 4 C 0.371 3.629 5 O -0.462 6.462 6 N -0.525 5.525 7 C 0.509 3.491 8 O -0.449 6.449 9 N -0.484 5.484 10 C 0.154 3.846 11 C 0.570 3.430 12 O -0.511 6.511 13 N -0.584 5.584 14 C 0.103 3.897 15 C -0.156 4.156 16 C 0.173 3.827 17 H 0.079 0.921 18 N -0.589 5.589 19 C 0.163 3.837 20 C -0.261 4.261 21 H 0.071 0.929 22 C 0.008 3.992 23 N -0.906 5.906 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.086 3.914 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.414 0.586 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.025 0.975 39 H -0.004 1.004 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 5.221 -21.619 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.212 6.212 3 C -0.024 4.024 4 C 0.179 3.821 5 O -0.270 6.270 6 N -0.263 5.263 7 C 0.205 3.795 8 O -0.253 6.253 9 N -0.215 5.215 10 C 0.007 3.993 11 C 0.355 3.645 12 O -0.386 6.386 13 N -0.316 5.316 14 C -0.020 4.020 15 C -0.196 4.196 16 C 0.062 3.938 17 H 0.097 0.903 18 N -0.309 5.309 19 C 0.019 3.981 20 C -0.391 4.391 21 H 0.089 0.911 22 C -0.191 4.191 23 N -0.550 5.550 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.038 4.038 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.275 0.725 33 H 0.276 0.724 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.978 5.643 -21.425 22.178 hybrid contribution 0.019 -0.800 0.645 1.028 sum -0.959 4.843 -20.781 21.359 Atomic orbital electron populations 1.23039 0.77034 1.04197 1.00531 1.86016 1.20952 1.20772 1.93484 1.20524 1.01277 0.89212 0.91348 1.19616 0.90174 0.86676 0.85619 1.84721 1.44533 1.64702 1.33068 1.67297 1.15655 1.10981 1.32408 1.19835 0.92093 0.85421 0.82126 1.84782 1.25602 1.19967 1.94928 1.68414 1.14537 1.09346 1.29208 1.22157 0.93416 0.88705 0.95034 1.17093 0.81191 0.84699 0.81560 1.90855 1.42269 1.19674 1.85821 1.48433 1.56207 1.21359 1.05630 1.22669 0.96790 0.83728 0.98831 1.23421 1.00476 1.01780 0.93969 1.21380 0.93376 0.92068 0.86959 0.90254 1.43906 1.34852 1.51153 1.01031 1.20891 0.89391 0.92442 0.95332 1.19232 1.34835 0.99831 0.85171 0.91122 1.25192 0.99323 0.95506 0.99031 1.70099 1.42072 1.10015 1.32817 0.86234 0.78823 0.77582 0.83780 1.21301 1.21678 1.20463 1.23073 1.00961 1.00734 0.79069 0.87935 0.92898 0.93523 0.72524 0.72428 0.88670 0.91585 0.90374 0.90522 0.95617 0.98605 0.92625 0.93584 0.90480 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 10.54 101.05 1.07 1.55 16 2 O -0.30 -3.91 8.78 -46.79 -0.41 -4.32 16 3 C 0.03 0.36 5.81 -38.29 -0.22 0.14 16 4 C 0.37 4.03 7.86 -16.51 -0.13 3.90 16 5 O -0.46 -3.85 13.42 -30.79 -0.41 -4.26 16 6 N -0.53 -5.96 10.46 -14.65 -0.15 -6.11 16 7 C 0.51 5.67 8.69 -91.50 -0.80 4.87 16 8 O -0.45 -3.88 13.64 -18.33 -0.25 -4.13 16 9 N -0.48 -6.06 6.80 -11.31 -0.08 -6.14 16 10 C 0.15 2.15 6.75 -82.60 -0.56 1.59 16 11 C 0.57 9.53 7.84 -12.23 -0.10 9.44 16 12 O -0.51 -9.73 14.52 -16.05 -0.23 -9.96 16 13 N -0.58 -9.71 3.33 -171.55 -0.57 -10.28 16 14 C 0.10 1.45 5.96 -2.53 -0.02 1.44 16 15 C -0.16 -2.49 6.59 -24.58 -0.16 -2.65 16 16 C 0.17 3.36 3.44 -66.09 -0.23 3.13 16 17 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 18 N -0.59 -14.15 2.94 -171.38 -0.50 -14.65 16 19 C 0.16 3.95 7.70 59.85 0.46 4.41 16 20 C -0.26 -6.92 9.61 -15.06 -0.14 -7.06 16 21 H 0.07 1.81 7.82 -52.48 -0.41 1.40 16 22 C 0.01 0.22 5.38 -17.43 -0.09 0.13 16 23 N -0.91 -25.77 10.11 55.49 0.56 -25.21 16 24 Si 0.91 21.34 29.56 -169.99 -5.02 16.32 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.09 1.63 6.51 -3.06 -0.02 1.61 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 1.32 9.06 45.56 0.41 1.73 16 33 H 0.42 1.32 9.06 45.56 0.41 1.74 16 34 H 0.10 1.25 5.91 -51.93 -0.31 0.94 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.30 6.14 -51.93 -0.32 0.98 16 38 H 0.03 0.68 7.38 -51.93 -0.38 0.29 16 39 H 0.00 -0.09 6.13 -51.93 -0.32 -0.41 16 40 H 0.06 1.46 7.02 -51.93 -0.36 1.10 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.08 1.67 7.07 -51.93 -0.37 1.30 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -33.86 357.68 -6.32 -40.18 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.70 Total: 0.69 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: -0.94 Total: 22.49 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.74 Total: -62.38 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.31 Total: -22.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.86 -6.32 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972722088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.029 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds