Wall clock time and date at job start Tue Mar 31 2020 21:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35768 * 116.99414 * 2 1 4 4 C 1.38926 * 119.92068 * 0.02562 * 3 2 1 5 5 C 1.37735 * 120.11150 * 179.72102 * 4 3 2 6 6 C 1.39717 * 119.95678 * 0.51468 * 5 4 3 7 7 C 1.47603 * 120.08114 * 179.76794 * 6 5 4 8 8 O 1.21582 * 120.00170 * 41.32466 * 7 6 5 9 9 N 1.34778 * 119.99446 * 221.31929 * 7 6 5 10 10 C 1.46501 * 120.00125 * 355.47223 * 9 7 6 11 11 C 1.46500 * 119.99797 * 175.46648 * 9 7 6 12 12 H 1.09000 * 110.91425 * 3.90311 * 11 9 7 13 13 C 1.54904 * 111.00499 * 127.80686 * 11 9 7 14 14 N 1.47747 * 104.84340 * 155.16741 * 13 11 9 15 15 C 1.36940 * 125.82157 * 155.82624 * 14 13 11 16 16 H 1.08003 * 120.00128 * 359.93862 * 15 14 13 17 17 C 1.38810 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31615 * 119.99862 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46735 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46732 * 120.00058 * 19 17 15 22 22 H 1.48497 * 109.47216 * 240.00571 * 19 17 15 23 23 C 1.47019 * 108.52878 * 335.75615 * 14 13 11 24 24 C 1.54326 * 107.40198 * 1.17344 * 23 14 13 25 25 H 1.08996 * 110.72398 * 263.75562 * 24 23 14 26 26 O 1.42904 * 110.71612 * 140.48252 * 24 23 14 27 27 C 1.39739 * 119.83498 * 359.48555 * 6 5 4 28 28 C 1.37902 * 119.88408 * 0.25817 * 27 6 5 29 29 F 1.35100 * 119.97697 * 179.97438 * 28 27 6 30 30 H 1.08998 * 109.46534 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47136 * 300.00279 * 1 2 3 32 32 H 1.08995 * 109.47012 * 60.00345 * 1 2 3 33 33 H 1.07997 * 119.94094 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.01978 * 180.25884 * 5 4 3 35 35 H 1.09001 * 109.46963 * 275.16678 * 10 9 7 36 36 H 1.08994 * 109.47254 * 35.17793 * 10 9 7 37 37 H 1.09004 * 109.46521 * 155.17701 * 10 9 7 38 38 H 1.09002 * 110.36682 * 273.92269 * 13 11 9 39 39 H 1.09005 * 110.36701 * 36.13806 * 13 11 9 40 40 H 0.97007 * 120.00133 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.87677 * 241.68519 * 23 14 13 42 42 H 1.08997 * 109.88584 * 120.67770 * 23 14 13 43 43 H 0.96701 * 113.99892 * 61.45501 * 26 24 23 44 44 H 1.08000 * 120.05658 * 180.27751 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 1.2870 2.3738 0.0005 5 6 1.9080 3.6031 0.0063 6 6 3.3031 3.6800 0.0008 7 6 3.9715 4.9961 0.0018 8 8 3.5447 5.8942 0.7015 9 7 5.0551 5.2020 -0.7727 10 6 5.6289 4.0933 -1.5394 11 6 5.6590 6.5346 -0.8481 12 1 5.1593 7.2271 -0.1707 13 6 7.1791 6.4726 -0.5569 14 7 7.7430 7.6581 -1.2348 15 6 8.9126 8.2894 -0.9048 16 1 9.5096 7.9246 -0.0820 17 6 9.3304 9.3985 -1.6273 18 7 8.6022 9.8438 -2.6291 19 14 10.9262 10.2593 -1.1776 20 1 11.5532 9.5675 -0.0227 21 1 11.8521 10.2231 -2.3380 22 1 10.6420 11.6709 -0.8148 23 6 6.8380 8.0467 -2.3263 24 6 5.6423 7.0713 -2.3038 25 1 5.7931 6.2598 -3.0157 26 8 4.4210 7.7623 -2.5740 27 6 4.0640 2.5080 0.0003 28 6 3.4352 1.2806 -0.0001 29 9 4.1690 0.1463 -0.0012 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2086 2.3145 0.0014 34 1 1.3170 4.5071 0.0110 35 1 6.3147 3.5304 -0.9063 36 1 4.8294 3.4369 -1.8828 37 1 6.1696 4.4881 -2.3996 38 1 7.3624 6.5280 0.5162 39 1 7.6070 5.5580 -0.9674 40 1 8.8943 10.6187 -3.1343 41 1 7.3573 7.9745 -3.2819 42 1 6.4871 9.0670 -2.1714 43 1 4.3914 8.1831 -3.4441 44 1 5.1426 2.5632 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047414766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:32 Heat of formation + Delta-G solvation = -113.223119 kcal Electronic energy + Delta-G solvation = -29607.853469 eV Core-core repulsion = 25247.999567 eV Total energy + Delta-G solvation = -4359.853903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89001 -41.76654 -40.79276 -39.54798 -38.11242 -36.74022 -36.41693 -33.91170 -32.06668 -31.65891 -30.19325 -28.98435 -28.50555 -27.86221 -26.40043 -24.51466 -23.81847 -22.34154 -22.04130 -20.61895 -19.35897 -19.02730 -18.98075 -18.21779 -17.96190 -17.54345 -17.21367 -17.04762 -16.55574 -16.28867 -16.07431 -15.95065 -15.80666 -15.50464 -15.31731 -14.78689 -14.52116 -14.36202 -14.13332 -13.93199 -13.68590 -13.59474 -13.47753 -13.19266 -13.15921 -12.96971 -12.79367 -12.74373 -12.63953 -12.19942 -12.12200 -12.02338 -11.88755 -11.61446 -11.13529 -10.90745 -10.78503 -10.09610 -9.78227 -9.35409 -8.97071 -7.88724 -5.26279 -0.28204 -0.00972 1.46387 1.47810 1.52075 1.57850 1.77059 2.08353 2.43400 2.48319 3.02883 3.12835 3.32228 3.36336 3.56960 3.60398 3.80426 3.86033 3.96981 4.04470 4.05614 4.23452 4.32025 4.36598 4.41202 4.41534 4.46050 4.58247 4.61625 4.75700 4.79015 4.83483 4.86103 4.96523 5.02992 5.13252 5.35741 5.38442 5.42808 5.46423 5.65398 6.11959 6.16087 6.27295 6.83093 6.99242 7.03737 7.68105 8.31127 9.21279 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.002473 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.853074 B =11319.277792 C =11832.019677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.119 3.881 4 C -0.176 4.176 5 C -0.034 4.034 6 C -0.148 4.148 7 C 0.562 3.438 8 O -0.576 6.576 9 N -0.591 5.591 10 C 0.060 3.940 11 C 0.145 3.855 12 H 0.080 0.920 13 C 0.133 3.867 14 N -0.621 5.621 15 C -0.242 4.242 16 H 0.086 0.914 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.295 1.295 23 C 0.163 3.837 24 C 0.084 3.916 25 H 0.087 0.913 26 O -0.571 6.571 27 C -0.079 4.079 28 C 0.047 3.953 29 F -0.137 7.137 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.178 0.822 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.248 0.752 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.392 0.608 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 -21.564 0.911 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.072 3.928 4 C -0.194 4.194 5 C -0.053 4.053 6 C -0.151 4.151 7 C 0.352 3.648 8 O -0.457 6.457 9 N -0.321 5.321 10 C -0.081 4.081 11 C 0.040 3.960 12 H 0.099 0.901 13 C 0.007 3.993 14 N -0.349 5.349 15 C -0.371 4.371 16 H 0.104 0.896 17 C -0.257 4.257 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.189 1.189 21 H -0.216 1.216 22 H -0.222 1.222 23 C 0.037 3.963 24 C 0.023 3.977 25 H 0.104 0.896 26 O -0.378 6.378 27 C -0.099 4.099 28 C 0.027 3.973 29 F -0.115 7.115 30 H 0.140 0.860 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.195 0.805 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.242 0.758 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.013 -21.411 1.799 27.406 hybrid contribution 1.111 1.222 -0.487 1.722 sum -15.902 -20.189 1.312 25.733 Atomic orbital electron populations 1.23549 0.75173 1.06304 1.03185 1.86110 1.24552 1.25430 1.87635 1.19380 0.90694 0.86486 0.96250 1.21321 1.02064 0.89465 1.06544 1.21180 0.92249 0.98910 0.92931 1.19389 0.94753 0.91211 1.09765 1.18581 0.79594 0.87806 0.78831 1.90782 1.65796 1.46280 1.42810 1.47636 1.28787 1.10092 1.45617 1.22416 1.00115 0.88702 0.96841 1.21945 0.93889 0.83921 0.96234 0.90132 1.21951 0.89810 0.90850 0.96683 1.44578 1.23212 1.31759 1.35363 1.19493 0.96793 1.08104 1.12699 0.89574 1.25675 1.02434 0.99310 0.98320 1.70144 1.39778 1.26787 1.23158 0.84972 0.78777 0.77758 0.77571 1.18927 1.21562 1.22170 1.21602 0.88471 0.95048 0.91154 1.23343 0.84282 0.93999 0.96053 0.89578 1.86456 1.36579 1.73112 1.41671 1.21435 1.02184 0.88772 0.97459 1.16856 0.86533 0.82603 1.11267 1.91503 1.76765 1.48721 1.94550 0.85993 0.90815 0.90619 0.80487 0.83849 0.89893 0.88726 0.89935 0.93773 0.92724 0.94217 0.95672 0.96289 0.75787 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -5.13 10.35 -90.96 -0.94 -6.07 16 3 C 0.12 2.07 6.70 22.66 0.15 2.23 16 4 C -0.18 -2.50 9.01 22.32 0.20 -2.30 16 5 C -0.03 -0.65 9.64 22.51 0.22 -0.44 16 6 C -0.15 -3.46 5.15 -20.09 -0.10 -3.56 16 7 C 0.56 17.78 7.31 86.72 0.63 18.41 16 8 O -0.58 -23.38 16.33 -3.97 -0.06 -23.44 16 9 N -0.59 -17.72 2.91 -818.51 -2.38 -20.10 16 10 C 0.06 1.25 7.50 127.77 0.96 2.21 16 11 C 0.15 5.55 3.17 46.38 0.15 5.70 16 12 H 0.08 3.70 7.02 -2.39 -0.02 3.68 16 13 C 0.13 5.41 6.81 86.79 0.59 6.01 16 14 N -0.62 -31.69 3.41 -691.16 -2.35 -34.05 16 15 C -0.24 -13.46 10.29 84.03 0.86 -12.59 16 16 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 17 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 18 N -0.95 -56.30 10.31 21.65 0.22 -56.08 16 19 Si 0.98 45.46 29.55 68.60 2.03 47.48 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 C 0.16 7.94 5.14 86.73 0.45 8.38 16 24 C 0.08 3.16 3.88 31.78 0.12 3.28 16 25 H 0.09 2.77 6.46 -2.39 -0.02 2.75 16 26 O -0.57 -20.88 13.39 -148.98 -2.00 -22.88 16 27 C -0.08 -1.57 7.59 22.55 0.17 -1.39 16 28 C 0.05 0.94 7.30 22.41 0.16 1.11 16 29 F -0.14 -3.01 17.10 44.97 0.77 -2.25 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.28 7.65 -2.39 -0.02 0.26 16 32 H 0.08 0.26 7.65 -2.39 -0.02 0.24 16 33 H 0.18 1.26 6.27 -2.91 -0.02 1.24 16 34 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.08 1.39 6.85 -2.39 -0.02 1.37 16 36 H 0.09 1.59 6.00 -2.39 -0.01 1.57 16 37 H 0.08 1.71 6.38 -2.39 -0.02 1.70 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.96 6.96 -2.38 -0.02 1.94 16 40 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 41 H 0.03 1.32 7.51 -2.39 -0.02 1.30 16 42 H 0.02 1.07 7.28 -2.39 -0.02 1.05 16 43 H 0.39 11.01 9.11 -74.06 -0.67 10.33 16 44 H 0.17 2.79 5.53 -2.91 -0.02 2.77 16 Total: -1.00 -77.47 360.59 1.82 -75.65 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.39 Total: 16.66 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 6.14 Total: 25.06 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.51 Total: -110.22 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -3.00 Total: -52.39 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.77 Total: -2.25 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.47 1.82 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047414766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.571 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds