Wall clock time and date at job start Tue Mar 31 2020 21:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35699 * 116.99794 * 2 1 4 4 C 1.38695 * 120.12390 * 0.02562 * 3 2 1 5 5 C 1.38050 * 120.11329 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.36629 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87327 * 179.97438 * 6 5 4 8 8 C 1.37982 * 120.24540 * 359.71638 * 6 5 4 9 9 C 1.39723 * 119.88128 * 0.55428 * 8 6 5 10 10 C 1.47535 * 120.17798 * 179.71929 * 9 8 6 11 11 O 1.21588 * 119.99883 * 179.72940 * 10 9 8 12 12 N 1.34775 * 120.00035 * 359.72808 * 10 9 8 13 13 C 1.46508 * 120.00124 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.45584 * 35.02780 * 13 12 10 15 15 C 1.53038 * 109.44654 * 275.06202 * 13 12 10 16 16 C 1.53631 * 109.24213 * 178.49587 * 15 13 12 17 17 N 1.46923 * 108.54036 * 54.85570 * 16 15 13 18 18 C 1.36940 * 120.62812 * 126.37121 * 17 16 15 19 19 H 1.07992 * 119.99796 * 332.04606 * 18 17 16 20 20 C 1.38808 * 119.99786 * 152.04325 * 18 17 16 21 21 N 1.31614 * 120.00335 * 342.64662 * 20 18 17 22 22 Si 1.86804 * 119.99838 * 162.64095 * 20 18 17 23 23 H 1.48506 * 109.47210 * 270.00074 * 22 20 18 24 24 H 1.48502 * 109.46891 * 30.00315 * 22 20 18 25 25 H 1.48502 * 109.47171 * 150.00370 * 22 20 18 26 26 C 1.46928 * 118.74171 * 306.09682 * 17 16 15 27 27 C 1.53041 * 109.46001 * 155.00322 * 13 12 10 28 28 H 1.08999 * 109.49799 * 61.42211 * 27 13 12 29 29 O 1.42895 * 109.49512 * 301.32239 * 27 13 12 30 30 H 1.09006 * 109.47349 * 60.00767 * 1 2 3 31 31 H 1.09001 * 109.46817 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47681 * 299.99670 * 1 2 3 33 33 H 1.08001 * 119.94219 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.81966 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.05544 * 180.27553 * 8 6 5 36 36 H 0.97001 * 120.00553 * 0.02562 * 12 10 9 37 37 H 1.08994 * 109.50474 * 298.57334 * 15 13 12 38 38 H 1.09007 * 109.49914 * 58.63728 * 15 13 12 39 39 H 1.09000 * 109.73449 * 295.11703 * 16 15 13 40 40 H 1.08998 * 109.66186 * 174.55352 * 16 15 13 41 41 H 0.97001 * 120.00091 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.58917 * 173.65023 * 26 17 16 43 43 H 1.09003 * 109.58668 * 293.93191 * 26 17 16 44 44 H 0.96702 * 114.00352 * 180.16637 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2921 2.3739 0.0005 5 6 1.9190 3.6038 0.0011 6 6 3.3040 3.6851 0.0005 7 9 3.9071 4.8940 0.0005 8 6 4.0676 2.5359 0.0054 9 6 3.4439 1.2856 -0.0009 10 6 4.2541 0.0526 -0.0020 11 8 3.7079 -1.0337 -0.0025 12 7 5.5996 0.1304 -0.0026 13 6 6.4041 -1.0940 -0.0031 14 1 5.8999 -1.8595 -0.5930 15 6 6.5781 -1.5900 1.4342 16 6 7.3902 -2.8941 1.4249 17 7 8.6527 -2.6532 0.7131 18 6 9.8530 -2.9518 1.3009 19 1 9.9479 -2.9292 2.3764 20 6 10.9475 -3.2834 0.5142 21 7 10.7719 -3.6446 -0.7391 22 14 12.6698 -3.2168 1.2345 23 1 13.2425 -1.8629 1.0239 24 1 12.6094 -3.5079 2.6895 25 1 13.5267 -4.2266 0.5628 26 6 8.6028 -2.0917 -0.6437 27 6 7.7769 -0.8018 -0.6134 28 1 8.2917 -0.0543 -0.0098 29 8 7.6119 -0.3096 -1.9447 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8899 33 1 0.2135 2.3186 0.0005 34 1 1.3281 4.5078 0.0011 35 1 5.1456 2.6027 0.0094 36 1 6.0354 0.9970 -0.0018 37 1 7.1041 -0.8352 2.0185 38 1 5.5990 -1.7751 1.8762 39 1 6.8264 -3.6752 0.9150 40 1 7.6010 -3.2021 2.4490 41 1 11.5368 -3.8760 -1.2889 42 1 9.6140 -1.8702 -0.9850 43 1 8.1381 -2.8097 -1.3195 44 1 8.4433 -0.1053 -2.3944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090472621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:50 Heat of formation + Delta-G solvation = -111.081850 kcal Electronic energy + Delta-G solvation = -29685.494669 eV Core-core repulsion = 25325.733618 eV Total energy + Delta-G solvation = -4359.761050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.08967 -40.75623 -39.31280 -37.80900 -37.27551 -35.24637 -34.30965 -32.49186 -31.55791 -30.05126 -29.37125 -28.80727 -27.48685 -25.42723 -24.17805 -22.64038 -22.31636 -21.69376 -20.37351 -19.62414 -18.62282 -17.82269 -17.27960 -16.93274 -16.55740 -16.18824 -16.08522 -15.66908 -15.64894 -15.10585 -14.81434 -14.75861 -14.51699 -13.99295 -13.74673 -13.61012 -13.31269 -13.23008 -13.06735 -12.74669 -12.53002 -12.20222 -12.15650 -11.92487 -11.65610 -11.49494 -11.22704 -11.20838 -10.83598 -10.76004 -10.39616 -10.18401 -10.01051 -9.83170 -9.56815 -9.50580 -9.32684 -8.72651 -8.52936 -8.39079 -6.77663 -5.86391 -3.30073 0.44308 0.85173 2.73725 2.95283 3.28746 3.34086 3.41041 3.42336 3.60588 3.92190 4.26049 4.30289 4.41931 4.60676 4.66147 4.81006 4.86962 4.88739 5.14700 5.22866 5.28274 5.31677 5.42854 5.49472 5.56309 5.62744 5.67992 5.76216 5.93831 6.02183 6.11023 6.24079 6.29146 6.47125 6.50242 6.72475 6.86914 6.92892 7.04133 7.13262 7.46925 7.72341 7.76566 8.11450 8.36705 8.46403 9.11940 9.74756 10.31086 11.21851 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002724 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.207000 B =10275.514598 C =11080.026952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.175 3.825 4 C -0.194 4.194 5 C -0.089 4.089 6 C 0.051 3.949 7 F -0.138 7.138 8 C -0.081 4.081 9 C -0.137 4.137 10 C 0.557 3.443 11 O -0.517 6.517 12 N -0.712 5.712 13 C 0.164 3.836 14 H 0.089 0.911 15 C -0.139 4.139 16 C 0.145 3.855 17 N -0.589 5.589 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.291 1.291 26 C 0.148 3.852 27 C 0.072 3.928 28 H 0.052 0.948 29 O -0.573 6.573 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 14.918 0.598 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.184 6.184 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.108 4.108 6 C 0.032 3.968 7 F -0.117 7.117 8 C -0.100 4.100 9 C -0.141 4.141 10 C 0.343 3.657 11 O -0.393 6.393 12 N -0.363 5.363 13 C 0.060 3.940 14 H 0.107 0.893 15 C -0.180 4.180 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.217 1.217 26 C 0.021 3.979 27 C 0.011 3.989 28 H 0.070 0.930 29 O -0.377 6.377 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.229 0.771 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -19.460 13.786 0.630 23.856 hybrid contribution 1.612 1.007 0.128 1.906 sum -17.847 14.794 0.758 23.194 Atomic orbital electron populations 1.23209 0.78622 1.04639 1.01121 1.86445 1.20787 1.24803 1.86395 1.19063 0.90949 0.85171 0.92161 1.21090 1.00694 0.90996 1.08453 1.21067 0.92701 0.98812 0.98258 1.17335 0.90877 0.80474 1.08139 1.91514 1.83671 1.42087 1.94428 1.21188 1.00862 0.89993 0.97967 1.19325 0.91006 0.93791 1.10006 1.17778 0.82270 0.88148 0.77494 1.90831 1.71503 1.28236 1.48747 1.46024 1.05457 1.10229 1.74558 1.21004 0.89826 0.86196 0.96943 0.89270 1.22497 1.00395 1.00189 0.94905 1.21031 0.87472 0.92755 0.96912 1.44033 1.01098 1.71893 1.14306 1.19225 0.86645 1.41002 0.91615 0.91317 1.25080 0.99014 0.98921 0.96628 1.70029 1.29537 1.47453 1.07562 0.86264 0.84389 0.77383 0.78582 1.21419 1.20346 1.21712 1.21416 0.99614 0.89769 0.87093 1.22978 0.95032 0.98517 0.82361 0.93047 1.86420 1.35492 1.87254 1.28550 0.92515 0.87726 0.92525 0.83816 0.84062 0.83605 0.77147 0.92005 0.91747 0.95743 0.92093 0.93487 0.88814 0.95193 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.27 -3.54 8.57 -40.70 -0.35 -3.89 16 3 C 0.18 2.11 6.70 -38.72 -0.26 1.85 16 4 C -0.19 -1.65 9.03 -39.48 -0.36 -2.01 16 5 C -0.09 -0.74 10.01 -39.47 -0.39 -1.13 16 6 C 0.05 0.51 7.28 -39.49 -0.29 0.23 16 7 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 8 C -0.08 -0.88 9.51 -39.12 -0.37 -1.25 16 9 C -0.14 -1.82 5.88 -104.85 -0.62 -2.43 16 10 C 0.56 9.18 7.73 -12.47 -0.10 9.08 16 11 O -0.52 -10.31 14.82 -16.61 -0.25 -10.56 16 12 N -0.71 -11.11 4.87 -54.80 -0.27 -11.38 16 13 C 0.16 3.01 2.12 -67.89 -0.14 2.86 16 14 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 15 C -0.14 -2.55 5.67 -26.38 -0.15 -2.70 16 16 C 0.15 3.07 6.54 -3.48 -0.02 3.05 16 17 N -0.59 -14.42 2.99 -172.05 -0.51 -14.94 16 18 C -0.26 -6.81 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 22 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.15 3.42 4.93 -3.71 -0.02 3.40 16 27 C 0.07 1.35 3.14 -26.61 -0.08 1.26 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -9.82 13.16 -35.23 -0.46 -10.29 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.14 0.80 6.30 -52.49 -0.33 0.47 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.15 1.37 6.40 -52.49 -0.34 1.03 16 36 H 0.39 5.16 6.63 -40.82 -0.27 4.89 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 42 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.38 5.16 9.08 45.56 0.41 5.57 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -33.26 365.00 -7.70 -40.95 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.95 Total: 8.42 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -2.04 Total: 6.37 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.16 Total: -51.17 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.06 Total: -24.73 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.26 -7.70 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090472621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.130 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds