Wall clock time and date at job start Tue Mar 31 2020 21:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35354 * 117.00098 * 2 1 4 4 N 1.30550 * 125.44910 * 180.29356 * 3 2 1 5 5 C 1.36329 * 108.38487 * 180.16420 * 4 3 2 6 6 C 1.47366 * 126.41386 * 179.83171 * 5 4 3 7 7 O 1.21619 * 120.00412 * 179.68953 * 6 5 4 8 8 N 1.34778 * 119.99836 * 359.68513 * 6 5 4 9 9 C 1.46510 * 120.00132 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47281 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.78627 * 75.80592 * 10 9 8 12 12 C 1.53506 * 113.47477 * 206.62088 * 10 9 8 13 13 C 1.53514 * 83.57452 * 140.79176 * 12 10 9 14 14 N 1.47474 * 87.93324 * 333.97253 * 13 12 10 15 15 C 1.46893 * 111.00100 * 138.70221 * 14 13 12 16 16 C 1.50697 * 109.47311 * 74.03236 * 15 14 13 17 17 O 1.21304 * 119.99912 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00517 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00292 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99849 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00270 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99727 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47058 * 90.00384 * 23 21 19 25 25 H 1.48501 * 109.46817 * 209.99870 * 23 21 19 26 26 H 1.48501 * 109.47206 * 330.00071 * 23 21 19 27 27 C 1.35909 * 107.17416 * 359.56669 * 5 4 3 28 28 O 1.34204 * 125.44670 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47006 * 59.99711 * 1 2 3 30 30 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47041 * 300.00294 * 1 2 3 32 32 H 0.96999 * 120.00057 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.46268 * 60.00138 * 9 8 6 34 34 H 1.08997 * 109.46925 * 300.00730 * 9 8 6 35 35 H 1.09001 * 114.16921 * 254.43405 * 12 10 9 36 36 H 1.09003 * 114.17533 * 27.14386 * 12 10 9 37 37 H 1.09008 * 113.47330 * 219.20734 * 13 12 10 38 38 H 1.09002 * 113.53485 * 88.75173 * 13 12 10 39 39 H 1.09003 * 109.47687 * 194.03171 * 15 14 13 40 40 H 1.09004 * 109.47553 * 314.03284 * 15 14 13 41 41 H 0.96995 * 119.99451 * 359.97438 * 18 16 15 42 42 H 0.97002 * 119.99952 * 179.97438 * 22 21 19 43 43 H 1.08000 * 126.45668 * 180.22757 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3978 -0.0054 5 6 3.5701 2.7406 0.0003 6 6 4.8892 3.3976 0.0006 7 8 4.9640 4.6115 0.0004 8 7 6.0128 2.6532 0.0012 9 6 7.3242 3.3064 0.0021 10 6 8.4238 2.2425 0.0020 11 1 8.5563 1.7724 -0.9725 12 6 9.7383 2.7217 0.6337 13 6 9.7770 1.3007 1.2135 14 7 8.3061 1.2758 1.1096 15 6 7.8348 -0.0276 0.6228 16 6 7.9598 -1.0498 1.7229 17 8 8.3988 -0.7247 2.8060 18 7 7.5847 -2.3256 1.5033 19 6 7.6989 -3.2558 2.5040 20 1 8.0898 -2.9662 3.4683 21 6 7.3118 -4.5709 2.2777 22 7 6.8366 -4.9232 1.1043 23 14 7.4667 -5.8380 3.6415 24 1 6.2121 -5.8667 4.4353 25 1 7.7074 -7.1775 3.0475 26 1 8.6038 -5.4769 4.5258 27 6 2.3604 3.3600 -0.0003 28 8 1.4227 2.3958 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.9531 1.6851 0.0011 33 1 7.4197 3.9281 0.8922 34 1 7.4209 3.9285 -0.8877 35 1 10.5291 2.9314 -0.0866 36 1 9.6147 3.5055 1.3810 37 1 10.1405 1.2606 2.2404 38 1 10.2706 0.5786 0.5631 39 1 6.7910 0.0536 0.3192 40 1 8.4384 -0.3367 -0.2307 41 1 7.2340 -2.5857 0.6371 42 1 6.5667 -5.8414 0.9462 43 1 2.1850 4.4257 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699627708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:04 Heat of formation + Delta-G solvation = -30.086292 kcal Electronic energy + Delta-G solvation = -29150.224034 eV Core-core repulsion = 24813.895176 eV Total energy + Delta-G solvation = -4336.328858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.64054 -40.45406 -39.34803 -38.90030 -37.67771 -35.13433 -34.51430 -33.85235 -31.33795 -30.68966 -30.33801 -28.43362 -27.70858 -25.77369 -24.55470 -23.69859 -22.92878 -22.31519 -20.77197 -19.77321 -19.23881 -19.06471 -17.86141 -17.71880 -17.45841 -16.66204 -16.21760 -16.07472 -15.59999 -15.57107 -15.44959 -14.95290 -14.88511 -14.50157 -14.08802 -13.77631 -13.76569 -13.65363 -13.43720 -12.74354 -12.58072 -12.30199 -12.22641 -11.92074 -11.62760 -11.45989 -11.33601 -11.21098 -11.04724 -10.92728 -10.77104 -10.57684 -10.36921 -10.18992 -10.16552 -9.46246 -9.12435 -8.83390 -8.72103 -8.21420 -7.91930 -6.37616 -3.78127 0.91672 1.71568 1.89378 2.52382 3.04835 3.20237 3.22956 3.28450 3.34434 3.92162 4.00607 4.21960 4.33074 4.51396 4.54370 4.67295 4.70211 4.79932 4.91154 5.02616 5.03405 5.10476 5.26657 5.29052 5.40049 5.43299 5.51552 5.56608 5.71111 5.76526 5.85917 5.89763 6.08796 6.24679 6.30884 6.39221 6.42380 6.62272 7.23001 7.25834 7.55798 7.58830 8.09504 8.10316 8.65652 9.21981 9.58435 10.10294 10.80133 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007526 B = 0.003830 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.719044 B = 7308.351987 C =10652.179816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.239 6.239 3 C 0.385 3.615 4 N -0.451 5.451 5 C -0.046 4.046 6 C 0.604 3.396 7 O -0.542 6.542 8 N -0.700 5.700 9 C 0.140 3.860 10 C 0.002 3.998 11 H 0.084 0.916 12 C -0.135 4.135 13 C 0.013 3.987 14 N -0.436 5.436 15 C 0.007 3.993 16 C 0.446 3.554 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.001 4.001 28 O -0.227 6.227 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.412 0.588 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 14.642 -8.338 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.147 6.147 3 C 0.138 3.862 4 N -0.197 5.197 5 C -0.165 4.165 6 C 0.389 3.611 7 O -0.420 6.420 8 N -0.351 5.351 9 C 0.016 3.984 10 C -0.108 4.108 11 H 0.101 0.899 12 C -0.173 4.173 13 C -0.116 4.116 14 N -0.158 5.158 15 C -0.125 4.125 16 C 0.231 3.769 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.073 4.073 28 O -0.118 6.118 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.810 14.873 -7.092 18.685 hybrid contribution -0.720 -1.321 -0.664 1.645 sum -9.530 13.552 -7.756 18.293 Atomic orbital electron populations 1.23315 0.75141 1.05837 1.02806 1.86468 1.23612 1.15546 1.89029 1.23408 0.85594 0.79525 0.97623 1.71172 1.09850 1.15418 1.23253 1.21681 0.95836 0.88543 1.10428 1.16618 0.82021 0.85846 0.76616 1.90813 1.86858 1.12655 1.51700 1.45799 1.05150 1.11406 1.72753 1.21417 0.79953 0.94462 1.02521 1.23818 0.95436 0.95564 0.95985 0.89858 1.23195 0.95598 0.98316 1.00176 1.23585 0.89880 0.95103 1.03022 1.68874 1.13308 1.05576 1.28090 1.22556 1.01541 0.91376 0.97044 1.19579 0.84962 0.83179 0.89187 1.90528 1.50129 1.79666 1.25835 1.41850 1.56298 1.06895 1.14941 1.19685 1.39962 0.88331 0.94752 0.87993 1.25241 0.96997 0.98126 0.97510 1.69618 1.43193 1.19469 1.21947 0.85876 0.78828 0.79292 0.80395 1.20425 1.20966 1.19455 1.24907 0.84949 0.93745 1.03742 1.84388 1.39553 1.15915 1.71936 0.91487 0.86163 0.91406 0.75035 0.90401 0.90913 0.90487 0.88603 0.88892 0.91561 0.89458 0.92537 0.77483 0.91932 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.73 101.05 1.08 1.24 16 2 O -0.24 -2.86 10.55 -40.98 -0.43 -3.29 16 3 C 0.38 5.05 8.98 52.22 0.47 5.52 16 4 N -0.45 -6.90 11.10 -11.72 -0.13 -7.03 16 5 C -0.05 -0.63 6.99 -82.99 -0.58 -1.21 16 6 C 0.60 8.89 7.81 -12.55 -0.10 8.79 16 7 O -0.54 -8.66 16.89 5.26 0.09 -8.57 16 8 N -0.70 -9.92 5.46 -61.40 -0.34 -10.25 16 9 C 0.14 1.74 5.81 -4.04 -0.02 1.71 16 10 C 0.00 0.03 3.25 -71.44 -0.23 -0.21 16 11 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 12 C -0.13 -1.48 8.00 -26.20 -0.21 -1.69 16 13 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16 14 N -0.44 -7.20 5.63 -237.97 -1.34 -8.54 16 15 C 0.01 0.13 5.07 -4.98 -0.03 0.10 16 16 C 0.45 10.76 7.62 -10.99 -0.08 10.68 16 17 O -0.58 -15.95 15.34 5.54 0.08 -15.86 16 18 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.00 -0.01 11.93 29.90 0.36 0.35 16 28 O -0.23 -2.44 10.20 -17.76 -0.18 -2.62 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 6.17 5.95 -40.82 -0.24 5.93 16 33 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.03 7.94 -51.93 -0.41 0.61 16 37 H 0.09 1.57 8.13 -51.92 -0.42 1.15 16 38 H 0.07 0.96 7.70 -51.93 -0.40 0.56 16 39 H 0.09 1.50 6.33 -51.93 -0.33 1.18 16 40 H 0.06 0.91 7.56 -51.93 -0.39 0.51 16 41 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.24 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -35.62 373.85 -5.98 -41.60 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -5.38 Total: 13.97 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 0.37 Total: 17.36 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -1.14 Total: -64.53 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.44 Total: -30.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.62 -5.98 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699627708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.514 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds