Wall clock time and date at job start Tue Mar 31 2020 21:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35354 * 117.00098 * 2 1 4 4 N 1.30550 * 125.44910 * 180.29356 * 3 2 1 5 5 C 1.36329 * 108.38487 * 180.16420 * 4 3 2 6 6 C 1.47366 * 126.41386 * 179.83171 * 5 4 3 7 7 O 1.21619 * 120.00412 * 179.68953 * 6 5 4 8 8 N 1.34778 * 119.99836 * 359.68513 * 6 5 4 9 9 C 1.46510 * 120.00132 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47281 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.78627 * 75.80592 * 10 9 8 12 12 C 1.53506 * 113.47477 * 206.62088 * 10 9 8 13 13 C 1.53514 * 83.57452 * 140.79176 * 12 10 9 14 14 N 1.47474 * 87.93324 * 333.97253 * 13 12 10 15 15 C 1.46893 * 111.00100 * 138.70221 * 14 13 12 16 16 C 1.50697 * 109.47311 * 74.03236 * 15 14 13 17 17 O 1.21304 * 119.99912 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00517 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00292 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99849 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00270 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99727 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47058 * 90.00384 * 23 21 19 25 25 H 1.48501 * 109.46817 * 209.99870 * 23 21 19 26 26 H 1.48501 * 109.47206 * 330.00071 * 23 21 19 27 27 C 1.35909 * 107.17416 * 359.56669 * 5 4 3 28 28 O 1.34204 * 125.44670 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47006 * 59.99711 * 1 2 3 30 30 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47041 * 300.00294 * 1 2 3 32 32 H 0.96999 * 120.00057 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.46268 * 60.00138 * 9 8 6 34 34 H 1.08997 * 109.46925 * 300.00730 * 9 8 6 35 35 H 1.09001 * 114.16921 * 254.43405 * 12 10 9 36 36 H 1.09003 * 114.17533 * 27.14386 * 12 10 9 37 37 H 1.09008 * 113.47330 * 219.20734 * 13 12 10 38 38 H 1.09002 * 113.53485 * 88.75173 * 13 12 10 39 39 H 1.09003 * 109.47687 * 194.03171 * 15 14 13 40 40 H 1.09004 * 109.47553 * 314.03284 * 15 14 13 41 41 H 0.96995 * 119.99451 * 359.97438 * 18 16 15 42 42 H 0.97002 * 119.99952 * 179.97438 * 22 21 19 43 43 H 1.08000 * 126.45668 * 180.22757 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3978 -0.0054 5 6 3.5701 2.7406 0.0003 6 6 4.8892 3.3976 0.0006 7 8 4.9640 4.6115 0.0004 8 7 6.0128 2.6532 0.0012 9 6 7.3242 3.3064 0.0021 10 6 8.4238 2.2425 0.0020 11 1 8.5563 1.7724 -0.9725 12 6 9.7383 2.7217 0.6337 13 6 9.7770 1.3007 1.2135 14 7 8.3061 1.2758 1.1096 15 6 7.8348 -0.0276 0.6228 16 6 7.9598 -1.0498 1.7229 17 8 8.3988 -0.7247 2.8060 18 7 7.5847 -2.3256 1.5033 19 6 7.6989 -3.2558 2.5040 20 1 8.0898 -2.9662 3.4683 21 6 7.3118 -4.5709 2.2777 22 7 6.8366 -4.9232 1.1043 23 14 7.4667 -5.8380 3.6415 24 1 6.2121 -5.8667 4.4353 25 1 7.7074 -7.1775 3.0475 26 1 8.6038 -5.4769 4.5258 27 6 2.3604 3.3600 -0.0003 28 8 1.4227 2.3958 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.9531 1.6851 0.0011 33 1 7.4197 3.9281 0.8922 34 1 7.4209 3.9285 -0.8877 35 1 10.5291 2.9314 -0.0866 36 1 9.6147 3.5055 1.3810 37 1 10.1405 1.2606 2.2404 38 1 10.2706 0.5786 0.5631 39 1 6.7910 0.0536 0.3192 40 1 8.4384 -0.3367 -0.2307 41 1 7.2340 -2.5857 0.6371 42 1 6.5667 -5.8414 0.9462 43 1 2.1850 4.4257 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699627708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:03 Heat of formation + Delta-G solvation = -63.759053 kcal Electronic energy + Delta-G solvation = -29151.684194 eV Core-core repulsion = 24813.895176 eV Total energy + Delta-G solvation = -4337.789018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.55791 -41.64453 -40.45607 -39.78205 -39.50978 -36.11770 -35.97094 -35.53921 -33.33370 -32.09239 -31.29621 -29.47614 -28.32768 -27.54727 -25.56224 -25.36043 -23.92662 -23.25142 -21.79319 -21.09791 -20.79265 -20.03395 -19.91016 -18.60536 -18.45067 -17.81194 -17.48114 -17.24778 -16.92085 -16.57966 -16.48007 -16.29837 -16.13848 -15.91402 -15.57813 -15.44560 -15.01068 -14.77156 -14.48319 -14.20384 -13.85698 -13.53904 -13.13862 -13.11300 -12.97061 -12.90635 -12.74749 -12.44227 -12.36067 -12.13198 -12.10463 -11.94087 -11.88608 -11.73103 -11.50355 -11.27260 -10.34821 -10.18346 -10.01580 -9.77818 -9.73901 -8.46399 -5.95309 0.00809 0.85554 0.88811 1.36992 1.40321 1.53361 1.71563 2.02218 2.06990 2.18126 2.28499 2.82424 3.19362 3.23435 3.38666 3.57810 3.74133 3.79409 4.02044 4.12336 4.18848 4.20362 4.23006 4.26212 4.35698 4.39898 4.43391 4.51093 4.62256 4.63599 4.69905 4.87278 4.89686 5.02455 5.20790 5.30221 5.40169 5.45246 5.58851 5.92138 6.09592 6.25647 6.53394 6.59715 7.01298 7.12400 7.55105 8.11023 8.71106 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007526 B = 0.003830 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3719.719044 B = 7308.351987 C =10652.179816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.262 6.262 3 C 0.381 3.619 4 N -0.491 5.491 5 C -0.083 4.083 6 C 0.603 3.397 7 O -0.560 6.560 8 N -0.704 5.704 9 C 0.140 3.860 10 C 0.012 3.988 11 H 0.105 0.895 12 C -0.109 4.109 13 C 0.002 3.998 14 N -0.467 5.467 15 C 0.023 3.977 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.273 1.273 27 C 0.031 3.969 28 O -0.214 6.214 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.077 0.923 32 H 0.407 0.593 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 15.426 -9.546 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.170 6.170 3 C 0.134 3.866 4 N -0.237 5.237 5 C -0.201 4.201 6 C 0.389 3.611 7 O -0.440 6.440 8 N -0.353 5.353 9 C 0.017 3.983 10 C -0.098 4.098 11 H 0.123 0.877 12 C -0.147 4.147 13 C -0.126 4.126 14 N -0.190 5.190 15 C -0.109 4.109 16 C 0.229 3.771 17 O -0.504 6.504 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.041 4.041 28 O -0.104 6.104 29 H 0.101 0.899 30 H 0.158 0.842 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -9.549 15.660 -8.329 20.145 hybrid contribution -0.564 -1.532 -0.282 1.657 sum -10.113 14.128 -8.612 19.392 Atomic orbital electron populations 1.23701 0.72547 1.07625 1.04075 1.86460 1.26322 1.15259 1.88933 1.23410 0.85483 0.80331 0.97369 1.71049 1.11403 1.16609 1.24680 1.21688 0.96469 0.88504 1.13446 1.16762 0.82508 0.85697 0.76166 1.90787 1.87218 1.13144 1.52895 1.45892 1.05791 1.11145 1.72504 1.21526 0.79257 0.94473 1.03065 1.23889 0.95922 0.94261 0.95696 0.87731 1.23133 0.95701 0.95620 1.00265 1.23633 0.89035 0.98220 1.01751 1.68867 1.14293 1.05152 1.30720 1.22394 1.02734 0.90665 0.95117 1.20647 0.82897 0.83465 0.90101 1.90493 1.51429 1.80377 1.28067 1.41926 1.56937 1.07468 1.14636 1.19641 1.42065 0.89855 0.94788 0.90508 1.26024 0.95944 0.99285 0.99848 1.69679 1.42903 1.20266 1.23134 0.84946 0.78714 0.77162 0.77610 1.19755 1.19291 1.19775 1.25647 0.83792 0.94811 0.99874 1.84426 1.39126 1.15378 1.71489 0.89890 0.84175 0.90450 0.75642 0.91326 0.88817 0.86985 0.88288 0.91914 0.91168 0.88662 0.89994 0.77116 0.91284 0.71114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.73 113.37 1.22 1.38 16 2 O -0.26 -6.17 10.55 -64.23 -0.68 -6.85 16 3 C 0.38 9.85 8.98 130.43 1.17 11.02 16 4 N -0.49 -15.12 11.10 -419.39 -4.65 -19.77 16 5 C -0.08 -2.25 6.99 40.31 0.28 -1.97 16 6 C 0.60 17.42 7.81 86.65 0.68 18.09 16 7 O -0.56 -17.34 16.89 -4.09 -0.07 -17.41 16 8 N -0.70 -19.51 5.46 -466.40 -2.55 -22.06 16 9 C 0.14 3.24 5.81 86.38 0.50 3.74 16 10 C 0.01 0.26 3.25 42.18 0.14 0.40 16 11 H 0.10 1.96 7.77 -2.39 -0.02 1.94 16 12 C -0.11 -2.14 8.00 30.94 0.25 -1.90 16 13 C 0.00 0.07 6.71 83.57 0.56 0.63 16 14 N -0.47 -15.24 5.63 -906.79 -5.10 -20.34 16 15 C 0.02 0.82 5.07 85.56 0.43 1.25 16 16 C 0.44 21.95 7.62 87.66 0.67 22.61 16 17 O -0.62 -35.51 15.34 -3.10 -0.05 -35.56 16 18 N -0.57 -30.52 5.29 -306.97 -1.62 -32.14 16 19 C -0.33 -19.54 9.68 84.04 0.81 -18.72 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 23 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.03 0.60 11.93 67.28 0.80 1.41 16 28 O -0.21 -4.26 10.20 18.85 0.19 -4.06 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.41 12.14 5.95 -92.71 -0.55 11.59 16 33 H 0.07 1.72 7.88 -2.39 -0.02 1.70 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.91 7.94 -2.39 -0.02 1.90 16 37 H 0.06 2.20 8.13 -2.38 -0.02 2.18 16 38 H 0.07 1.98 7.70 -2.39 -0.02 1.97 16 39 H 0.10 3.29 6.33 -2.39 -0.02 3.27 16 40 H 0.08 2.52 7.56 -2.38 -0.02 2.50 16 41 H 0.40 20.13 7.90 -92.71 -0.73 19.40 16 42 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.27 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -80.02 373.85 -4.44 -84.46 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.20 Total: 40.38 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 7.98 Total: 37.82 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -13.64 Total: -144.62 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -0.60 Total: -63.89 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -80.02 -4.44 -84.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699627708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.704 kcal (2) G-P(sol) polarization free energy of solvation -80.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds