Wall clock time and date at job start Tue Mar 31 2020 20:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34953 * 119.70316 * 2 1 4 4 C 1.38327 * 119.01602 * 180.22982 * 3 2 1 5 5 C 1.47305 * 120.73400 * 179.77309 * 4 3 2 6 6 O 1.21620 * 119.99658 * 260.18086 * 5 4 3 7 7 N 1.34779 * 120.00233 * 80.17423 * 5 4 3 8 8 C 1.47153 * 120.98120 * 355.01208 * 7 5 4 9 9 C 1.53290 * 108.41584 * 129.42277 * 8 7 5 10 10 O 1.43046 * 109.17828 * 52.28956 * 9 8 7 11 11 C 1.42961 * 114.18349 * 297.43329 * 10 9 8 12 12 H 1.09000 * 109.55615 * 302.64335 * 11 10 9 13 13 C 1.52998 * 109.51373 * 182.51295 * 11 10 9 14 14 N 1.46496 * 109.47071 * 65.25437 * 13 11 10 15 15 C 1.36938 * 119.99641 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00354 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99789 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46568 * 120.00287 * 19 17 15 22 22 H 1.48497 * 109.47352 * 240.00162 * 19 17 15 23 23 C 1.47144 * 120.98233 * 174.98513 * 7 5 4 24 24 C 1.42088 * 118.52758 * 359.49500 * 4 3 2 25 25 O 1.35011 * 120.33231 * 180.23260 * 24 4 3 26 26 N 1.32217 * 119.33734 * 0.25159 * 24 4 3 27 27 C 1.33333 * 120.92714 * 0.02562 * 26 24 4 28 28 O 1.21904 * 119.19879 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47194 * 180.28812 * 1 2 3 30 30 H 1.09006 * 109.47253 * 300.28479 * 1 2 3 31 31 H 1.08995 * 109.47869 * 60.28279 * 1 2 3 32 32 H 1.07992 * 120.48946 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.67933 * 249.16801 * 8 7 5 34 34 H 1.09000 * 109.68002 * 9.67356 * 8 7 5 35 35 H 1.09000 * 109.51020 * 172.24113 * 9 8 7 36 36 H 1.08994 * 109.51351 * 292.39404 * 9 8 7 37 37 H 1.09000 * 109.47229 * 185.25763 * 13 11 10 38 38 H 1.08999 * 109.46966 * 305.25221 * 13 11 10 39 39 H 0.96993 * 120.00560 * 0.02562 * 14 13 11 40 40 H 0.97004 * 120.00274 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.68486 * 350.28758 * 23 7 5 42 42 H 1.09005 * 109.68047 * 110.79607 * 23 7 5 43 43 H 0.96700 * 114.00010 * 185.01961 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1556 -0.0049 5 6 4.2847 2.4127 -0.0100 6 8 4.7513 2.8359 -1.0504 7 7 4.4702 3.0939 1.1380 8 6 3.8253 2.6614 2.3880 9 6 4.8951 2.5842 3.4833 10 8 5.6083 3.8233 3.5316 11 6 6.3211 4.1359 2.3324 12 1 7.0200 3.3316 2.1032 13 6 7.0916 5.4440 2.5222 14 7 8.1254 5.2580 3.5434 15 6 8.9458 6.2999 3.8847 16 1 8.8305 7.2589 3.4014 17 6 9.9251 6.1240 4.8527 18 7 10.0653 4.9555 5.4421 19 14 11.0447 7.5451 5.3179 20 1 10.6850 8.7417 4.5155 21 1 10.8823 7.8508 6.7621 22 1 12.4563 7.1725 5.0464 23 6 5.3238 4.2917 1.1787 24 6 4.1804 -0.1008 0.0013 25 8 5.5293 -0.1594 0.0016 26 7 3.4638 -1.2119 0.0064 27 6 2.1312 -1.1678 0.0053 28 8 1.5016 -2.2117 0.0106 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8875 31 1 -0.3635 0.5094 -0.8924 32 1 1.5968 2.1093 -0.0004 33 1 3.0585 3.3815 2.6738 34 1 3.3727 1.6799 2.2471 35 1 4.4179 2.4001 4.4458 36 1 5.5883 1.7737 3.2587 37 1 7.5589 5.7304 1.5800 38 1 6.4040 6.2279 2.8397 39 1 8.2288 4.3970 3.9777 40 1 10.7493 4.8326 6.1188 41 1 5.8641 4.3896 0.2371 42 1 4.7079 5.1761 1.3420 43 1 5.8840 -1.0561 -0.0712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724825934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:00 Heat of formation + Delta-G solvation = -71.999184 kcal Electronic energy + Delta-G solvation = -29708.403786 eV Core-core repulsion = 25370.257449 eV Total energy + Delta-G solvation = -4338.146337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.43807 -40.44370 -39.21997 -38.33064 -37.24585 -35.23583 -35.09649 -34.45558 -32.51319 -31.81426 -30.20420 -28.45636 -27.98192 -25.98731 -25.41324 -24.08202 -23.58855 -22.50319 -21.04260 -20.33750 -20.05141 -18.82333 -18.16316 -17.28524 -17.13859 -16.81030 -16.62870 -16.21105 -15.85590 -15.41772 -15.15436 -15.05079 -14.86336 -14.60099 -14.45842 -14.25252 -13.91917 -13.84830 -13.37874 -13.20512 -13.08959 -12.75122 -12.58559 -12.35594 -12.02549 -11.68085 -11.45320 -11.07222 -10.91723 -10.81925 -10.74610 -10.63180 -10.48574 -10.15119 -9.99922 -9.96312 -9.70666 -9.13220 -8.88297 -8.68224 -6.90492 -5.73928 -3.02756 -0.00012 0.88546 1.68204 2.16055 2.60890 2.67065 3.16786 3.45116 3.50436 3.52899 3.54473 3.76333 3.86306 4.00383 4.39946 4.53849 4.55085 4.59439 4.63609 4.69698 4.73880 4.96200 4.99195 5.04150 5.23128 5.28736 5.39134 5.57388 5.59015 5.62897 5.65746 5.80608 5.88845 6.15235 6.24997 6.52962 6.59142 6.66094 7.00948 7.19006 7.39415 7.58248 7.71572 7.77413 8.44051 9.55934 10.12666 10.48170 11.48924 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002365 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.417671 B =11837.586042 C =11957.039478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.519 5.519 3 C 0.239 3.761 4 C -0.288 4.288 5 C 0.589 3.411 6 O -0.518 6.518 7 N -0.602 5.602 8 C 0.073 3.927 9 C 0.046 3.954 10 O -0.356 6.356 11 C 0.073 3.927 12 H 0.066 0.934 13 C 0.164 3.836 14 N -0.727 5.727 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.087 3.913 24 C 0.489 3.511 25 O -0.432 6.432 26 N -0.607 5.607 27 C 0.654 3.346 28 O -0.526 6.526 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.190 0.810 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.024 -8.981 -10.952 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.233 5.233 3 C 0.099 3.901 4 C -0.301 4.301 5 C 0.374 3.626 6 O -0.393 6.393 7 N -0.336 5.336 8 C -0.051 4.051 9 C -0.032 4.032 10 O -0.274 6.274 11 C 0.014 3.986 12 H 0.084 0.916 13 C 0.035 3.965 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.035 4.035 24 C 0.286 3.714 25 O -0.226 6.226 26 N -0.365 5.365 27 C 0.356 3.644 28 O -0.400 6.400 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.207 0.793 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -21.893 -9.457 -11.303 26.391 hybrid contribution 0.496 0.366 0.293 0.682 sum -21.397 -9.092 -11.010 25.724 Atomic orbital electron populations 1.22383 0.75363 1.07255 1.03979 1.46154 1.11031 1.06989 1.59083 1.22549 0.91075 0.91524 0.84924 1.19423 0.92485 0.94044 1.24165 1.17273 0.79856 0.82031 0.83474 1.90843 1.49592 1.67955 1.30921 1.48119 1.48520 1.28604 1.08365 1.22511 0.96835 1.00967 0.84738 1.22903 0.93456 0.88307 0.98538 1.88185 1.65512 1.37573 1.36157 1.22828 0.91931 1.00108 0.83741 0.91618 1.20616 0.90398 0.91731 0.93714 1.42235 1.36740 1.13427 1.44725 1.19263 1.09256 0.91733 1.16741 0.91059 1.24748 0.99822 0.96987 0.99445 1.69681 1.36311 1.22213 1.29804 0.86108 0.80562 0.81512 0.77949 1.20538 1.21891 1.21896 1.22425 0.93370 0.86296 1.01446 1.20121 0.84730 0.88062 0.78446 1.85063 1.14505 1.37990 1.85066 1.69717 1.05620 1.27061 1.34111 1.17411 0.84681 0.83097 0.79239 1.90999 1.65739 1.29962 1.53335 0.87099 0.89377 0.89499 0.79267 0.89918 0.89946 0.87735 0.92647 0.94570 0.95237 0.77907 0.93592 0.87771 0.90010 0.71939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.17 10.57 59.84 0.63 0.80 16 2 N -0.52 -3.54 2.96 -128.87 -0.38 -3.93 16 3 C 0.24 1.33 9.68 -16.15 -0.16 1.17 16 4 C -0.29 -2.60 3.92 -104.70 -0.41 -3.01 16 5 C 0.59 6.79 6.76 -12.57 -0.09 6.71 16 6 O -0.52 -7.88 16.60 5.26 0.09 -7.79 16 7 N -0.60 -6.59 3.02 -173.59 -0.52 -7.12 16 8 C 0.07 0.62 6.49 -3.54 -0.02 0.60 16 9 C 0.05 0.53 6.99 37.31 0.26 0.79 16 10 O -0.36 -5.80 10.34 -35.23 -0.36 -6.16 16 11 C 0.07 1.17 2.81 -26.58 -0.07 1.09 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 13 C 0.16 3.22 5.93 -4.05 -0.02 3.20 16 14 N -0.73 -18.56 5.55 -59.91 -0.33 -18.89 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.09 1.11 5.91 -3.54 -0.02 1.09 16 24 C 0.49 4.94 7.93 -15.91 -0.13 4.81 16 25 O -0.43 -4.03 13.08 -16.74 -0.22 -4.25 16 26 N -0.61 -7.04 10.38 -16.47 -0.17 -7.21 16 27 C 0.65 7.51 8.32 -88.49 -0.74 6.77 16 28 O -0.53 -7.70 16.42 5.01 0.08 -7.61 16 29 H 0.11 0.55 6.82 -51.93 -0.35 0.20 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.19 0.27 8.06 -52.49 -0.42 -0.16 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.55 6.05 -51.93 -0.31 0.24 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.39 10.54 7.67 -40.82 -0.31 10.23 16 40 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 1.41 7.12 -51.93 -0.37 1.04 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.42 2.14 8.98 45.56 0.41 2.55 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -40.01 367.19 -6.31 -46.32 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.72 Total: 4.71 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: -1.01 Total: 16.66 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.68 Total: -64.83 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.41 Total: -25.82 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.01 -6.31 -46.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.677 kcal (2) G-P(sol) polarization free energy of solvation -40.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds