Wall clock time and date at job start Tue Mar 31 2020 20:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34953 * 119.70316 * 2 1 4 4 C 1.38327 * 119.01602 * 180.22982 * 3 2 1 5 5 C 1.47305 * 120.73400 * 179.77309 * 4 3 2 6 6 O 1.21620 * 119.99658 * 260.18086 * 5 4 3 7 7 N 1.34779 * 120.00233 * 80.17423 * 5 4 3 8 8 C 1.47153 * 120.98120 * 355.01208 * 7 5 4 9 9 C 1.53290 * 108.41584 * 129.42277 * 8 7 5 10 10 O 1.43046 * 109.17828 * 52.28956 * 9 8 7 11 11 C 1.42961 * 114.18349 * 297.43329 * 10 9 8 12 12 H 1.09000 * 109.55615 * 302.64335 * 11 10 9 13 13 C 1.52998 * 109.51373 * 182.51295 * 11 10 9 14 14 N 1.46496 * 109.47071 * 65.25437 * 13 11 10 15 15 C 1.36938 * 119.99641 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00354 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99789 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46568 * 120.00287 * 19 17 15 22 22 H 1.48497 * 109.47352 * 240.00162 * 19 17 15 23 23 C 1.47144 * 120.98233 * 174.98513 * 7 5 4 24 24 C 1.42088 * 118.52758 * 359.49500 * 4 3 2 25 25 O 1.35011 * 120.33231 * 180.23260 * 24 4 3 26 26 N 1.32217 * 119.33734 * 0.25159 * 24 4 3 27 27 C 1.33333 * 120.92714 * 0.02562 * 26 24 4 28 28 O 1.21904 * 119.19879 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47194 * 180.28812 * 1 2 3 30 30 H 1.09006 * 109.47253 * 300.28479 * 1 2 3 31 31 H 1.08995 * 109.47869 * 60.28279 * 1 2 3 32 32 H 1.07992 * 120.48946 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.67933 * 249.16801 * 8 7 5 34 34 H 1.09000 * 109.68002 * 9.67356 * 8 7 5 35 35 H 1.09000 * 109.51020 * 172.24113 * 9 8 7 36 36 H 1.08994 * 109.51351 * 292.39404 * 9 8 7 37 37 H 1.09000 * 109.47229 * 185.25763 * 13 11 10 38 38 H 1.08999 * 109.46966 * 305.25221 * 13 11 10 39 39 H 0.96993 * 120.00560 * 0.02562 * 14 13 11 40 40 H 0.97004 * 120.00274 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.68486 * 350.28758 * 23 7 5 42 42 H 1.09005 * 109.68047 * 110.79607 * 23 7 5 43 43 H 0.96700 * 114.00010 * 185.01961 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1556 -0.0049 5 6 4.2847 2.4127 -0.0100 6 8 4.7513 2.8359 -1.0504 7 7 4.4702 3.0939 1.1380 8 6 3.8253 2.6614 2.3880 9 6 4.8951 2.5842 3.4833 10 8 5.6083 3.8233 3.5316 11 6 6.3211 4.1359 2.3324 12 1 7.0200 3.3316 2.1032 13 6 7.0916 5.4440 2.5222 14 7 8.1254 5.2580 3.5434 15 6 8.9458 6.2999 3.8847 16 1 8.8305 7.2589 3.4014 17 6 9.9251 6.1240 4.8527 18 7 10.0653 4.9555 5.4421 19 14 11.0447 7.5451 5.3179 20 1 10.6850 8.7417 4.5155 21 1 10.8823 7.8508 6.7621 22 1 12.4563 7.1725 5.0464 23 6 5.3238 4.2917 1.1787 24 6 4.1804 -0.1008 0.0013 25 8 5.5293 -0.1594 0.0016 26 7 3.4638 -1.2119 0.0064 27 6 2.1312 -1.1678 0.0053 28 8 1.5016 -2.2117 0.0106 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8875 31 1 -0.3635 0.5094 -0.8924 32 1 1.5968 2.1093 -0.0004 33 1 3.0585 3.3815 2.6738 34 1 3.3727 1.6799 2.2471 35 1 4.4179 2.4001 4.4458 36 1 5.5883 1.7737 3.2587 37 1 7.5589 5.7304 1.5800 38 1 6.4040 6.2279 2.8397 39 1 8.2288 4.3970 3.9777 40 1 10.7493 4.8326 6.1188 41 1 5.8641 4.3896 0.2371 42 1 4.7079 5.1761 1.3420 43 1 5.8840 -1.0561 -0.0712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724825934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:59 Heat of formation + Delta-G solvation = -108.896155 kcal Electronic energy + Delta-G solvation = -29710.003758 eV Core-core repulsion = 25370.257449 eV Total energy + Delta-G solvation = -4339.746310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.13254 -41.37798 -40.01426 -39.34980 -38.04918 -36.65132 -35.87582 -35.73453 -33.96205 -32.82883 -31.72163 -29.34346 -28.64762 -27.34775 -26.13489 -25.17459 -24.72269 -23.82939 -22.38244 -21.05582 -20.91487 -19.47955 -19.23695 -18.86769 -18.03844 -17.64652 -17.54844 -17.19950 -16.82131 -16.49603 -16.33358 -15.97638 -15.75290 -15.63847 -15.57359 -15.09878 -15.00874 -14.90698 -14.50099 -14.32058 -14.22023 -13.90765 -13.52305 -13.46466 -13.05884 -12.80347 -12.64285 -12.54092 -12.30679 -12.21813 -12.00717 -11.85947 -11.69804 -11.42805 -11.36956 -11.17988 -10.95379 -10.92723 -9.84119 -9.65605 -8.98690 -7.92542 -5.21710 -0.56115 0.13995 1.06785 1.33901 1.49481 1.50589 1.60763 1.77830 2.04227 2.42033 2.58044 2.75892 2.95218 3.16289 3.41943 3.45610 3.57641 3.87647 3.94216 3.96952 4.04336 4.08273 4.17036 4.19966 4.32981 4.44711 4.45504 4.55609 4.68077 4.75571 4.80577 4.86922 4.87823 4.98544 5.05066 5.13300 5.22061 5.51312 6.00577 6.16594 6.24373 6.29448 6.45871 6.83804 6.90526 7.35244 8.09948 8.33369 9.31506 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002365 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.417671 B =11837.586042 C =11957.039478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.508 5.508 3 C 0.278 3.722 4 C -0.314 4.314 5 C 0.598 3.402 6 O -0.560 6.560 7 N -0.600 5.600 8 C 0.080 3.920 9 C 0.037 3.963 10 O -0.385 6.385 11 C 0.085 3.915 12 H 0.043 0.957 13 C 0.160 3.840 14 N -0.742 5.742 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.976 3.024 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.098 3.902 24 C 0.487 3.513 25 O -0.445 6.445 26 N -0.638 5.638 27 C 0.646 3.354 28 O -0.572 6.572 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.245 0.755 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.714 -7.295 -11.320 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.219 5.219 3 C 0.137 3.863 4 C -0.327 4.327 5 C 0.384 3.616 6 O -0.438 6.438 7 N -0.333 5.333 8 C -0.042 4.042 9 C -0.040 4.040 10 O -0.304 6.304 11 C 0.026 3.974 12 H 0.061 0.939 13 C 0.033 3.967 14 N -0.385 5.385 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.025 4.025 24 C 0.287 3.713 25 O -0.242 6.242 26 N -0.398 5.398 27 C 0.348 3.652 28 O -0.449 6.449 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.261 0.739 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -24.626 -7.746 -11.690 28.339 hybrid contribution 1.247 -0.183 0.394 1.321 sum -23.379 -7.929 -11.296 27.149 Atomic orbital electron populations 1.22759 0.72621 1.06907 1.07249 1.46167 1.12584 1.06145 1.56981 1.23259 0.89885 0.92511 0.80643 1.19249 0.93833 0.92166 1.27422 1.17453 0.79228 0.82125 0.82772 1.90826 1.51369 1.69087 1.32481 1.48149 1.47995 1.27928 1.09200 1.22637 0.95998 1.03209 0.82343 1.23188 0.93824 0.85980 1.01057 1.88122 1.66105 1.39762 1.36394 1.22493 0.92352 0.97346 0.85190 0.93860 1.20787 0.89566 0.94052 0.92307 1.42458 1.37879 1.12325 1.45824 1.19710 1.09109 0.92531 1.16070 0.90186 1.25614 1.01839 0.99562 1.00074 1.69845 1.37247 1.24371 1.30733 0.85035 0.78120 0.78978 0.77394 1.18736 1.22091 1.22170 1.22162 0.93200 0.87942 0.99195 1.20234 0.84700 0.88258 0.78123 1.85047 1.14714 1.39395 1.85017 1.69588 1.06356 1.28191 1.35626 1.17484 0.84678 0.83865 0.79126 1.90966 1.66508 1.31831 1.55616 0.89309 0.85791 0.86494 0.73874 0.86939 0.87520 0.85617 0.94015 0.93729 0.94662 0.79468 0.94091 0.88714 0.88062 0.70427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.11 10.57 127.77 1.35 1.46 16 2 N -0.51 -5.31 2.96 -679.96 -2.01 -7.32 16 3 C 0.28 1.86 9.68 84.23 0.82 2.68 16 4 C -0.31 -4.91 3.92 -19.92 -0.08 -4.99 16 5 C 0.60 12.57 6.76 86.63 0.59 13.16 16 6 O -0.56 -16.45 16.60 -4.09 -0.07 -16.51 16 7 N -0.60 -11.68 3.02 -821.37 -2.48 -14.16 16 8 C 0.08 1.09 6.49 86.35 0.56 1.65 16 9 C 0.04 0.78 6.99 72.08 0.50 1.29 16 10 O -0.38 -12.27 10.34 -148.98 -1.54 -13.81 16 11 C 0.09 2.72 2.81 30.69 0.09 2.81 16 12 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 13 C 0.16 6.26 5.93 86.38 0.51 6.77 16 14 N -0.74 -38.47 5.55 -343.46 -1.91 -40.37 16 15 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 18 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 19 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 23 C 0.10 2.36 5.91 86.36 0.51 2.87 16 24 C 0.49 9.52 7.93 85.59 0.68 10.20 16 25 O -0.45 -8.48 13.08 -82.83 -1.08 -9.56 16 26 N -0.64 -14.71 10.38 -438.20 -4.55 -19.26 16 27 C 0.65 14.27 8.32 179.60 1.49 15.77 16 28 O -0.57 -16.88 16.42 -5.00 -0.08 -16.96 16 29 H 0.09 0.73 6.82 -2.39 -0.02 0.71 16 30 H 0.12 -0.51 8.14 -2.38 -0.02 -0.53 16 31 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.25 -1.05 8.06 -2.91 -0.02 -1.07 16 33 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.11 0.98 6.05 -2.39 -0.01 0.97 16 35 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 40 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.09 2.49 7.12 -2.39 -0.02 2.47 16 42 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.44 4.82 8.98 -74.06 -0.67 4.15 16 Total: -1.00 -91.32 367.19 -3.38 -94.70 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.29 Total: 18.31 kcal Atomic # 6 Polarization: 28.40 SS G_CDS: 8.33 Total: 36.73 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -10.67 Total: -141.31 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.77 Total: -56.84 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -91.32 -3.38 -94.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724825934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -91.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds